mRNA_4753 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|159863
Unique Name	mRNA_4753
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

[Close]

BLAST of jgi.p|Trimin1|159863 vs. uniprot
Match: A0A835ZGT6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGT6_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.560e-10
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 1

Query:    1 QLRWALDAGCPRNGWVCAAVARCGRLRLLQF 93
            QLRWALDAGCPRNGWVCAAVARCGRLRLLQF
Sbjct:    1 QLRWALDAGCPRNGWVCAAVARCGRLRLLQF 31

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|159863 vs. uniprot

BLAST of jgi.p|Trimin1|159863 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835ZGT6_9STRA	1.560e-10	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_11	contig	Contig_11:519699..523294 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|159863\|e_gw1.11.39.1
Hectar predicted targeting category	other localisation
TranscriptId	160185
Track	FilteredModels1
ProteinId	159863

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|159863	gene_4753	Tribonema minus UTEX_B_3156	gene	Contig_11 519699..523294 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|159863	Trimin1\|159863\|e_gw1.11.39.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_11 519699..523294 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_4753_1	exon_4753_1	Tribonema minus UTEX_B_3156	exon	Contig_11 519699..519868 +
exon_4753_2	exon_4753_2	Tribonema minus UTEX_B_3156	exon	Contig_11 521310..521507 +
exon_4753_3	exon_4753_3	Tribonema minus UTEX_B_3156	exon	Contig_11 521757..522039 +
exon_4753_4	exon_4753_4	Tribonema minus UTEX_B_3156	exon	Contig_11 522409..522515 +
exon_4753_5	exon_4753_5	Tribonema minus UTEX_B_3156	exon	Contig_11 522940..523294 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_4753	CDS_4753	Tribonema minus UTEX_B_3156	CDS	Contig_11 519699..519868 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_11:519699..523294+
coding sequence from alignment at Contig_11:519699..523294+

spliced messenger RNA

>mRNA_4753 ID=mRNA_4753|Name=jgi.p|Trimin1|159863|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1113bp|location=Sequence derived from alignment at Contig_11:519699..523294+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGCTGCGGTGGGCTCTCGACGCGGGCTGCCCGCGCAACGGCTGGGTCTG
CGCCGCCGTCGCGCGCTGCGGCCGCCTGCGCCTCCTCCAGTTCGCGCGCG
ACAGCGGCTGCCGCTGGGACGAGAAGACGTGCGCGGCGGCGGCCGCGGGC
GGCCATCTCGCCGTACTCAGGTGGGCGCACGAGCAGGGCTGCCTGTGGAG
CGGGTGGACGTGCGAGGCGGCGGCGGAGGGGGGGCATCTTCAAGTCTTGA
AGTTCGCACGCGAGCGCGGCTGCCTCTGGGACGAGCGCACCTGCATCGGC
GCGGCGCGCGGCGGCCATCTTCCAGTGTTGAAGTTTGCCTTCGAGGCCGG
CTGCCCGATCTCCGACAGGGCGTGCTCTGCGGCAGCCGCCGGCGGGCACC
TCGAGGTGCTGCAGTGGGCGCGCCACCGCGGCTGCCCGTTCTCGCCGCGC
ACCGCCGCCGCCGCCGCCGCCGGCGGCCACCTCGCAATGCTGCGCTGGGC
GTGCGGCGACGGGTGCCCCGTGGACGCGGACGCGTGCGCAAACGCCGCCG
CGCGCGGCCACCTCGCAGTGCTGCGCTGGCTGCGCGAGGAGGCGCGCGCG
CCGTGGGACGCGCGCACGTGCGCCGCCGCCGCGCGCGGGGGGCACCTGCA
CCGCGTGCTGGAGTGGGCGCGCGCCGCGGGTGCGCCGTGGGACGCGGCGA
TGGCGGCGGCGGCGGCGGCGCGCGGGCGGCTGCGCGTGCTGCGCTGGGCG
CACGACAGGGGGTGCCCCATGGACGAGCGCACGTGCGCCAACGCGGCCGG
CGGCGGCCACCTCGAGCTCCTGCGCTGGGCGCGCGAGCACGGCGCCCCCT
GGGACGCGCGCACCTGCAGCGCCGCGGCGGCACGCGGCCACCTGCGCGCG
CTGCAGTGGGCGCGCGCCAGCGGCTGCCCCTGGGACGCGGACTGCTGCAG
CAGGGCGGCGGCGGGGGGGTATCTGGAGTGCCTGCGGTGGGCGCTGGAGG
AGGGGGGGTGCCCCTGGGACGGGGGGGCGTGCCTGCGCCTCGCTGCGGGG
AACTGCCAGTACAAGGTGCTGCGGTACATCAAGGCGCGCATCTGCGAGGA
GCACGGGTGGTAG

protein sequence of jgi.p|Trimin1|159863

>Trimin1|159863|e_gw1.11.39.1 ID=Trimin1|159863|e_gw1.11.39.1|Name=jgi.p|Trimin1|159863|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=371bp
QLRWALDAGCPRNGWVCAAVARCGRLRLLQFARDSGCRWDEKTCAAAAAG
GHLAVLRWAHEQGCLWSGWTCEAAAEGGHLQVLKFARERGCLWDERTCIG
AARGGHLPVLKFAFEAGCPISDRACSAAAAGGHLEVLQWARHRGCPFSPR
TAAAAAAGGHLAMLRWACGDGCPVDADACANAAARGHLAVLRWLREEARA
PWDARTCAAAARGGHLHRVLEWARAAGAPWDAAMAAAAAARGRLRVLRWA
HDRGCPMDERTCANAAGGGHLELLRWAREHGAPWDARTCSAAAARGHLRA
LQWARASGCPWDADCCSRAAAGGYLECLRWALEEGGCPWDGGACLRLAAG
NCQYKVLRYIKARICEEHGW*

mRNA from alignment at Contig_11:519699..523294+

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4753 ID=mRNA_4753|Name=jgi.p|Trimin1|159863|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3596bp|location=Sequence derived from alignment at Contig_11:519699..523294+ (Tribonema minus UTEX_B_3156 )
CAGCTGCGGTGGGCTCTCGACGCGGGCTGCCCGCGCAACGGCTGGGTCTG
CGCCGCCGTCGCGCGCTGCGGCCGCCTGCGCCTCCTCCAGTTCGCGCGCG
ACAGCGGCTGCCGCTGGGACGAGAAGACGTGCGCGGCGGCGGCCGCGGGC
GGCCATCTCGCCGTACTCAGGTGGGGGCGCGCGCTGCAACGAGCTCAGAG
CGGGCAGTACATGTCTTTGCATGCCTCATAAATTTCAAAGCATGCTGATG
ATGGCGTTCGCGGCGTTGAAGGGGGACGCAGCAGCAGCAGCAGCAGCAGC
GGGCGGGCATCTCGCCGTGCTCAGGTGCGGGGCGGGCGCTAAACCGCCAG
AGTGGGCCGTACGTGGGCGCCTCAGGCACTTCGACGCGTGTCCATTGCTG
GCGCCCGCGCGTTGAGCGGTTGCTGAAATGAGCTCACAACGGGCAGTACA
TGTATGCCTCGCGTACTTCAAAGTATGCTGATGTTGGCGTCCGCAGTGTT
GAGGGGGGACGCAGCAGCAGCAGCAGCAGAAAGCGGGCATCTCGCCGTGC
TGAGGCGGGAGCAGGCGCTGGACTTCTGCCGCCATGGGGTCGGCATATTT
GGCATTGCAACTGCTGACGCGAGACGCACTGGTGATGTTGATCTCAGATG
CATTGCTGGTGCGGTGCCTTTACACGGCAGGCGGCCGCTCTGCTGTGCTG
AGGAAGGAACAGGCGCTGAGTTATTCGAGCTCGTGACAGTAGCAGGAGTC
ATTTGCGAGTGTCAAAGTGTGCTCATGCTGGTAACGAAACCACTCAGTCG
AAATCTGTGATCCGATGCGACGGCATGCAGGTGGCGACCTCGCTGCGCTA
AGGTAGGATCAGACTCTGAACTGACTTGGGCTTGTGGCAGGCAGCATTCG
TATGCCATAGAGTATGCATACGCTGGCACTGAAAGTGTGAGCATGATATC
CGTTTCTGCGGCGGGTGGTGCAGTGCTCAGGCTGGGCAGGCGCAGCAGAA
AGTCGTGGTGAGCAGTGATGACAAATGAAACTGTTAGGGATCAATTGCCA
CTAGACTTCCTGAACGCTCAATCTTTCAATTGGCAACTGCTTGTCACAAT
CATGGGCCGGCGAGTCAGTGCAGCGCCATGCAACTCGGTGGAATCCTCCC
TTGGCACTGACGACGCGACCGTCGCAGCACTGTCGGGAGCAAGCGCCGAC
GCCTGACCTCGACCGTAACCTCACAGGCTCGCGAGCGCAGAGACATTTCC
GCTGCGCCTGGTAGGACGCGAGACGGGCAAACGCGCTACGTGCCAAACAC
GGTACTCGCTGTCCACGCACCTAGCAATAATGATAAAACTTCAAGTATAG
TGGAAACGAATCAAAAGATCGTAGAGCTCCAGATGACAAGGGGTGGTGGT
CAGCCGCCAGTGCCTTCCACCAATAACTGCTTAGTAATCCATTGAGAGCT
GATGCTTTGCGTCGTCTCGCGCCGCAGGTGCGCGGGCGAGCAGGACTGCC
CATGGCCGAAACACGATAATCGCTGTGCACGCACCTTGCTGAAACCATAA
TGAAAGTACTTCAATGTGTCATCTATTGACAACCAATGCACTCCGTGGTA
TCGCGCCGCAGGTGGGCGCACGAGCAGGGCTGCCTGTGGAGCGGGTGGAC
GTGCGAGGCGGCGGCGGAGGGGGGGCATCTTCAAGTCTTGAAGTTCGCAC
GCGAGCGCGGCTGCCTCTGGGACGAGCGCACCTGCATCGGCGCGGCGCGC
GGCGGCCATCTTCCAGTGTTGAAGTTTGCCTTCGAGGCCGGCTGCCCGAT
CTCCGACAGGTAGGGTTGCACGAAAAAGATGTTTGGGCCACGCGAATACG
GCGTGTTTGGGGCGTATTTGGCAACCAGGAATACGTCTCAAGCAAACCTC
AACATGACGACATGCCGCGCAAAGGGCGTATCTGTGGGGCATGCGGGGAG
TCTGCGCGGTTCTGAGCATACAGCAGTCCACCACAAAAGCGGCATCATGC
AAACTCAGACATTAACTTCAGTATTCGCTTCCTGTGTGCAACTCTAACCT
TACGACAGGGCGTGCTCTGCGGCAGCCGCCGGCGGGCACCTCGAGGTGCT
GCAGTGGGCGCGCCACCGCGGCTGCCCGTTCTCGCCGCGCACCGCCGCCG
CCGCCGCCGCCGGCGGCCACCTCGCAATGCTGCGCTGGGCGTGCGGCGAC
GGGTGCCCCGTGGACGCGGACGCGTGCGCAAACGCCGCCGCGCGCGGCCA
CCTCGCAGTGCTGCGCTGGCTGCGCGAGGAGGCGCGCGCGCCGTGGGACG
CGCGCACGTGCGCCGCCGCCGCGCGCGGGGGGCACCTGCACGTGCTGCGC
TGGGCGCGGGAGGAGGCCGGCGGCGCTGGCGGCGGCGGCGGCGCTGGCGG
CGGCGGCGGCGCTGGCAACGGCGGCGGAGGCGGCGGTGGCGGTGCTGGCG
GCGGCAATGGCGGCGGCGGCGGTGGCAATGGCGGCGGCAGCGGCGCGTGC
CCGTGGGATGGCACCACGACGGCGGCAGCGGCGCGCGCGGGGCAGCTCGC
GACGCTGCGCTACGCGCTGCGCGGCGGCTGCGACGCGGGCGAGGGTGCGG
TGCTGGCAGCGGCGGCGGGCGGGCACGTCGCGGCGCTGGCGGAGCTGCGC
GCCGCGGGCGCGCCGCTGACGCCGGCGCTGTGCGCGCTGGCGGCGGACGC
GGGGGACGAGCGCGTGCTGGAGTGGGCGCGCGCCGCGGGTGCGCCGTGGG
ACGCGGCGATGGCGGCGGCGGCGGCGGCGCGCGGGCGGCTGCGCGTGCTG
CGCTGGGCGCACGACAGGTGAGGCGGGGGCGCCTTTCTTTGAAGGCTGGG
CTGCGTTGAAAGTTTGCAGAATCGAGACACGCGCACTGCTAGGTGCGACG
CGCTGTCCAATGTGGTGACGGCGGCTACGGTGGCGGAACGGGGGCGATTT
GGTCCTGCGGCGGGTGTATGACAGGTGAGAGGGATGTTGATTGAACCATT
GCTGCGTGGAACGCCACGGGGAGAGGCTGGGGGGAGGGGGGGCGGGGGGC
GCGGTAACATGAGCGCTTGCGTGTGTTTACCGGTCACTATGTCCAAGCAT
GTTCTGCTTTGGAGGATACGCTCGCCAGTGTACAGCTGCTGCCGCGTGGG
AACGCGCATGGGTGTCAGTGGCATCACTGTCACGCATGAAGAATGCGCAC
TGACTGTGAGCGCTACGCACGCGCGCCCTATCATCGCGCAGGGGGTGCCC
CATGGACGAGCGCACGTGCGCCAACGCGGCCGGCGGCGGCCACCTCGAGC
TCCTGCGCTGGGCGCGCGAGCACGGCGCCCCCTGGGACGCGCGCACCTGC
AGCGCCGCGGCGGCACGCGGCCACCTGCGCGCGCTGCAGTGGGCGCGCGC
CAGCGGCTGCCCCTGGGACGCGGACTGCTGCAGCAGGGCGGCGGCGGGGG
GGTATCTGGAGTGCCTGCGGTGGGCGCTGGAGGAGGGGGGGTGCCCCTGG
GACGGGGGGGCGTGCCTGCGCCTCGCTGCGGGGAACTGCCAGTACAAGGT
GCTGCGGTACATCAAGGCGCGCATCTGCGAGGAGCACGGGTGGTAG

Coding sequence (CDS) from alignment at Contig_11:519699..523294+

>mRNA_4753 ID=mRNA_4753|Name=jgi.p|Trimin1|159863|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1113bp|location=Sequence derived from alignment at Contig_11:519699..523294+ (Tribonema minus UTEX_B_3156 )
CAGCTGCGGTGGGCTCTCGACGCGGGCTGCCCGCGCAACGGCTGGGTCTG
CGCCGCCGTCGCGCGCTGCGGCCGCCTGCGCCTCCTCCAGTTCGCGCGCG
ACAGCGGCTGCCGCTGGGACGAGAAGACGTGCGCGGCGGCGGCCGCGGGC
GGCCATCTCGCCGTACTCAGGTGGGCGCACGAGCAGGGCTGCCTGTGGAG
CGGGTGGACGTGCGAGGCGGCGGCGGAGGGGGGGCATCTTCAAGTCTTGA
AGTTCGCACGCGAGCGCGGCTGCCTCTGGGACGAGCGCACCTGCATCGGC
GCGGCGCGCGGCGGCCATCTTCCAGTGTTGAAGTTTGCCTTCGAGGCCGG
CTGCCCGATCTCCGACAGGGCGTGCTCTGCGGCAGCCGCCGGCGGGCACC
TCGAGGTGCTGCAGTGGGCGCGCCACCGCGGCTGCCCGTTCTCGCCGCGC
ACCGCCGCCGCCGCCGCCGCCGGCGGCCACCTCGCAATGCTGCGCTGGGC
GTGCGGCGACGGGTGCCCCGTGGACGCGGACGCGTGCGCAAACGCCGCCG
CGCGCGGCCACCTCGCAGTGCTGCGCTGGCTGCGCGAGGAGGCGCGCGCG
CCGTGGGACGCGCGCACGTGCGCCGCCGCCGCGCGCGGGGGGCACCTGCA
CCGCGTGCTGGAGTGGGCGCGCGCCGCGGGTGCGCCGTGGGACGCGGCGA
TGGCGGCGGCGGCGGCGGCGCGCGGGCGGCTGCGCGTGCTGCGCTGGGCG
CACGACAGGGGGTGCCCCATGGACGAGCGCACGTGCGCCAACGCGGCCGG
CGGCGGCCACCTCGAGCTCCTGCGCTGGGCGCGCGAGCACGGCGCCCCCT
GGGACGCGCGCACCTGCAGCGCCGCGGCGGCACGCGGCCACCTGCGCGCG
CTGCAGTGGGCGCGCGCCAGCGGCTGCCCCTGGGACGCGGACTGCTGCAG
CAGGGCGGCGGCGGGGGGGTATCTGGAGTGCCTGCGGTGGGCGCTGGAGG
AGGGGGGGTGCCCCTGGGACGGGGGGGCGTGCCTGCGCCTCGCTGCGGGG
AACTGCCAGTACAAGGTGCTGCGGTACATCAAGGCGCGCATCTGCGAGGA
GCACGGGTGGTAG