mRNA_4746 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|160000
Unique Name	mRNA_4746
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|160000 vs. uniprot
Match: A0A835ZDW1_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDW1_9STRA)

HSP 1 Score: 259 bits (663), Expect = 3.040e-81
Identity = 342/342 (100.00%), Postives = 342/342 (100.00%), Query Frame = 1

Query:    1 PPDERTCAYAALGGQMALLRALRARGCPWDVFTTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKCHEAAAFTGRLDVLECVLGAEHHACAAPDERTCAYAAFGGQLALLQELRAKGCPWDVFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGHTCQWRERTAEAXXXXXXXXXXXXAVQHGCPWDADKCHEVATSCEVRAWIRRQQADSDAFHPQHPVSD 1026
            PPDERTCAYAALGGQMALLRALRARGCPWDVFTTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKCHEAAAFTGRLDVLECVLGAEHHACAAPDERTCAYAAFGGQLALLQELRAKGCPWDVFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGHTCQWRERTAEAXXXXXXXXXXXXAVQHGCPWDADKCHEVATSCEVRAWIRRQQADSDAFHPQHPVSD
Sbjct:    1 PPDERTCAYAALGGQMALLRALRARGCPWDVFTTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKCHEAAAFTGRLDVLECVLGAEHHACAAPDERTCAYAAFGGQLALLQELRAKGCPWDVFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGHTCQWRERTAEAXXXXXXXXXXXXAVQHGCPWDADKCHEVATSCEVRAWIRRQQADSDAFHPQHPVSD 342

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BLAST of jgi.p|Trimin1|160000 vs. uniprot
Match: A0A835ZGS4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGS4_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.240e-18
Identity = 45/55 (81.82%), Postives = 46/55 (83.64%), Query Frame = 1

Query:  433 AAAFTGRLDVLECVLGAEHHACAAPDERTCAYAAFGGQLALLQELRAKGCPWDVF 597
            AAA  GRLDVLEC LGA HH CA PDERTC YAA GGQLALLQ LRA+GCPWDVF
Sbjct:  124 AAAQAGRLDVLECTLGAHHHICAPPDERTCGYAALGGQLALLQALRAEGCPWDVF 178

[Close]

BLAST of jgi.p|Trimin1|160000 vs. uniprot
Match: A0A836CNM7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNM7_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 6.990e-7
Identity = 26/31 (83.87%), Postives = 29/31 (93.55%), Query Frame = 1

Query:    1 PPDERTCAYAALGGQMALLRALRARGCPWDV 93
            PPD+ TCAYAALGGQ+ALL+ALRA GCPWDV
Sbjct:  119 PPDKLTCAYAALGGQLALLQALRAEGCPWDV 149

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|160000 vs. uniprot

BLAST of jgi.p|Trimin1|160000 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A835ZDW1_9STRA	3.040e-81	100.00	Ankyrin repeat-containing domain protein n=1 Tax=T...	[more]
A0A835ZGS4_9STRA	1.240e-18	81.82	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A836CNM7_9STRA	6.990e-7	83.87	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_11	contig	Contig_11:463043..467225 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|160000\|e_gw1.11.204.1
Hectar predicted targeting category	other localisation
TranscriptId	160322
Track	FilteredModels1
ProteinId	160000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|160000	gene_4746	Tribonema minus UTEX_B_3156	gene	Contig_11 463043..467225 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_4746_1	exon_4746_1	Tribonema minus UTEX_B_3156	exon	Contig_11 463043..463474 +
exon_4746_2	exon_4746_2	Tribonema minus UTEX_B_3156	exon	Contig_11 466629..467225 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_4746	CDS_4746	Tribonema minus UTEX_B_3156	CDS	Contig_11 463043..463474 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|160000	Trimin1\|160000\|e_gw1.11.204.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_11 463043..467225 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_11:463043..467225+
coding sequence from alignment at Contig_11:463043..467225+

spliced messenger RNA

>mRNA_4746 ID=mRNA_4746|Name=jgi.p|Trimin1|160000|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1029bp|location=Sequence derived from alignment at Contig_11:463043..467225+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCGCCCGACGAGCGCACGTGCGCGTACGCCGCGCTCGGCGGCCAGATGGC
GCTGCTGCGCGCGCTGCGCGCAAGGGGCTGTCCCTGGGACGTCTTCACGA
CGCGCTTTGCGGCGCGCGCGGGGCACCTCCACGTGCTGCAGTGGGCGCGC
GCGCACGGCTGTCCCTGGGACGTCGTCGCGTCGTGGTGCGCCGCCGCGCA
CGGCCATGTGCACGTGCTGCGCTGGGCCGCCGCCAACGGCTGCGCGCTCA
ACGCGGTGACGTGCCAGTGCGCCGCGCAGAGCGGCCAGCTGCACGCGCTG
CAGTGGCTGCGCGCACAGGGCTGCGCGTGGGACGCGAGCGCGGCGGAGGC
GGCGGCGCGCGTCGGCGACCTCGAGTGCCTGCAGTGGGCGGTGCGGCAGG
GGTGCCCGTGGGACGCCAAGAAGTGCCACGAGGCCGCCGCGTTCACCGGC
CGCCTCGACGTGCTCGAGTGCGTGCTCGGCGCTGAGCATCACGCCTGCGC
GGCGCCGGACGAGCGCACCTGCGCGTACGCCGCGTTCGGCGGCCAGCTTG
CGCTGCTGCAAGAGTTGCGTGCGAAAGGCTGTCCCTGGGACGTCTTCACG
TGCCGCTTCGCCGCGCGGGGGGGGCACCTCCACGTGCTGCAGTGGGCGCG
CGCGGACGGCTGTCCCTACGACGTTGCTGCCACATGGCACGCTGCCGCAG
GTAACCACACTCACGTGCTGAGCTGGCTCGCCGCAAACGGCTGCCCCCCA
GGCGAGTGGACAGACGTGATTGCCGCGCACTATGGGCGCCTGCAGGTGCT
GCAGTGGCTGCGCGCGCAGGGCCACACGTGCCAGTGGCGTGAACGCACTG
CGGAGGCTGCGGCGCGTCATGGGCACCTGCAGTGCCTGCAGTGGGCGGTG
CAGCACGGGTGTCCATGGGACGCCGACAAGTGCCACGAGGTCGCCACGAG
CTGCGAGGTGCGCGCGTGGATCCGTAGGCAGCAAGCCGACTCGGATGCAT
TCCATCCTCAGCACCCAGTCTCAGACTGA

protein sequence of jgi.p|Trimin1|160000

>Trimin1|160000|e_gw1.11.204.1 ID=Trimin1|160000|e_gw1.11.204.1|Name=jgi.p|Trimin1|160000|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=343bp
PPDERTCAYAALGGQMALLRALRARGCPWDVFTTRFAARAGHLHVLQWAR
AHGCPWDVVASWCAAAHGHVHVLRWAAANGCALNAVTCQCAAQSGQLHAL
QWLRAQGCAWDASAAEAAARVGDLECLQWAVRQGCPWDAKKCHEAAAFTG
RLDVLECVLGAEHHACAAPDERTCAYAAFGGQLALLQELRAKGCPWDVFT
CRFAARGGHLHVLQWARADGCPYDVAATWHAAAGNHTHVLSWLAANGCPP
GEWTDVIAAHYGRLQVLQWLRAQGHTCQWRERTAEAAARHGHLQCLQWAV
QHGCPWDADKCHEVATSCEVRAWIRRQQADSDAFHPQHPVSD*

mRNA from alignment at Contig_11:463043..467225+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4746 ID=mRNA_4746|Name=jgi.p|Trimin1|160000|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4183bp|location=Sequence derived from alignment at Contig_11:463043..467225+ (Tribonema minus UTEX_B_3156 )
CCGCCCGACGAGCGCACGTGCGCGTACGCCGCGCTCGGCGGCCAGATGGC
GCTGCTGCGCGCGCTGCGCGCAAGGGGCTGTCCCTGGGACGTCTTCACGA
CGCGCTTTGCGGCGCGCGCGGGGCACCTCCACGTGCTGCAGTGGGCGCGC
GCGCACGGCTGTCCCTGGGACGTCGTCGCGTCGTGGTGCGCCGCCGCGCA
CGGCCATGTGCACGTGCTGCGCTGGGCCGCCGCCAACGGCTGCGCGCTCA
ACGCGGTGACGTGCCAGTGCGCCGCGCAGAGCGGCCAGCTGCACGCGCTG
CAGTGGCTGCGCGCACAGGGCTGCGCGTGGGACGCGAGCGCGGCGGAGGC
GGCGGCGCGCGTCGGCGACCTCGAGTGCCTGCAGTGGGCGGTGCGGCAGG
GGTGCCCGTGGGACGCCAAGAAGTGCCACGAGGTCGCCACGAGCCGCGAG
CTGCGCACGTGGATCCGCAGGCAGCGGCGCGACGTGCGCCATGCGCAGGC
TGCGGCGCCCTGATTGCAGCGGTGGCAGGATCGTCTTTGCTCGGAGATGC
CACTACTAGTAGAAGCTGCGAGCCACCAGGCCAGGGTCCAAGCAGGAGCT
GCTCTCACGTTGCGGCTGAAGTGCAGAGCGGCAGACGCGAGGCAGGCAGC
GACAGCCGCGTTTCAGGTCGCCGCACTGTGCTCGGAGCGACGCGGCAGCC
TGTGCGCTCGTGTTCGCAACTGCCGCTGTGGCACCGCCGCCGCCGCTGAA
GTTGCCGCCGCCATTGGGCATTGGTAGGTTGGTATGCTGCCGTCGCTGCT
GATTTCTTCTCAGCCGCTGCAGCTGCCGCTGCTGCCATCTGCCGCCGCCG
GTACCGCAACTCCTGCTGCTGCTCGACAGATGCAGGAAGGGGTGCCCTAT
AGAAGGGGCACGCATCACAGAGGCCTGCAGGCAGATGATAACATCCACCT
GTTCTCCCTTCCCTCCGTAGTTGGACCGCGGTAAGTATTGCAGATTTTGA
TGGCCCAGGGCGCTTGTTCTGGCCGTTTTGTGAGTGGGCAGTGCCCGAGT
GGGCGCACTCCTGTGCTGTGCAGCGGCAGTGATCATGCACCCAGTGCTGA
GCAGGGCGTGTCACACTGGCTGTACATGCGTACCTACCCCAAGTCACGTT
TTGTGTACTGAAGCTGCCACGCAATGCTCGCGTGGCACACGTGGGTTGTT
TGCAGCGCTGCGCTTCACTCGGCATATGGCGGGTGTCTTCAACAGTAATG
CAGCGCTATTGTGTACTTTGGTGTACGCGTGTACCCCTGTGACTGCAGGC
ATGATCATCAACCTGTGTGGTGGTGCCTGGTTTGATTTCCTGTATTGTGT
TGTACTATGTTGTCTGGGCGCTGATTATTGCCATGTACATTGCCATACTG
CAGGCAAGCGCGCAATTGTTTGCAAGTGACTGTTGTATTTAAATGTGAAG
ACACTGATGAAACTCCACACGGCTACTGGTGTAGAAGCACTCCAAAGTTA
TAAGATGGTTCTGCTTTTGTGTTGGAGCTGAGACCTTCCCTGTGATTTCT
CTGCTGGGCTGGCTTCAGTGGTCTTCTGCTTATTTATAAATTTGTCCAGA
AGCAACTTACTCGGCTTGACTTGATTCAGAGACTCGAGATCACTTACACT
GCCACTGAATGGACAGACCCAAACATCATACCAGCAGAACTACAGTGGGA
GCCAGCACAGGCTTCTGGTTCAGGATTATTCCACCAACAGACCTAGACCT
TGTGACCGTGTCAGTAATGTTGATGATGACTTATTACTGGTCTGCCACAG
GTAGTCGCTGATAAACAAGTGAGTCGTACATAAATTGCACCAACGTTCGC
TTCAAAGCCCTGGTGTGACATTACTTGTGCAACATTGCTCACGTCAGTTT
CCGGCCTGCGATCAGGATTCTCTGTGAACACATGCTCACAGGTTGCGTTT
TGCCGACTGCCATGTGAGGGTAAGAAGGCACAGCGAGACGCGCTCGTCAT
GGAGGCAACCTCAAGGTTGACCTCGGGCGTGGCTGAGCGTACGACCCGGC
GCTGGTGCGGCGCCCGTGCCAGTGGTCAAAATAGCAGTCGCCACAATGAT
CCTCAAGCGACCGTGGTCATCTTGATAGACGGGTGGTCATGCAGCCTCAG
CTGCCCAGCTGGCACATGCGGGGTTACGACGTGATGCAGACCGCCCGGTC
GTTGCGTCCAGCGCATTTGAAGGCAGCACTTTGTGTCGGTTGCCCATAGT
GAGAACGCAAGCGGCTTTGCGGTTCCGTGATATCGGGCAGACATCGTCAT
ATTGCTGCATTGACCCAGGGACTCCGTACTCCCAGTCATGATGCGTTGAC
CACTGCTAAATCATCGTTTCAGCAGGATCTACCGCAACAACGGCACCGTG
CTGAACACAAGTATGCAGTGAGTTTGTAACCTAAGGCGTAACGAATGCCT
CGTCAAGGATGGCTATGCTGCCGCGGGAGGAGAAGCACTGCACTGGCACC
ACCACCCCTTGCACTCCCTTAGTACCGTTCTCCAGGTCATGGTGTTACGA
GATGGCTGGGCAAGCAGATGGAGCTGTTTGTGAAGGAGTTGGCAATGCAC
TCAGCGTTGTGCGTCGACGAGGAAGGAGGCGGGCGTAGGAGGTTTAGGTT
TGCAGCGTCAGCATGTTGTCCCCCGGGCGTGGACCCGGCGGATGCGGATG
GCGTAACAGTCGCGCGCTGGATCACAATCATTACCTCATCAACCTGAAGT
TTGAGATGGCGACACAACAGGTATGCTGTGCTGAGTATTACGATGTCGGC
TCAGGCGATCTTCGAATTGATTGAAGCGTCAGGCAGAGTGCCGTGGCTGC
TTGGAGGCGTGGTGACTGCCGGTCTCACTGCAAGCGTAACCACAGAGGCC
CTGCGAAGATATCGACACCGACGTGCGATGGCACATCGCGGTGAGCTATT
GCGTATCACTTGACTAGGAGCTTGACATGAAGCTCTGGCGGATGTTCATT
GAAAGGCATCTGGCAATCGCTACGTACACTATAAGATTGGCGTGCATGTG
ACTGCGTCTCGACCGTGTCCGTTCGATGTGACACGCTCTCCGACCGGCTG
CTGATAAGTTGAGATCTACTGGGGCAAACTGGCGTAATTGATAATAATTG
CAAAGCGTGAGCGCATTCAGCCACCGCACACCTCTCACTTGACGTTACGC
AACTCAGCTTACCGCGCTAACGCCTTCATATGACCCCCCCCCCCGCAGAT
GCGGAACGCCACTCCACCGAGCCATTAGATGATTTCTGGACAGAAATCCT
GAGCATGGTGGGCCCCATGCACTACCTCCAGATTGCGCCCGTTTGCCGAG
CCTGGAACACTGAGTACCGGCGGCTATTCCAGGGGAGGACAAGCTCACAT
CGCTCCGTAACCGCATCAGTACCCCTCTTGCAGTGGGCCGTTAGCCAGGG
CTGCCTCGGGCCCTGCCACTACCGTGCTCCGCCGGCGGGGCACATGAACG
CAGCGCCCGCGACCTACTACAACTTCACATGCCCCAAGTGGTTTTCCGTG
AGGCGCAACACGCGCGGCCTGCAGGCGCTGCACCAGGCCGCCGCGTTCAC
CGGCCGCCTCGACGTGCTCGAGTGCGTGCTCGGCGCTGAGCATCACGCCT
GCGCGGCGCCGGACGAGCGCACCTGCGCGTACGCCGCGTTCGGCGGCCAG
CTTGCGCTGCTGCAAGAGTTGCGTGCGAAAGGCTGTCCCTGGGACGTCTT
CACGTGCCGCTTCGCCGCGCGGGGGGGGCACCTCCACGTGCTGCAGTGGG
CGCGCGCGGACGGCTGTCCCTACGACGTTGCTGCCACATGGCACGCTGCC
GCAGGTAACCACACTCACGTGCTGAGCTGGCTCGCCGCAAACGGCTGCCC
CCCAGGCGAGTGGACAGACGTGATTGCCGCGCACTATGGGCGCCTGCAGG
TGCTGCAGTGGCTGCGCGCGCAGGGCCACACGTGCCAGTGGCGTGAACGC
ACTGCGGAGGCTGCGGCGCGTCATGGGCACCTGCAGTGCCTGCAGTGGGC
GGTGCAGCACGGGTGTCCATGGGACGCCGACAAGTGCCACGAGGTCGCCA
CGAGCTGCGAGGTGCGCGCGTGGATCCGTAGGCAGCAAGCCGACTCGGAT
GCATTCCATCCTCAGCACCCAGTCTCAGACTGA

Coding sequence (CDS) from alignment at Contig_11:463043..467225+

>mRNA_4746 ID=mRNA_4746|Name=jgi.p|Trimin1|160000|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1029bp|location=Sequence derived from alignment at Contig_11:463043..467225+ (Tribonema minus UTEX_B_3156 )
CCGCCCGACGAGCGCACGTGCGCGTACGCCGCGCTCGGCGGCCAGATGGC
GCTGCTGCGCGCGCTGCGCGCAAGGGGCTGTCCCTGGGACGTCTTCACGA
CGCGCTTTGCGGCGCGCGCGGGGCACCTCCACGTGCTGCAGTGGGCGCGC
GCGCACGGCTGTCCCTGGGACGTCGTCGCGTCGTGGTGCGCCGCCGCGCA
CGGCCATGTGCACGTGCTGCGCTGGGCCGCCGCCAACGGCTGCGCGCTCA
ACGCGGTGACGTGCCAGTGCGCCGCGCAGAGCGGCCAGCTGCACGCGCTG
CAGTGGCTGCGCGCACAGGGCTGCGCGTGGGACGCGAGCGCGGCGGAGGC
GGCGGCGCGCGTCGGCGACCTCGAGTGCCTGCAGTGGGCGGTGCGGCAGG
GGTGCCCGTGGGACGCCAAGAAGTGCCACGAGGCCGCCGCGTTCACCGGC
CGCCTCGACGTGCTCGAGTGCGTGCTCGGCGCTGAGCATCACGCCTGCGC
GGCGCCGGACGAGCGCACCTGCGCGTACGCCGCGTTCGGCGGCCAGCTTG
CGCTGCTGCAAGAGTTGCGTGCGAAAGGCTGTCCCTGGGACGTCTTCACG
TGCCGCTTCGCCGCGCGGGGGGGGCACCTCCACGTGCTGCAGTGGGCGCG
CGCGGACGGCTGTCCCTACGACGTTGCTGCCACATGGCACGCTGCCGCAG
GTAACCACACTCACGTGCTGAGCTGGCTCGCCGCAAACGGCTGCCCCCCA
GGCGAGTGGACAGACGTGATTGCCGCGCACTATGGGCGCCTGCAGGTGCT
GCAGTGGCTGCGCGCGCAGGGCCACACGTGCCAGTGGCGTGAACGCACTG
CGGAGGCTGCGGCGCGTCATGGGCACCTGCAGTGCCTGCAGTGGGCGGTG
CAGCACGGGTGTCCATGGGACGCCGACAAGTGCCACGAGGTCGCCACGAG
CTGCGAGGTGCGCGCGTGGATCCGTAGGCAGCAAGCCGACTCGGATGCAT
TCCATCCTCAGCACCCAGTCTCAGACTGA