mRNA_4763 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|347378
Unique Name	mRNA_4763
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|347378 vs. uniprot
Match: A0A835ZFE9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFE9_9STRA)

HSP 1 Score: 353 bits (907), Expect = 1.150e-119
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 1

Query:    1 MAWLAVGLVLVLATATASGGRSDGSRHWLQEDLLVAVSNGCAEQVIACHDSDECLICIESGHELTLPGDFTCDGVQRALRAAFPQCDLADPIVKVKARLLWVFKALNDCAVTAIGGAAGFNCGSTSRWLAAARTPAETAETAKGKVEAAVGGXXXXXXXXXXXXXXXXXXXKTKGKNKIAKIIKSLKKRVYGLVPVEQEGGK 606
            MAWLAVGLVLVLATATASGGRSDGSRHWLQEDLLVAVSNGCAEQVIACHDSDECLICIESGHELTLPGDFTCDGVQRALRAAFPQCDLADPIVKVKARLLWVFKALNDCAVTAIGGAAGFNCGSTSRWLAAARTPAETAETAKGKVEAAVGGXXXXXXXXXXXXXXXXXXXKTKGKNKIAKIIKSLKKRVYGLVPVEQEGGK
Sbjct:    1 MAWLAVGLVLVLATATASGGRSDGSRHWLQEDLLVAVSNGCAEQVIACHDSDECLICIESGHELTLPGDFTCDGVQRALRAAFPQCDLADPIVKVKARLLWVFKALNDCAVTAIGGAAGFNCGSTSRWLAAARTPAETAETAKGKVEAAVGGXXXXXXXXXXXXXXXXXXXKTKGKNKIAKIIKSLKKRVYGLVPVEQEGGK 202

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|347378 vs. uniprot

BLAST of jgi.p|Trimin1|347378 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835ZFE9_9STRA	1.150e-119	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_11	contig	Contig_11:637107..639692 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|347378\|estExt_Genemark1.C_Ctg_110074
Hectar predicted targeting category	signal peptide
TranscriptId	347700
Track	FilteredModels1
ProteinId	347378

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|347378	gene_4763	Tribonema minus UTEX_B_3156	gene	Contig_11 637107..639692 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_4763_3	exon_4763_3	Tribonema minus UTEX_B_3156	exon	Contig_11 637107..637933 -
exon_4763_2	exon_4763_2	Tribonema minus UTEX_B_3156	exon	Contig_11 638842..638964 -
exon_4763_1	exon_4763_1	Tribonema minus UTEX_B_3156	exon	Contig_11 639504..639692 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_4763	UTR3_4763	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_11 637107..637636 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_4763	CDS_4763	Tribonema minus UTEX_B_3156	CDS	Contig_11 639504..639692 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|347378	Trimin1\|347378\|estExt_Genemark1.C_Ctg_110074	Tribonema minus UTEX_B_3156	polypeptide	Contig_11 637637..639692 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_11:637107..639692-
coding sequence from alignment at Contig_11:637107..639692-

spliced messenger RNA

>mRNA_4763 ID=mRNA_4763|Name=jgi.p|Trimin1|347378|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1139bp|location=Sequence derived from alignment at Contig_11:637107..639692- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTGGCTTGCAGTGGGACTCGTGCTGGTGTTGGCGACGGCGACTGC
ATCTGGCGGACGCAGCGATGGTAGCAGGCATTGGCTGCAGGAGGATCTCC
TCGTGGCAGTCAGCAATGGCTGTGCGGAGCAAGTCATCGCTTGCCATGAC
AGCGACGAGTGCTTGATCTGCATCGAAAGCGGGCACGAGTTGACGCTCCC
AGGCGACTTCACGTGCGACGGCGTACAGCGCGCTCTGCGAGCCGCCTTCC
CGCAGTGCGACCTCGCTGATCCCATTGTTAAGGTGAAGGCACGGCTGCTG
TGGGTATTTAAGGCTCTCAATGACTGCGCAGTGACCGCGATCGGCGGCGC
TGCGGGCTTCAACTGTGGCAGCACCAGCCGCTGGCTGGCGGCAGCGCGCA
CCCCCGCTGAAACCGCCGAAACCGCCAAGGGCAAAGTTGAAGCTGCCGTG
GGGGGCGCAGCTGCAGGTGACAAGCGCGCAGCAGAGGAGGCTAAGAATGC
AGCGGGCGAGGCGAAGACGAAGGGCAAGAACAAAATCGCCAAGATCATCA
AGAGCCTGAAGAAGAGGGTGTATGGGCTGGTGCCGGTGGAGCAGGAAGGG
GGCAAGTGAGCCACTGGGCAAGCAACTGCGGCATATGTACACACACATAC
GCTGACATACGCTGAGGCTTCTGTACAAGGTTGCAGTGTTTGGCGCGTAC
GTAGTGTAGCACAGATGGCATATAGGTTGTGACACCGGGTTTTCATAGGG
CGCCGCAACACAAAGGGCAGCTTCGGCAGCATCACAACGCAATATGGCGC
AGCGGCGAGAGGCCAACAGTAACGGCAGGCGGTCGGCCTTGCACGCATGA
CATTATGGTTGCGGTATCACAGCACTGCACTGGTAGCGAAGGCCGAGAGC
AGGCGATCATGATGCAGTTGCTTGCAGACGAGAAACGTGCACACAGCACA
AGCTGCACCACATTGAAGCTGTCCGAAGCTGGCAGTGATGTACAGTCCAA
CATCCTTGCACCCTCAGCGCACATCCAGGCACAAAAGATACTTCGAAGTA
CCCTTCATCACGACGCACTTTCCATCTAGTAACGTGCAGACCTTGTTCAC
GACTAGCAACTGGTGTGATGTTCAATACATACATTGAAC

protein sequence of jgi.p|Trimin1|347378

>Trimin1|347378|estExt_Genemark1.C_Ctg_110074 ID=Trimin1|347378|estExt_Genemark1.C_Ctg_110074|Name=jgi.p|Trimin1|347378|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=203bp
MAWLAVGLVLVLATATASGGRSDGSRHWLQEDLLVAVSNGCAEQVIACHD
SDECLICIESGHELTLPGDFTCDGVQRALRAAFPQCDLADPIVKVKARLL
WVFKALNDCAVTAIGGAAGFNCGSTSRWLAAARTPAETAETAKGKVEAAV
GGAAAGDKRAAEEAKNAAGEAKTKGKNKIAKIIKSLKKRVYGLVPVEQEG
GK*

mRNA from alignment at Contig_11:637107..639692-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4763 ID=mRNA_4763|Name=jgi.p|Trimin1|347378|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2586bp|location=Sequence derived from alignment at Contig_11:637107..639692- (Tribonema minus UTEX_B_3156 )
ATGGCGTGGCTTGCAGTGGGACTCGTGCTGGTGTTGGCGACGGCGACTGC
ATCTGGCGGACGCAGCGATGGTAGCAGGCATTGGCTGCAGGAGGATCTCC
TCGTGGCAGTCAGCAATGGCTGTGCGGAGCAAGTCATCGCTTGCCATGAC
AGCGACGAGTGCTTGATCTGCATCGAAAGCGGGCACGAGGTACGCAATGA
ACACGGGTATAATAATAATTACACCTGCGCGACGTGCGCTGTGTAAGGAT
AATGTGCATTGGCAGCATGCGCAGCAGACAGAAGAGTGGGTGCAGTCAAA
AGCCGCCCAGGCTTGCAGACCGCCCGTTTTTTGCTGGCATATAGTTTCAT
TCGATTTCTTTTCTAAACTGTATGAGTGCACAGCTGAAGCCCATGCTGCT
TATTGCTTTTGTGCTCGACGGCTCGCATCTAGGTCACAAGTATTTTGTGC
CGTATATGGACAGTGCTTTACTACCATGGCCATGGTATACCGGAGAATCG
CTGCTCTGCTCTCTGGCCAGGCCATCTCACACACACAGACTGCGGCTGTT
GCTGCGCTGCGTTCCTCGCTAGCCTCTATTGGCAAATGCTGCACACACGC
AAGGGCAGGCACGGTGCAGCGACTGCTGTTGCTGATCATGCCGCTCGATG
ATCTCTCTCCGCAGCTGCCTATGGTATTGTGCCCATCCTCATCATCTGAA
TGTGGGATGCTTGTTTCGTCCACTGCAGTTGACGCTCCCAGGCGACTTCA
CGTGCGACGGCGTACAGCGCGCTCTGCGAGCCGCCTTCCCGCAGTGCGAC
CTCGCTGATCCCATTGTTAAGGTGAAGGCACGGCTGCTGTGGGTATTTAA
GGTCAGCGCGATGCGCAGCCATCATCGTGTCTTGCGGTTGCGAGAGCATT
CTCCATGGTGCTATGGAATTACACGTAGTTAGGGACAAATTTTTTAATAA
TCCTTTAAAAAAAAATTATCAATTTTCTCTTTTCCGTTTAAGTGGTTAAA
ACGTCACCTTTTATGGTGGTAGAATGCGTGCGTTGCAGCGGGGTTCGCCT
CACCGAACATACGATCATTCGCACGAACGGCTTTGAGTCGACAGAGTGAG
TCATGCCAGTAAAGCTTAGCAGCGCCCTCAATTCAAGGTGTAGTGCATTA
TAATATTTGTGGTCAAGTCACCTTTGTCACTGCAGCGCGTTTACATGCAT
GTGCTAGTATGGGACGAGAGTTGTGCACCACAGCACACGTCATAACAAAC
AGCCTCTGCACCTGGCCTTGTGGTGGGGCTAGGGGCGGTGTGACACTCTT
CGCTCAACCTCAACTGCAGTGACCAACCAGGTGCCATGTGTTCACACTGT
AGTCACCGATCAGACTACCACGTTTTCACAAGCTTCGTCCGCAGTTACTG
TAAACAGTATGCTGATCTGCGTACGTGATGAGGTGCGCTTGTGATGTATG
GCACTTGATCCATTTCGTTTACATGAAGCTGAATCTGCAAGTCCTGGTGT
GTGCGCATGGACAGCGGCGCTTGTGCCTCTGTCACGAACCGCCTCTGCCG
GTTGGCAGTAGCACGTGGTTGCAATTGTGACTTGAGTTTCAATTTTGTGT
TTGTTGATGTGCGTGGACCGACGTCAGCTTTCAGTACGCGATGCAACCGC
TCAACTGCCCTGGCTTCCATACGCACGACGCAGACTGAGGTATTCTAACC
CTAACCCTAACCCTAACCCTACTTGACGACATGACATCAACACCTTGAAT
CCCCGGCAGGCTCTCAATGACTGCGCAGTGACCGCGATCGGCGGCGCTGC
GGGCTTCAACTGTGGCAGCACCAGCCGCTGGCTGGCGGCAGCGCGCACCC
CCGCTGAAACCGCCGAAACCGCCAAGGGCAAAGTTGAAGCTGCCGTGGGG
GGCGCAGCTGCAGGTGACAAGCGCGCAGCAGAGGAGGCTAAGAATGCAGC
GGGCGAGGCGAAGACGAAGGGCAAGAACAAAATCGCCAAGATCATCAAGA
GCCTGAAGAAGAGGGTGTATGGGCTGGTGCCGGTGGAGCAGGAAGGGGGC
AAGTGAGCCACTGGGCAAGCAACTGCGGCATATGTACACACACATACGCT
GACATACGCTGAGGCTTCTGTACAAGGTTGCAGTGTTTGGCGCGTACGTA
GTGTAGCACAGATGGCATATAGGTTGTGACACCGGGTTTTCATAGGGCGC
CGCAACACAAAGGGCAGCTTCGGCAGCATCACAACGCAATATGGCGCAGC
GGCGAGAGGCCAACAGTAACGGCAGGCGGTCGGCCTTGCACGCATGACAT
TATGGTTGCGGTATCACAGCACTGCACTGGTAGCGAAGGCCGAGAGCAGG
CGATCATGATGCAGTTGCTTGCAGACGAGAAACGTGCACACAGCACAAGC
TGCACCACATTGAAGCTGTCCGAAGCTGGCAGTGATGTACAGTCCAACAT
CCTTGCACCCTCAGCGCACATCCAGGCACAAAAGATACTTCGAAGTACCC
TTCATCACGACGCACTTTCCATCTAGTAACGTGCAGACCTTGTTCACGAC
TAGCAACTGGTGTGATGTTCAATACATACATTGAAC

Coding sequence (CDS) from alignment at Contig_11:637107..639692-

>mRNA_4763 ID=mRNA_4763|Name=jgi.p|Trimin1|347378|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=609bp|location=Sequence derived from alignment at Contig_11:637107..639692- (Tribonema minus UTEX_B_3156 )
ATGGCGTGGCTTGCAGTGGGACTCGTGCTGGTGTTGGCGACGGCGACTGC
ATCTGGCGGACGCAGCGATGGTAGCAGGCATTGGCTGCAGGAGGATCTCC
TCGTGGCAGTCAGCAATGGCTGTGCGGAGCAAGTCATCGCTTGCCATGAC
AGCGACGAGTGCTTGATCTGCATCGAAAGCGGGCACGAGTTGACGCTCCC
AGGCGACTTCACGTGCGACGGCGTACAGCGCGCTCTGCGAGCCGCCTTCC
CGCAGTGCGACCTCGCTGATCCCATTGTTAAGGTGAAGGCACGGCTGCTG
TGGGTATTTAAGGCTCTCAATGACTGCGCAGTGACCGCGATCGGCGGCGC
TGCGGGCTTCAACTGTGGCAGCACCAGCCGCTGGCTGGCGGCAGCGCGCA
CCCCCGCTGAAACCGCCGAAACCGCCAAGGGCAAAGTTGAAGCTGCCGTG
GGGGGCGCAGCTGCAGGTGACAAGCGCGCAGCAGAGGAGGCTAAGAATGC
AGCGGGCGAGGCGAAGACGAAGGGCAAGAACAAAATCGCCAAGATCATCA
AGAGCCTGAAGAAGAGGGTGTATGGGCTGGTGCCGGTGGAGCAGGAAGGG
GGCAAGTGA