mRNA_4827 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|347409
Unique Name	mRNA_4827
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|347409 vs. uniprot
Match: A0A835ZJI9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJI9_9STRA)

HSP 1 Score: 395 bits (1014), Expect = 8.300e-137
Identity = 265/265 (100.00%), Postives = 265/265 (100.00%), Query Frame = 1

Query:    1 MGDDIKEPPPALGDAEAGAQRHRSVEARRLSQEAEKYMLQAEKLREKIDRKMTMLAEHDALIRLEXXXXXXXXXXXXXXXXXLWRAALEEGGPEGLAAAVHARLSRVDATVFMRMTDLAENSSDATEREALVALSQGIMRVVETKALWDAAVTXXXXXXXXXXXXXXXARGVLXXXXXXXXXXXXXXAACNKGMAAKLNADIRDSMQRAADAGGLLGSRQPRSVTPQITRRLDVAPMRRSLLAAAVTCRRPDDAQPPLTEEFTPS 795
            MGDDIKEPPPALGDAEAGAQRHRSVEARRLSQEAEKYMLQAEKLREKIDRKMTMLAEHDALIRLEXXXXXXXXXXXXXXXXXLWRAALEEGGPEGLAAAVHARLSRVDATVFMRMTDLAENSSDATEREALVALSQGIMRVVETKALWDAAVTXXXXXXXXXXXXXXXARGVLXXXXXXXXXXXXXXAACNKGMAAKLNADIRDSMQRAADAGGLLGSRQPRSVTPQITRRLDVAPMRRSLLAAAVTCRRPDDAQPPLTEEFTPS
Sbjct:    1 MGDDIKEPPPALGDAEAGAQRHRSVEARRLSQEAEKYMLQAEKLREKIDRKMTMLAEHDALIRLEXXXXXXXXXXXXXXXXXLWRAALEEGGPEGLAAAVHARLSRVDATVFMRMTDLAENSSDATEREALVALSQGIMRVVETKALWDAAVTXXXXXXXXXXXXXXXARGVLXXXXXXXXXXXXXXAACNKGMAAKLNADIRDSMQRAADAGGLLGSRQPRSVTPQITRRLDVAPMRRSLLAAAVTCRRPDDAQPPLTEEFTPS 265

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|347409 vs. uniprot

BLAST of jgi.p|Trimin1|347409 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835ZJI9_9STRA	8.300e-137	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_11	contig	Contig_11:1282375..1285246 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|347409\|estExt_Genemark1.C_Ctg_110143
Hectar predicted targeting category	other localisation
TranscriptId	347731
Track	FilteredModels1
ProteinId	347409

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|347409	gene_4827	Tribonema minus UTEX_B_3156	gene	Contig_11 1282375..1285246 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|347409	Trimin1\|347409\|estExt_Genemark1.C_Ctg_110143	Tribonema minus UTEX_B_3156	polypeptide	Contig_11 1282375..1285246 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_4827_1	exon_4827_1	Tribonema minus UTEX_B_3156	exon	Contig_11 1282375..1282508 +
exon_4827_2	exon_4827_2	Tribonema minus UTEX_B_3156	exon	Contig_11 1283759..1283815 +
exon_4827_3	exon_4827_3	Tribonema minus UTEX_B_3156	exon	Contig_11 1283972..1284216 +
exon_4827_4	exon_4827_4	Tribonema minus UTEX_B_3156	exon	Contig_11 1284285..1284353 +
exon_4827_5	exon_4827_5	Tribonema minus UTEX_B_3156	exon	Contig_11 1284419..1284484 +
exon_4827_6	exon_4827_6	Tribonema minus UTEX_B_3156	exon	Contig_11 1284861..1284970 +
exon_4827_7	exon_4827_7	Tribonema minus UTEX_B_3156	exon	Contig_11 1285130..1285246 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_4827	CDS_4827	Tribonema minus UTEX_B_3156	CDS	Contig_11 1282375..1282508 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_11:1282375..1285246+
coding sequence from alignment at Contig_11:1282375..1285246+

spliced messenger RNA

>mRNA_4827 ID=mRNA_4827|Name=jgi.p|Trimin1|347409|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=798bp|location=Sequence derived from alignment at Contig_11:1282375..1285246+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGATGATATCAAGGAGCCTCCGCCAGCTCTGGGAGACGCGGAGGC
TGGCGCGCAGCGGCATCGCAGCGTGGAGGCCAGGCGCCTGTCGCAGGAGG
CAGAGAAGTACATGCTGCAGGCCGAGAAGCTGCGGGAGAAGATAGACCGC
AAGATGACCATGCTCGCGGAGCACGACGCGCTGATACGGCTGGAGAAGAT
AGACCGCAAAATGACCATGCTCGCGGAGCACGACGCGCTGATACGGCTGT
GGCGCGCGGCGCTGGAGGAGGGGGGGCCGGAGGGGCTCGCGGCGGCGGTG
CACGCGCGGCTGAGCCGTGTGGACGCGACGGTGTTCATGCGCATGACGGA
CCTCGCGGAAAATTCCAGTGATGCCACGGAGCGCGAGGCGCTGGTGGCGC
TCAGCCAGGGCATCATGCGCGTCGTAGAAACGAAGGCTCTCTGGGACGCC
GCGGTGACGCTGGTGGCACTGAGCCAGGGCATCATGCGCGTCGTAGAGAC
GAAGGCGCGAGGGGTGCTCGTGGCGCTCAGCCAGGGCATCATGCGCGTCA
TAGAGACGAAGGCCGCGTGCAATAAGGGCATGGCCGCCAAGCTCAATGCT
GACATCCGAGACAGCATGCAGCGCGCGGCAGACGCGGGGGGGTTGCTGGG
GTCGCGGCAGCCGCGGTCCGTTACACCGCAGATCACGCGGCGACTGGATG
TTGCACCAATGCGACGGTCCCTGTTGGCGGCGGCGGTGACGTGCCGCAGG
CCTGACGACGCGCAGCCGCCGCTGACCGAGGAATTCACCCCCTCGTGA

protein sequence of jgi.p|Trimin1|347409

>Trimin1|347409|estExt_Genemark1.C_Ctg_110143 ID=Trimin1|347409|estExt_Genemark1.C_Ctg_110143|Name=jgi.p|Trimin1|347409|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=266bp
MGDDIKEPPPALGDAEAGAQRHRSVEARRLSQEAEKYMLQAEKLREKIDR
KMTMLAEHDALIRLEKIDRKMTMLAEHDALIRLWRAALEEGGPEGLAAAV
HARLSRVDATVFMRMTDLAENSSDATEREALVALSQGIMRVVETKALWDA
AVTLVALSQGIMRVVETKARGVLVALSQGIMRVIETKAACNKGMAAKLNA
DIRDSMQRAADAGGLLGSRQPRSVTPQITRRLDVAPMRRSLLAAAVTCRR
PDDAQPPLTEEFTPS*

mRNA from alignment at Contig_11:1282375..1285246+

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4827 ID=mRNA_4827|Name=jgi.p|Trimin1|347409|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2872bp|location=Sequence derived from alignment at Contig_11:1282375..1285246+ (Tribonema minus UTEX_B_3156 )
ATGGGAGATGATATCAAGGAGCCTCCGCCAGCTCTGGGAGACGCGGAGGC
TGGCGCGCAGCGGCATCGCAGCGTGGAGGCCAGGCGCCTGTCGCAGGAGG
CAGAGAAGTACATGCTGCAGGCCGAGAAGCTGCGGTTAGAGGCAGAGAGG
GAGAGGCTGCTGATGGAACGGTGAGGCTTCTGCCAGGTTAATGACACCAC
GCTCTTATGATGCTGCAGTGCTGGTACCCCATAATAGGCTGGCAGCGCAA
TGTGTGCTCAGATCCAGCAGCATCGCCGTCAAACAGGATAATATTCATAG
CAGAAGCTGCATGTGTGCGCAGTCACTCAGCGCTGCATGGTGTCATTGTG
ATGCGCGCACTCGGCAACTTGGTTTCAAGCTTGCACCAGTTAAGCCTCAT
GTTCTTGGTCCACCATGCTGGCCGGCACCTCATTCAGAAAGGGATGGATG
ATGACAGATTTGCAGCCTTCGTTCAGTACCTGTTAGCAAAACACGTTTTG
GCTCAACGTAGTACCACTTTGTGCGCCATCCCTTCTACATCTTGCGTGCG
TTGACGGACACAGCGCCTGCACAGATATTTTGACAACTCCGCAAGCATGT
GTGTTTCGAGCGGCTCCTTTTCGCAAATGGTTGCGCATTGTCCATCCCCG
CCAGTTTGCTTTCTTGAGCTTAGATCTGGCGCACTGATCCGCCACAGCAA
AGACAGAGAAGGCGTCGACTGGACAGCTCATAATGACCCCGTTAGCATAT
CAGCACAATGGCAGCGCTCAGCTGCTGTGACCCACATCCATCCGTCGCTT
GTCACACTGGTAATGCGCCGTGCTCGACGGACACCATGAGGGCACGGCAG
CCACCGCGCATGTTCTCCGCACAACACGTCAAGCGCGTGCTCCTGACGCT
GCGTCATTGACCTGCGATGCGCGTCGCTGAGCGCTACTGACGGGCCCTGC
GTCCCGTACTCATACACCAACAACAAAATCATGGCTAACACGCAGACGTC
ATTACCGAGGTCGCCCTGTCATTGCATGCGCTTTGGCGCCGCGCTCTGAC
GCCGCCTGCGCTCGCTGAATGTCCTGACATGACATCTGATTGCGCCCGCG
GAGAGCGGCACGCAGCGCGCTCGCCGCCGCTTCGCCTCATCGTCTGTGAG
CTGTCGCACAAGACTTCGGGGAACAAGCATGTAATATGGGCGCCAGTCTG
CTGTCCCCCCGGCAAATCCGATGCAACCATCCTCGCGCGTGGTCCGCTGG
CAAAGGCTCCAGTAAAAACGCATCCCCGACACTCCATCACGGCCCCCCCC
CCGCGCCCGCCCGCGCGCCGGGAGAAGATATGTCGCAAAATGACTATCCC
CGACCCCCCCCACCCCGCGTTCGCCCGCGTGCAGGGAGAAGATAGACCGC
AAGATGACCATGCTCGCGGAGCACGACGCGCTGATACGGCTGTGGCGGCC
TAGTCACTGCTTCCACTGTACAGAGAAACCGCATCCTCGACACTCCCTCA
CGGTAGCCCCCCCCCCACCCCCATCGCCCCCCCGCGCTCAGGGAGACGAT
AGATCGCAAAATGACCATTCCCCCTCCCCCCCCCCCGGCGCGTGCAGGGA
GAAGATAGACCGCAAAATGACCATGCTCGCGGAGCACGACGCGCTGATAC
GGCTGTGGCGCGCGGCGCTGGAGGAGGGGGGGCCGGAGGGGCTCGCGGCG
GCGGTGCACGCGCGGCTGAGCCGTGTGGACGCGACGGTGTTCATGCGCAT
GACGGACCTCGCGGAAAATTCCAGTGATGCCACGGAGCGCGAGGCGCTGG
TGGCGCTCAGCCAGGGCATCATGCGCGTCGTAGAAACGAAGGGTGAGTCA
GTTTTTTTGGGTCACGTGTGCACTGTATGTGGACGCGCTGTTCGTGTCAT
ACTTCTGTAGCTCTCTGGGACGCCGCGGTGACGCTGGTGGCACTGAGCCA
GGGCATCATGCGCGTCGTAGAGACGAAGGGTGAGTCGGGGTTTCACTGCT
GGCGCGGGTACGTAGGCATGGGTTTTCGCGTTGATAACGCGCAGCGCGAG
GGGTGCTCGTGGCGCTCAGCCAGGGCATCATGCGCGTCATAGAGACGAAG
GCCGCGTGCAGTGCGCGCGCAAGGCACGTGGATTCGGTGGTCTGACTGTC
CGTTAGCAGGCCATCATGTGCATCGCCGAGACGGCGGGCGCGTGCAACAG
GCGGGAATGCTGCAGCGGCGCATACGCTCTCCGGCCTGCTTGATGTCTTC
GCAACGGGATCGTGAAAGTTGAAGTAAATGCGATCACCCACCATGGCTCG
TTGTCGATTGGCTTGAGCATGGCGCGCCTTTAGGTTGGCCTGCTGTGCGC
CACACTCACACTTGAAGTTTGGCTCGCTCAACAGCAGACGGCGCCTGAAG
TTGCATTTGCGTGCGCTTATCATCACCGCACTTCTGCACGCCTCACACTT
GCAGTTCGCATGCGCCTCACGTTCAACACTCTGCAGATAAGGGCATGGCC
GCCAAGCTCAATGCTGACATCCGAGACAGCATGCAGCGCGCGGCAGACGC
GGGGGGGTTGCTGGGGTCGCGGCAGCCGCGGTCCGTTACACCGCAGGTAT
GTACGTTTACAACTTCAACTATCTACTTCAACATTGCATGGAGACAGTGC
TCGCTCAGCGCGGGCACAGAAACTGTGTCCCTACAGCGCCAAGTCGTTGA
CAGACAGCGCAAGCTCAACGAGGGCGCAGAAGCTGTGCGCCTTGCCGCTG
CGCAGATCACGCGGCGACTGGATGTTGCACCAATGCGACGGTCCCTGTTG
GCGGCGGCGGTGACGTGCCGCAGGCCTGACGACGCGCAGCCGCCGCTGAC
CGAGGAATTCACCCCCTCGTGA

Coding sequence (CDS) from alignment at Contig_11:1282375..1285246+

>mRNA_4827 ID=mRNA_4827|Name=jgi.p|Trimin1|347409|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=798bp|location=Sequence derived from alignment at Contig_11:1282375..1285246+ (Tribonema minus UTEX_B_3156 )
ATGGGAGATGATATCAAGGAGCCTCCGCCAGCTCTGGGAGACGCGGAGGC
TGGCGCGCAGCGGCATCGCAGCGTGGAGGCCAGGCGCCTGTCGCAGGAGG
CAGAGAAGTACATGCTGCAGGCCGAGAAGCTGCGGGAGAAGATAGACCGC
AAGATGACCATGCTCGCGGAGCACGACGCGCTGATACGGCTGGAGAAGAT
AGACCGCAAAATGACCATGCTCGCGGAGCACGACGCGCTGATACGGCTGT
GGCGCGCGGCGCTGGAGGAGGGGGGGCCGGAGGGGCTCGCGGCGGCGGTG
CACGCGCGGCTGAGCCGTGTGGACGCGACGGTGTTCATGCGCATGACGGA
CCTCGCGGAAAATTCCAGTGATGCCACGGAGCGCGAGGCGCTGGTGGCGC
TCAGCCAGGGCATCATGCGCGTCGTAGAAACGAAGGCTCTCTGGGACGCC
GCGGTGACGCTGGTGGCACTGAGCCAGGGCATCATGCGCGTCGTAGAGAC
GAAGGCGCGAGGGGTGCTCGTGGCGCTCAGCCAGGGCATCATGCGCGTCA
TAGAGACGAAGGCCGCGTGCAATAAGGGCATGGCCGCCAAGCTCAATGCT
GACATCCGAGACAGCATGCAGCGCGCGGCAGACGCGGGGGGGTTGCTGGG
GTCGCGGCAGCCGCGGTCCGTTACACCGCAGATCACGCGGCGACTGGATG
TTGCACCAATGCGACGGTCCCTGTTGGCGGCGGCGGTGACGTGCCGCAGG
CCTGACGACGCGCAGCCGCCGCTGACCGAGGAATTCACCCCCTCGTGA