mRNA_4832 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|347413
Unique NamemRNA_4832
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|347413 vs. uniprot
Match: A0A836CNM2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNM2_9STRA)

HSP 1 Score: 303 bits (776), Expect = 8.100e-99
Identity = 285/285 (100.00%), Postives = 285/285 (100.00%), Query Frame = 3 
Query:   78 MAAPSSGALMGTPTGGPLSTPAPPLSVSAPCFDPSPMMAPHPGXXXXXXXXXXXXQQHGLMRQGSWNGGMPLXXXXXXXXXXXXXXXXXXCGDETLMLRGGXXXXXXXXXPPPHPNTAFCRAMSFSHAPPPPYGAPSPLQXXXMYGSPCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDLNXXXXXXXXXXXYYPALSPLPEPHGLSHGAEHCDGGASPLGFAPYSSTPEGEADAAAEXXXXXXXXXXXXXXXXAAAAAAEPLRA 932
            MAAPSSGALMGTPTGGPLSTPAPPLSVSAPCFDPSPMMAPHPGXXXXXXXXXXXXQQHGLMRQGSWNGGMPLXXXXXXXXXXXXXXXXXXCGDETLMLRGGXXXXXXXXXPPPHPNTAFCRAMSFSHAPPPPYGAPSPLQXXXMYGSPCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDLNXXXXXXXXXXXYYPALSPLPEPHGLSHGAEHCDGGASPLGFAPYSSTPEGEADAAAEXXXXXXXXXXXXXXXXAAAAAAEPLRA
Sbjct:    1 MAAPSSGALMGTPTGGPLSTPAPPLSVSAPCFDPSPMMAPHPGXXXXXXXXXXXXQQHGLMRQGSWNGGMPLXXXXXXXXXXXXXXXXXXCGDETLMLRGGXXXXXXXXXPPPHPNTAFCRAMSFSHAPPPPYGAPSPLQXXXMYGSPCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDLNXXXXXXXXXXXYYPALSPLPEPHGLSHGAEHCDGGASPLGFAPYSSTPEGEADAAAEXXXXXXXXXXXXXXXXAAAAAAEPLRA 285
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347413 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CNM2_9STRA8.100e-99100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_11contigContig_11:1334236..1335678 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|347413|estExt_Genemark1.C_Ctg_110149
Hectar predicted targeting categoryother localisation
TranscriptId347735
TrackFilteredModels1
ProteinId347413
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347413gene_4832Tribonema minus UTEX_B_3156 geneContig_11 1334236..1335678 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347413Trimin1|347413|estExt_Genemark1.C_Ctg_110149Tribonema minus UTEX_B_3156 polypeptideContig_11 1334744..1335601 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4832_2exon_4832_2Tribonema minus UTEX_B_3156 exonContig_11 1334236..1334382 -
exon_4832_1exon_4832_1Tribonema minus UTEX_B_3156 exonContig_11 1334736..1335678 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_4832UTR3_4832Tribonema minus UTEX_B_3156 three_prime_UTRContig_11 1334736..1334743 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4832CDS_4832Tribonema minus UTEX_B_3156 CDSContig_11 1334744..1335601 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_4832UTR5_4832Tribonema minus UTEX_B_3156 five_prime_UTRContig_11 1335602..1335678 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4832 ID=mRNA_4832|Name=jgi.p|Trimin1|347413|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1090bp|location=Sequence derived from alignment at Contig_11:1334236..1335678- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCCTGTCGGCCATCTGGAGCACGCCCACCGACTGGGTCTCCACATCCAGC
ACCCCCTGCACCCCCTCCCTGCTGCCGATGGCCGCGCCTTCCTCCGGGGC
CCTCATGGGTACCCCCACCGGCGGCCCCCTCAGCACCCCCGCACCCCCCC
TGTCCGTCTCAGCCCCCTGCTTCGACCCCTCCCCCATGATGGCGCCGCAC
CCGGGCCCGGGTGCGGGCTGGCAGCAGCAGCAGCAGCATCAGCAGCAGCA
CGGGCTCATGCGGCAGGGCTCGTGGAACGGCGGCATGCCGCTGCAGCAGC
AGCAGCAGCAGCGCTTTGCACACCGCACGGAGCGCTCGCGCAGCTGGTGC
GGCGATGAGACGCTGATGCTGCGCGGCGGCGGCGGCGGCGGCGGCTGCGG
CGGGCTGCCGCCGCCGCACCCCAACACGGCGTTCTGCCGCGCTATGTCCT
TCAGCCACGCGCCACCGCCGCCGTACGGCGCGCCGTCGCCACTGCAGCAG
CAGCAAATGTACGGCAGCCCCTGCGGGCCGCCGCGGCAGCAGCAGCAGCA
GCAGCAGGGCTTTGCCTTCGACATGAGCAGCGGCGGCGGTAGCAGCGGCT
TTGAAAGCGGCGACGGCGGCAGCGGCGGCGGCGGCAGTGGGTACTGGGCG
CCGCCGCAGCAGCAGCAGTTTGACCTCAACGGGGGCAGCGGCAGCTGCGG
CGGCGGCGGCGGCTACTATCCCGCTCTGTCGCCGCTGCCGGAGCCGCACG
GCCTCTCGCACGGCGCTGAGCACTGCGATGGCGGAGCGTCACCACTGGGG
TTTGCCCCCTACAGTAGTACCCCTGAGGGCGAAGCTGATGCAGCGGCGGA
GGCGGCGGCGGAGATTGGGAGCGCGGCGGGGGGCGCTGGCGGCGGCGACG
CTGCCGCCGCAGCAGCGGAGCCGCTGCGCGCCTGAGATTGAAGGGGGGAG
TGGAGCGAGCGCAGCCCGAGAAACCGCGCGGCGCGCGAATGTGCGCGGGT
ATTTCAGACGGATGGAGCGCCTTGCCGGATGAGAGATTGTACTTCAAGAG
AGAGTTGAAGTCTCAACACTTTCGCACACCTGGAGAAGTG
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protein sequence of jgi.p|Trimin1|347413

>Trimin1|347413|estExt_Genemark1.C_Ctg_110149 ID=Trimin1|347413|estExt_Genemark1.C_Ctg_110149|Name=jgi.p|Trimin1|347413|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=286bp
MAAPSSGALMGTPTGGPLSTPAPPLSVSAPCFDPSPMMAPHPGPGAGWQQ
QQQHQQQHGLMRQGSWNGGMPLQQQQQQRFAHRTERSRSWCGDETLMLRG
GGGGGGCGGLPPPHPNTAFCRAMSFSHAPPPPYGAPSPLQQQQMYGSPCG
PPRQQQQQQQGFAFDMSSGGGSSGFESGDGGSGGGGSGYWAPPQQQQFDL
NGGSGSCGGGGGYYPALSPLPEPHGLSHGAEHCDGGASPLGFAPYSSTPE
GEADAAAEAAAEIGSAAGGAGGGDAAAAAAEPLRA*
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mRNA from alignment at Contig_11:1334236..1335678-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4832 ID=mRNA_4832|Name=jgi.p|Trimin1|347413|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1443bp|location=Sequence derived from alignment at Contig_11:1334236..1335678- (Tribonema minus UTEX_B_3156 )
GCCTGTCGGCCATCTGGAGCACGCCCACCGACTGGGTCTCCACATCCAGC
ACCCCCTGCACCCCCTCCCTGCTGCCGATGGCCGCGCCTTCCTCCGGGGC
CCTCATGGGTACCCCCACCGGCGGCCCCCTCAGCACCCCCGCACCCCCCC
TGTCCGTCTCAGCCCCCTGCTTCGACCCCTCCCCCATGATGGCGCCGCAC
CCGGGCCCGGGTGCGGGCTGGCAGCAGCAGCAGCAGCATCAGCAGCAGCA
CGGGCTCATGCGGCAGGGCTCGTGGAACGGCGGCATGCCGCTGCAGCAGC
AGCAGCAGCAGCGCTTTGCACACCGCACGGAGCGCTCGCGCAGCTGGTGC
GGCGATGAGACGCTGATGCTGCGCGGCGGCGGCGGCGGCGGCGGCTGCGG
CGGGCTGCCGCCGCCGCACCCCAACACGGCGTTCTGCCGCGCTATGTCCT
TCAGCCACGCGCCACCGCCGCCGTACGGCGCGCCGTCGCCACTGCAGCAG
CAGCAAATGTACGGCAGCCCCTGCGGGCCGCCGCGGCAGCAGCAGCAGCA
GCAGCAGGGCTTTGCCTTCGACATGAGCAGCGGCGGCGGTAGCAGCGGCT
TTGAAAGCGGCGACGGCGGCAGCGGCGGCGGCGGCAGTGGGTACTGGGCG
CCGCCGCAGCAGCAGCAGTTTGACCTCAACGGGGGCAGCGGCAGCTGCGG
CGGCGGCGGCGGCTACTATCCCGCTCTGTCGCCGCTGCCGGAGCCGCACG
GCCTCTCGCACGGCGCTGAGCACTGCGATGGCGGAGCGTCACCACTGGGG
TTTGCCCCCTACAGTAGTACCCCTGAGGGCGAAGCTGATGCAGCGGCGGA
GGCGGCGGCGGAGATTGGGAGCGCGGCGGGGGGCGCTGGCGGCGGCGACG
CTGCCGCCGCAGCAGCGGAGCCGCTGCGCGCCTGAGATTGAAGGTGGGTT
TGCTGATGATGCACGGATGGCAGTGCTGCTGCTGCTGCGGCTTTGCTGAT
ATCTTGAGCGCGTGAACAGCAGCAGGCGGCAGTGTGCGCATGGGCGGCTC
GCGCGGACGGCACGTGCGCAGCGGCGCGCAGCGCGTAAGCAGCGCAGTTC
GGCCGCGCTTCGCTTGCTGCGGCGCACTGCGTTCATCGTCGATTGAAGTA
TCGCTTCTTGAAGAGCCAGGGCTTCGCTCACGGCTTGCAGGGGGCGCGAA
GGGCGCCGCTGCCCCCCCCCTAGCCCTGACCGTAAATGCCGATATCCCAG
TGCTCATATACATGCCCTATGCTTGTCCGCCGCTCTACGTCACCAGGGGG
GAGTGGAGCGAGCGCAGCCCGAGAAACCGCGCGGCGCGCGAATGTGCGCG
GGTATTTCAGACGGATGGAGCGCCTTGCCGGATGAGAGATTGTACTTCAA
GAGAGAGTTGAAGTCTCAACACTTTCGCACACCTGGAGAAGTG
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Coding sequence (CDS) from alignment at Contig_11:1334236..1335678-

>mRNA_4832 ID=mRNA_4832|Name=jgi.p|Trimin1|347413|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=858bp|location=Sequence derived from alignment at Contig_11:1334236..1335678- (Tribonema minus UTEX_B_3156 )
ATGGCCGCGCCTTCCTCCGGGGCCCTCATGGGTACCCCCACCGGCGGCCC
CCTCAGCACCCCCGCACCCCCCCTGTCCGTCTCAGCCCCCTGCTTCGACC
CCTCCCCCATGATGGCGCCGCACCCGGGCCCGGGTGCGGGCTGGCAGCAG
CAGCAGCAGCATCAGCAGCAGCACGGGCTCATGCGGCAGGGCTCGTGGAA
CGGCGGCATGCCGCTGCAGCAGCAGCAGCAGCAGCGCTTTGCACACCGCA
CGGAGCGCTCGCGCAGCTGGTGCGGCGATGAGACGCTGATGCTGCGCGGC
GGCGGCGGCGGCGGCGGCTGCGGCGGGCTGCCGCCGCCGCACCCCAACAC
GGCGTTCTGCCGCGCTATGTCCTTCAGCCACGCGCCACCGCCGCCGTACG
GCGCGCCGTCGCCACTGCAGCAGCAGCAAATGTACGGCAGCCCCTGCGGG
CCGCCGCGGCAGCAGCAGCAGCAGCAGCAGGGCTTTGCCTTCGACATGAG
CAGCGGCGGCGGTAGCAGCGGCTTTGAAAGCGGCGACGGCGGCAGCGGCG
GCGGCGGCAGTGGGTACTGGGCGCCGCCGCAGCAGCAGCAGTTTGACCTC
AACGGGGGCAGCGGCAGCTGCGGCGGCGGCGGCGGCTACTATCCCGCTCT
GTCGCCGCTGCCGGAGCCGCACGGCCTCTCGCACGGCGCTGAGCACTGCG
ATGGCGGAGCGTCACCACTGGGGTTTGCCCCCTACAGTAGTACCCCTGAG
GGCGAAGCTGATGCAGCGGCGGAGGCGGCGGCGGAGATTGGGAGCGCGGC
GGGGGGCGCTGGCGGCGGCGACGCTGCCGCCGCAGCAGCGGAGCCGCTGC
GCGCCTGA
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