mRNA_475 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|147292
Unique NamemRNA_475
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|147292 vs. uniprot
Match: A0A835YXJ3_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXJ3_9STRA)

HSP 1 Score: 296 bits (759), Expect = 9.320e-102
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 1
Query:    1 LLPQTYMSAFMEELVAVLLKNSNLLPAQRIHVRLASNFNMPPAFKATFYPEAESCKVPFVSKTICAYQLQDGEPVLAMAMFCQEYGNDAPAGNKRRVYVAYLDTAAYLDTAPNLAPGPARTATYQAMLQAYLARVQPRGFTAAHIRLHP 447
            LLPQTYMSAFMEELVAVLLKNSNLLPAQRIHVRLASNFNMPPAFKATFYPEAESCKVPFVSKTICAYQLQDGEPVLAMAMFCQEYGNDAPAGNKRRVYVAYLDTAAYLDTAPNLAPGPARTATYQAMLQAYLARVQPRGFTAAHIRLHP
Sbjct:    1 LLPQTYMSAFMEELVAVLLKNSNLLPAQRIHVRLASNFNMPPAFKATFYPEAESCKVPFVSKTICAYQLQDGEPVLAMAMFCQEYGNDAPAGNKRRVYVAYLDTAAYLDTAPNLAPGPARTATYQAMLQAYLARVQPRGFTAAHIRLHP 149          
BLAST of jgi.p|Trimin1|147292 vs. uniprot
Match: A0A836CEA1_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEA1_9STRA)

HSP 1 Score: 123 bits (309), Expect = 7.650e-33
Identity = 64/129 (49.61%), Postives = 85/129 (65.89%), Query Frame = 1
Query:   61 NSNLLPAQRIHVRLASN----FNMPPAFKATFYPEAESCKVPFVSKTICAYQLQDGEPVLAMAMFCQEYGNDAPAGNKRRVYVAYLDTAAYLDTAPNLAPGPARTATYQAMLQAYLARVQPRGFTAAHI 435
            N ++ P + +++ + SN    F+MPP +KA FYP  ES +V + SKT+CAYQ+ DG+PVL + +FCQEYG D    NK RVY+AYLDTAA+L       P  AR+A Y+ +L AYL  V  RGF  AHI
Sbjct:   14 NPDVQPDEVVYINVPSNMDTSFDMPPLYKAAFYPSVESSQVRYTSKTVCAYQMHDGQPVLVLVLFCQEYGIDTVEANKGRVYIAYLDTAAFL------LPVKARSAVYKDVLAAYLEWVARRGFRYAHI 136          
BLAST of jgi.p|Trimin1|147292 vs. uniprot
Match: A0A835Z6R2_9STRA (Histone acetyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6R2_9STRA)

HSP 1 Score: 112 bits (280), Expect = 5.120e-26
Identity = 57/112 (50.89%), Postives = 76/112 (67.86%), Query Frame = 1
Query:  100 LASNFNMPPAFKATFYPEAESCKVPFVSKTICAYQLQDGEPVLAMAMFCQEYGNDAPAGNKRRVYVAYLDTAAYLDTAPNLAPGPARTATYQAMLQAYLARVQPRGFTAAHI 435
            + ++F+MP  +KA  YP AES +V + SKT+CAYQ+ DG+PVL + +FCQEYG D    NK RVY+AYLDTAA+L       P  AR++ ++ +L AYL  V  RGF  AHI
Sbjct:    1 MGTSFDMPRLYKAALYPLAESSQVRYTSKTVCAYQMVDGQPVLVLVLFCQEYGLDTVEANKGRVYIAYLDTAAFLS------PVKARSSVHKEVLAAYLEWVARRGFRYAHI 106          
BLAST of jgi.p|Trimin1|147292 vs. uniprot
Match: A0A835Z6P2_9STRA (CBP/p300-type HAT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6P2_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 3.030e-17
Identity = 46/107 (42.99%), Postives = 68/107 (63.55%), Query Frame = 1
Query:    4 LPQTYMSAFMEELVAVLLK--NSNLLPAQRIHVRLASN----FNMPPAFKATFYPEAESCKVPFVSKTICAYQLQDGEPVLAMAMFCQEYGNDAPAGN---KRRVYV 297
            LP ++M+AF++E V    +  N ++ P + +H+ + SN    F+MP  +KA FYP AES +V + SKT+CAYQ+ DG+PVL + +FCQEY      G     RRVY+
Sbjct:   16 LPPSFMAAFIQEKVNHRQQELNPDIQPDELVHINVPSNMDTSFDMPRLYKAAFYPLAESFQVRYTSKTVCAYQVLDGQPVLVLVLFCQEYRARHRGGQLEVDRRVYM 122          
BLAST of jgi.p|Trimin1|147292 vs. uniprot
Match: A0A835YX18_9STRA (Histone acetyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX18_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.790e-15
Identity = 41/89 (46.07%), Postives = 56/89 (62.92%), Query Frame = 1
Query:  169 VPFVSKTICAYQLQDGEPVLAMAMFCQEYGNDAPAGNKRRVYVAYLDTAAYLDTAPNLAPGPARTATYQAMLQAYLARVQPRGFTAAHI 435
            +P  +K IC YQ+Q+G+ VL M ++C EYG DAPA N  RVY++YLDT A         P  ART  YQ ++ AY+  V+ RGF+  H+
Sbjct:  270 IPSTNKCICIYQVQEGQAVLLMVLYCHEYGKDAPACNAGRVYMSYLDTVALAK------PAEARTTIYQEVVAAYMDWVRRRGFSFMHL 352          
BLAST of jgi.p|Trimin1|147292 vs. uniprot
Match: A0A835ZA33_9STRA (Histone acetyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA33_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 6.860e-15
Identity = 39/89 (43.82%), Postives = 53/89 (59.55%), Query Frame = 1
Query:  169 VPFVSKTICAYQLQDGEPVLAMAMFCQEYGNDAPAGNKRRVYVAYLDTAAYLDTAPNLAPGPARTATYQAMLQAYLARVQPRGFTAAHI 435
            +P+ +K IC YQ+Q+G+ VL M ++C EYG DAPA N   VY++YLD  A         P  ART  YQ ++ AY   V+ RGF   H+
Sbjct:   86 IPYTNKCICIYQVQEGQAVLFMVLYCHEYGKDAPACNAGCVYLSYLDAVALAK------PAEARTTIYQEVVAAYTDWVRRRGFCFMHL 168          
BLAST of jgi.p|Trimin1|147292 vs. uniprot
Match: A0A835YPS5_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPS5_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.140e-13
Identity = 49/133 (36.84%), Postives = 74/133 (55.64%), Query Frame = 1
Query:   67 NLLPAQR--IHVRLASNF----NMPPAFKATFYPEAESCKVP----FVSKTICAYQLQDGEPVLAMAMFCQEYGNDAPAGNKRRVYVAYLDTAAYLDTAPNLAPGPARTATYQAMLQAYLARVQPRGFTAAHI 435
            ++LPA    I VR  SN     ++PP  +ATF   A    +P    + SK +C +QL DG  V++  ++  EYG+DAPA N+ RVY++YLD+  Y+       P   R+  Y+ +L AY   V+ RGF+  H+
Sbjct:   21 SVLPAGAPPIAVRFVSNCQKATSIPPPMQATFCA-APGVDLPRSILYTSKALCLFQLIDGAWVMSFMLYTYEYGDDAPACNRGRVYLSYLDSVPYIQ------PYTCRSVVYKTVLAAYFDWVRRRGFSTVHL 146          
BLAST of jgi.p|Trimin1|147292 vs. uniprot
Match: A0A2R5G0C5_9STRA (Histone acetyltransferase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G0C5_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 2.780e-13
Identity = 49/125 (39.20%), Postives = 68/125 (54.40%), Query Frame = 1
Query:   79 AQRIHVRLASNFN----MPPAFKATF--YPEAESCKVPFVSKTICAYQLQDGEPVLAMAMFCQEYGNDAPAGNKRRVYVAYLDTAAYLDTAPNLAPGPARTATYQAMLQAYLARVQPRGFTAAHI 435
            A ++H+R+ SNF+    + P  K     YP+A     PF S+ I  +Q  DG  VL  AMF QEYG+D P  N+R+VY+AYLD+  Y        P   RT  Y  +L  YL  ++  G T+A+I
Sbjct:  829 ADKLHIRVLSNFDEECKVKPFVKRLIPEYPDA----FPFRSRCIFLFQELDGVDVLFFAMFVQEYGSDCPDPNRRKVYIAYLDSVYYFQ------PRRLRTTVYHELLLGYLEYMRRDGMTSAYI 943          
BLAST of jgi.p|Trimin1|147292 vs. uniprot
Match: A0A835YIA2_9STRA (Histone acetyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIA2_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 6.690e-13
Identity = 55/151 (36.42%), Postives = 78/151 (51.66%), Query Frame = 1
Query:    4 LPQTYMSAFMEELVAVLLKNSNLLPAQRIHVRLASNFNM----PPAFKATFYP---EAESCKVPFVSKTICAYQLQDGEPVLAMAMFCQEYGNDAPAGNKRRVYVAYLDTAAYLDTAPNLAPGPARTATYQAMLQAYLARVQPRGFTAAHI 435
            LP++ +  FME  V    KN+    A  + VRL SN  +    PP   ATF     +     +P+ SK +C +Q  +G  VL   M+ QEY  DAPA N+ R Y++Y+D+AA+        P  ARTA Y+  + AY   V+ RGF   H+
Sbjct:  502 LPRSDVGDFMELRV----KNTQPADAPPLAVRLVSNTKLAMLVPPPVWATFRAAPGQPLPHVIPYSSKALCMFQQINGLWVLCFVMYVQEYSGDAPACNRGRAYISYIDSAAHWQ------PSSARTAAYKEFVVAYADWVRRRGFGWIHL 642          
BLAST of jgi.p|Trimin1|147292 vs. uniprot
Match: UPI001C9009EB (CREB-binding protein-like n=2 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=UPI001C9009EB)

HSP 1 Score: 74.3 bits (181), Expect = 1.310e-12
Identity = 52/149 (34.90%), Postives = 76/149 (51.01%), Query Frame = 1
Query:    4 LPQTYMSAFMEELVAVLLKNSNLLPAQRIHVRLASNFN----MPPAFKATFYPEAES-CKVPFVSKTICAYQLQDGEPVLAMAMFCQEYGNDAPAGNKRRVYVAYLDTAAYLDTAPNLAPGPARTATYQAMLQAYLARVQPRGFTAAHI 435
            LP T +  ++E  V   LK      A  + +R+ S+ +    + P  KA F    E   K P+ +K + A++  DG  V    M  QEYG+D+P  N+RRVY+AYLD+  +        P   RT+ Y  +L AYL  V+  G+T AHI
Sbjct: 1148 LPATKLGTYIENRVNNYLKKKES-GAGEVFIRVVSSSDKICEVKPGMKARFCDAGEMPAKFPYRAKALFAFEEVDGHEVCFFGMHVQEYGSDSPQPNRRRVYIAYLDSVHFFR------PRQFRTSVYHEILLAYLDYVKQLGYTMAHI 1289          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|147292 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YXJ3_9STRA9.320e-102100.00Histone acetyltransferase (Fragment) n=1 Tax=Tribo... [more]
A0A836CEA1_9STRA7.650e-3349.61Histone acetyltransferase (Fragment) n=1 Tax=Tribo... [more]
A0A835Z6R2_9STRA5.120e-2650.89Histone acetyltransferase n=1 Tax=Tribonema minus ... [more]
A0A835Z6P2_9STRA3.030e-1742.99CBP/p300-type HAT domain-containing protein n=1 Ta... [more]
A0A835YX18_9STRA1.790e-1546.07Histone acetyltransferase n=1 Tax=Tribonema minus ... [more]
A0A835ZA33_9STRA6.860e-1543.82Histone acetyltransferase n=1 Tax=Tribonema minus ... [more]
A0A835YPS5_9STRA1.140e-1336.84Histone acetyltransferase (Fragment) n=1 Tax=Tribo... [more]
A0A2R5G0C5_9STRA2.780e-1339.20Histone acetyltransferase n=1 Tax=Hondaea fermenta... [more]
A0A835YIA2_9STRA6.690e-1336.42Histone acetyltransferase n=1 Tax=Tribonema minus ... [more]
UPI001C9009EB1.310e-1234.90CREB-binding protein-like n=2 Tax=Amphibalanus amp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_3contigContig_3:1770778..1771224 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|147292|gw1.3.329.1
BRITEko00000,ko00001,ko01000,ko03000,ko03029,ko03036
KEGG Pathwayko04024,ko04066,ko04068,ko04110,ko04310,ko04330,ko04350,ko04520,ko04630,ko04720,ko04916,ko04919,ko04922,ko05016,ko05152,ko05161,ko05164,ko05165,ko05166,ko05167,ko05168,ko05169,ko05200,ko05203,ko05206,ko05211,ko05215,map04024,map04066,map04068,map04110,map04310,map04330,map04350,map04520,map04630,map04720,map04916,map04919,map04922,map05016,map05152,map05161,map05164,map05165,map05166,map05167,map05168,map05169,map05200,map05203,map05206,map05211,map05215
KEGG koko:K04498
EC2.3.1.48
Descriptionprotein propionyltransferase activity
COG categoryK
Max annot lvl33208|Metazoa
EggNOG OGsCOG5076@1|root,KOG1778@2759|Eukaryota,38G23@33154|Opisthokonta,3BAGN@33208|Metazoa
Evalue1.26e-14
Seed ortholog27923.ML274431a-PA
Hectar predicted targeting categoryother localisation
TranscriptId147614
TrackFilteredModels1
ProteinId147292
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|147292gene_475Tribonema minus UTEX_B_3156 geneContig_3 1770778..1771224 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_475_1exon_475_1Tribonema minus UTEX_B_3156 exonContig_3 1770778..1771224 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_475CDS_475Tribonema minus UTEX_B_3156 CDSContig_3 1770778..1771224 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|147292Trimin1|147292|gw1.3.329.1Tribonema minus UTEX_B_3156 polypeptideContig_3 1770778..1771224 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_475 ID=mRNA_475|Name=jgi.p|Trimin1|147292|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=447bp|location=Sequence derived from alignment at Contig_3:1770778..1771224- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTGTTGCCGCAGACGTATATGTCAGCTTTCATGGAGGAGCTGGTGGCAGT
GCTCCTCAAGAACTCTAACCTCTTGCCGGCTCAGCGTATCCACGTGCGCC
TCGCCAGCAACTTCAACATGCCGCCCGCCTTCAAGGCGACGTTCTACCCC
GAGGCTGAATCTTGCAAAGTGCCGTTTGTCAGCAAGACAATCTGCGCGTA
CCAGCTTCAGGATGGCGAGCCGGTTCTTGCCATGGCTATGTTCTGCCAGG
AGTACGGCAACGACGCACCGGCGGGCAACAAGCGCCGCGTGTATGTGGCA
TACCTGGACACTGCTGCGTACCTGGACACTGCGCCAAACCTGGCTCCCGG
CCCAGCGCGCACAGCTACATACCAGGCCATGCTGCAAGCGTACCTGGCAC
GGGTGCAGCCACGCGGCTTCACCGCTGCCCATATTCGCCTGCACCCA
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protein sequence of jgi.p|Trimin1|147292

>Trimin1|147292|gw1.3.329.1 ID=Trimin1|147292|gw1.3.329.1|Name=jgi.p|Trimin1|147292|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=149bp
LLPQTYMSAFMEELVAVLLKNSNLLPAQRIHVRLASNFNMPPAFKATFYP
EAESCKVPFVSKTICAYQLQDGEPVLAMAMFCQEYGNDAPAGNKRRVYVA
YLDTAAYLDTAPNLAPGPARTATYQAMLQAYLARVQPRGFTAAHIRLHP
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mRNA from alignment at Contig_3:1770778..1771224-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_475 ID=mRNA_475|Name=jgi.p|Trimin1|147292|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=447bp|location=Sequence derived from alignment at Contig_3:1770778..1771224- (Tribonema minus UTEX_B_3156 )
CTGTTGCCGCAGACGTATATGTCAGCTTTCATGGAGGAGCTGGTGGCAGT GCTCCTCAAGAACTCTAACCTCTTGCCGGCTCAGCGTATCCACGTGCGCC TCGCCAGCAACTTCAACATGCCGCCCGCCTTCAAGGCGACGTTCTACCCC GAGGCTGAATCTTGCAAAGTGCCGTTTGTCAGCAAGACAATCTGCGCGTA CCAGCTTCAGGATGGCGAGCCGGTTCTTGCCATGGCTATGTTCTGCCAGG AGTACGGCAACGACGCACCGGCGGGCAACAAGCGCCGCGTGTATGTGGCA TACCTGGACACTGCTGCGTACCTGGACACTGCGCCAAACCTGGCTCCCGG CCCAGCGCGCACAGCTACATACCAGGCCATGCTGCAAGCGTACCTGGCAC GGGTGCAGCCACGCGGCTTCACCGCTGCCCATATTCGCCTGCACCCA
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Coding sequence (CDS) from alignment at Contig_3:1770778..1771224-

>mRNA_475 ID=mRNA_475|Name=jgi.p|Trimin1|147292|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=447bp|location=Sequence derived from alignment at Contig_3:1770778..1771224- (Tribonema minus UTEX_B_3156 )
CTGTTGCCGCAGACGTATATGTCAGCTTTCATGGAGGAGCTGGTGGCAGT
GCTCCTCAAGAACTCTAACCTCTTGCCGGCTCAGCGTATCCACGTGCGCC
TCGCCAGCAACTTCAACATGCCGCCCGCCTTCAAGGCGACGTTCTACCCC
GAGGCTGAATCTTGCAAAGTGCCGTTTGTCAGCAAGACAATCTGCGCGTA
CCAGCTTCAGGATGGCGAGCCGGTTCTTGCCATGGCTATGTTCTGCCAGG
AGTACGGCAACGACGCACCGGCGGGCAACAAGCGCCGCGTGTATGTGGCA
TACCTGGACACTGCTGCGTACCTGGACACTGCGCCAAACCTGGCTCCCGG
CCCAGCGCGCACAGCTACATACCAGGCCATGCTGCAAGCGTACCTGGCAC
GGGTGCAGCCACGCGGCTTCACCGCTGCCCATATTCGCCTGCACCCA
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