mRNA_4856 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|162887 vs. uniprot
Match: A0A835Z0N0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0N0_9STRA) HSP 1 Score: 282 bits (721), Expect = 2.460e-96 Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 1 Query: 1 RTCIEQVRHTMPMEHLLDLSREIGFGEADQVSHNVKLNIPLLPFDEADVALCLVSRAGHEETRRRGTIQPHVKGVVVEDRRTRALQLLSVGNPSLLLTMCADYWDGSTISAIPAALKSAILDMYQQWSLVRDCSFHC 411 RTCIEQVRHTMPMEHLLDLSREIGFGEADQVSHNVKLNIPLLPFDEADVALCLVSRAGHEETRRRGTIQPHVKGVVVEDRRTRALQLLSVGNPSLLLTMCADYWDGSTISAIPAALKSAILDMYQQWSLVRDCSFHC Sbjct: 1 RTCIEQVRHTMPMEHLLDLSREIGFGEADQVSHNVKLNIPLLPFDEADVALCLVSRAGHEETRRRGTIQPHVKGVVVEDRRTRALQLLSVGNPSLLLTMCADYWDGSTISAIPAALKSAILDMYQQWSLVRDCSFHC 137
BLAST of jgi.p|Trimin1|162887 vs. uniprot
Match: D7FY90_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY90_ECTSI) HSP 1 Score: 123 bits (308), Expect = 7.150e-30 Identity = 65/127 (51.18%), Postives = 83/127 (65.35%), Query Frame = 1 Query: 10 IEQVRHTMPMEHLLDLSREIGFGEADQVSHNVKLNIPLL-PFDEADVALCLVSRAGHEETRRRGTIQPHVKGVVVEDRRTRALQLLSVGNPSLLLTMCADYWDGSTISAIPAALKSAILDMYQQWSL 387 ++ VR PMEHL DLS IGF AD+ + I ++ P A A G +E+RRRGTIQPH+ V+ ++RR+ ALQLLS GNPS++L MC DYWDGS IS +PA L+ IL M+QQWSL Sbjct: 734 LDHVRDDQPMEHLADLSEAIGFCAADRGMFRERRRIHVINPKLAASRATEDTHAQGQDESRRRGTIQPHLTSVMAQERRSGALQLLSQGNPSIVLGMCRDYWDGSAISNLPATLRKTILGMHQQWSL 860
BLAST of jgi.p|Trimin1|162887 vs. uniprot
Match: A0A662X4U6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X4U6_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 1.050e-16 Identity = 51/143 (35.66%), Postives = 82/143 (57.34%), Query Frame = 1 Query: 1 RTCIEQVRHTMPM----EHLLDLSREIGFGEADQVS-----HNVKLNIPLLPFDEADVALCLVSRAGHEETRRRGTIQPHVKGVVVEDRRTRALQLLSVGNPSLLLTMCADYWDGSTISAIPAALKSAILDMYQQWSLVR-DC 399 R+C++++ + M ++LL+LSRE+GF AD +S ++ + P L E G E+TR RG ++ H+ VV D+R+ QLLS G+P+++L C++YWDG +I + + + AILDMY QW + DC Sbjct: 583 RSCVQRLSAHIRMLPFPKYLLNLSREMGFSVADDLSVFQRRQSIHIICPRLAHHEHTNDH---HDQGQEDTRYRGNLKSHLYSTVVLDKRSHRHQLLSRGHPTVVLAHCSEYWDGKSICPLTSEKQRAILDMYNQWRVEDLDC 722
BLAST of jgi.p|Trimin1|162887 vs. uniprot
Match: G4YTS5_PHYSP (Uncharacterized protein n=8 Tax=Phytophthora TaxID=4783 RepID=G4YTS5_PHYSP) HSP 1 Score: 84.7 bits (208), Expect = 2.070e-16 Identity = 50/143 (34.97%), Postives = 82/143 (57.34%), Query Frame = 1 Query: 1 RTCIEQVRHTMPM----EHLLDLSREIGFGEADQVS-----HNVKLNIPLLPFDEADVALCLVSRAGHEETRRRGTIQPHVKGVVVEDRRTRALQLLSVGNPSLLLTMCADYWDGSTISAIPAALKSAILDMYQQWSLVR-DC 399 R+C++++ + M +HLL+LSRE+GF AD ++ ++ + P L E G ++TR RG ++ H+ VV D+R+ QLLS G+P+++L C++YWDG +I + + + AILDMY QW + DC Sbjct: 639 RSCMQRLSAHIRMLPFPKHLLNLSREMGFSVADDLTMFQRRQSIHIICPRLAHHEHTNDH---HDQGQDDTRYRGNLKSHLYSTVVLDKRSHRHQLLSRGHPTVVLAHCSEYWDGKSICPLTSEKQRAILDMYNQWRVEDLDC 778
BLAST of jgi.p|Trimin1|162887 vs. uniprot
Match: A0A662XKJ7_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XKJ7_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 2.110e-16 Identity = 51/143 (35.66%), Postives = 82/143 (57.34%), Query Frame = 1 Query: 1 RTCIEQVRHTMPM----EHLLDLSREIGFGEADQVS-----HNVKLNIPLLPFDEADVALCLVSRAGHEETRRRGTIQPHVKGVVVEDRRTRALQLLSVGNPSLLLTMCADYWDGSTISAIPAALKSAILDMYQQWSLVR-DC 399 R+C++++ + M ++LL+LSRE+GF AD +S ++ + P L E G E+TR RG ++ H+ VV D+R+ QLLS G+P+++L C++YWDG +I + + + AILDMY QW + DC Sbjct: 640 RSCMQRLSAHIRMLPFPKYLLNLSREMGFSVADDLSVFQRRQSIHIICPRLAHHEHTNDH---HDQGQEDTRYRGNLKSHLYSTVVLDKRSHRHQLLSRGHPTVVLAHCSEYWDGKSICPLTSEKQRAILDMYNQWRVEDLDC 779
BLAST of jgi.p|Trimin1|162887 vs. uniprot
Match: A0A484E8D3_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E8D3_BRELC) HSP 1 Score: 84.3 bits (207), Expect = 2.830e-16 Identity = 51/141 (36.17%), Postives = 78/141 (55.32%), Query Frame = 1 Query: 1 RTCIEQVRHTMPM----EHLLDLSREIGFGEADQVSH-----NVKLNIPLLPF-----DEADVALCLVSRAGHEETRRRGTIQPHVKGVVVEDRRTRALQLLSVGNPSLLLTMCADYWDGSTISAIPAALKSAILDMYQQW 381 R C++Q+ + M +HLL+LSRE+GF A +S ++ + P L D D G E+TR RG ++ H+ VV D+R+ QLLS G+P+++L C++YWDG +I + + + AILDMY QW Sbjct: 635 RNCMQQLSAHIRMLPFPKHLLNLSREMGFSVAHDLSQFQRRQSIHIICPRLAHYEHTSDHHD--------QGQEDTRYRGILKSHLYSTVVLDKRSHRHQLLSRGHPTVVLAHCSEYWDGKSICPLTSEKQRAILDMYNQW 767
BLAST of jgi.p|Trimin1|162887 vs. uniprot
Match: D0NI74_PHYIT (Uncharacterized protein n=15 Tax=Phytophthora TaxID=4783 RepID=D0NI74_PHYIT) HSP 1 Score: 84.0 bits (206), Expect = 3.850e-16 Identity = 50/143 (34.97%), Postives = 81/143 (56.64%), Query Frame = 1 Query: 1 RTCIEQVRHTMPM----EHLLDLSREIGFGEADQVS-----HNVKLNIPLLPFDEADVALCLVSRAGHEETRRRGTIQPHVKGVVVEDRRTRALQLLSVGNPSLLLTMCADYWDGSTISAIPAALKSAILDMYQQWSLVR-DC 399 R+C++++ + M +HLL+LSRE+GF AD ++ ++ + P L E G E+TR RG ++ H+ VV D+R+ QLLS G+P+++L C++YWDG +I + + + ILDMY QW + DC Sbjct: 610 RSCMQRLSAHIRMLPFPKHLLNLSREMGFSVADDLTAFQRRQSIHIICPRLAHHEHTNDH---HDQGQEDTRYRGNLKSHLYSTVVLDKRSHHHQLLSRGHPTVVLAHCSEYWDGKSICPLTSEKQRTILDMYNQWRVEDLDC 749
BLAST of jgi.p|Trimin1|162887 vs. uniprot
Match: A0A3R7YF64_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3R7YF64_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 5.240e-16 Identity = 48/136 (35.29%), Postives = 78/136 (57.35%), Query Frame = 1 Query: 1 RTCIEQVRHTMPM----EHLLDLSREIGFGEADQVS-----HNVKLNIPLLPFDEADVALCLVSRAGHEETRRRGTIQPHVKGVVVEDRRTRALQLLSVGNPSLLLTMCADYWDGSTISAIPAALKSAILDMYQQW 381 R+C++++ + M +HLL+LSRE+GF AD ++ ++ + P L E + G E+TR RG ++ H+ V+ D+R+ QLLS G+P++ L C++YWDG +I + + AILDMY QW Sbjct: 575 RSCMQRLSAHIRMLPFPKHLLNLSREMGFSVADDLTTFQRRQSIHIICPRLAHHEH---MNDHHDQGQEDTRYRGNLKSHLYSTVILDKRSHRHQLLSRGHPTVALAHCSEYWDGKSICPLTNEKQRAILDMYNQW 707
BLAST of jgi.p|Trimin1|162887 vs. uniprot
Match: M4C0G0_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C0G0_HYAAE) HSP 1 Score: 81.6 bits (200), Expect = 2.460e-15 Identity = 47/126 (37.30%), Postives = 73/126 (57.94%), Query Frame = 1 Query: 40 EHLLDLSREIGFGEADQVS-----HNVKLNIPLLPFDEADVALCLVSRAGHEETRRRGTIQPHVKGVVVEDRRTRALQLLSVGNPSLLLTMCADYWDGSTISAIPAALKSAILDMYQQWSLVR-DC 399 +HLL+LSRE+GF A+ ++ ++ + P L E G E+TR RG ++ H+ V+ DRR++ QLLS G+P+++L C +YWDG +I + + + AILDMY QW + DC Sbjct: 602 KHLLNLSREMGFCVAEDLTMFQRRQSIHIICPRLAHHEHTNDH---HDQGQEDTRYRGNLKSHLYSTVILDRRSQRHQLLSRGHPTVVLAHCNEYWDGKSICPLTSEKQRAILDMYNQWRVEDLDC 724
BLAST of jgi.p|Trimin1|162887 vs. uniprot
Match: A0A0P1AG98_PLAHL (Uncharacterized conserved protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AG98_PLAHL) HSP 1 Score: 80.1 bits (196), Expect = 8.540e-15 Identity = 49/143 (34.27%), Postives = 80/143 (55.94%), Query Frame = 1 Query: 1 RTCIEQVRHTMPM----EHLLDLSREIGFGEADQVS-----HNVKLNIPLLPFDEADVALCLVSRAGHEETRRRGTIQPHVKGVVVEDRRTRALQLLSVGNPSLLLTMCADYWDGSTISAIPAALKSAILDMYQQWSLVR-DC 399 R+C++++ + M +HLL+LSRE+GF A ++ ++ + P L E G E+TR RG ++ H+ VV D+R+ QLLS G+P+++L C++YWDG +I + + AIL+MY QW + DC Sbjct: 630 RSCMQRLSAHIRMLPFPKHLLNLSREMGFSVAHDLTMFQRRQSIHIICPRLAHYEHSSDH---HDQGQEDTRYRGNLKSHLYSTVVLDKRSHRHQLLSRGHPTVVLAHCSEYWDGKSICPLSHDKQRAILEMYNQWRVEDLDC 769 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|162887 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_4856 ID=mRNA_4856|Name=jgi.p|Trimin1|162887|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=414bp|location=Sequence derived from alignment at Contig_23:68570..71032+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CGCACGTGCATCGAACAGGTTCGCCACACCATGCCCATGGAGCATCTGCTback to top protein sequence of jgi.p|Trimin1|162887 >Trimin1|162887|e_gw1.23.63.1 ID=Trimin1|162887|e_gw1.23.63.1|Name=jgi.p|Trimin1|162887|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=138bp RTCIEQVRHTMPMEHLLDLSREIGFGEADQVSHNVKLNIPLLPFDEADVAback to top mRNA from alignment at Contig_23:68570..71032+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_4856 ID=mRNA_4856|Name=jgi.p|Trimin1|162887|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2463bp|location=Sequence derived from alignment at Contig_23:68570..71032+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_23:68570..71032+ >mRNA_4856 ID=mRNA_4856|Name=jgi.p|Trimin1|162887|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=414bp|location=Sequence derived from alignment at Contig_23:68570..71032+ (Tribonema minus UTEX_B_3156 )back to top |