mRNA_4740 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|347363
Unique NamemRNA_4740
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|347363 vs. uniprot
Match: A0A836CMC9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMC9_9STRA)

HSP 1 Score: 229 bits (583), Expect = 6.290e-76
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1 
Query:    1 MSESVRSRIDKVKKKLRKAKNDGDSTEVGKLREALSALRAQDPLFSREDQYKAAILEGRFAAAAKLKLTIDKMKQENPLRPPAEDDHDPGEDMSWGFDPSFHARPEDDTPEGWMDI 348
            MSESVRSRIDKVKKKLRKAKNDGDSTEVGKLREALSALRAQDPLFSREDQYKAAILEGRFAAAAKLKLTIDKMKQENPLRPPAEDDHDPGEDMSWGFDPSFHARPEDDTPEGWMDI
Sbjct:    1 MSESVRSRIDKVKKKLRKAKNDGDSTEVGKLREALSALRAQDPLFSREDQYKAAILEGRFAAAAKLKLTIDKMKQENPLRPPAEDDHDPGEDMSWGFDPSFHARPEDDTPEGWMDI 116
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347363 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CMC9_9STRA6.290e-76100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_11contigContig_11:434551..437824 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|347363|estExt_Genemark1.C_Ctg_110052
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_001650.1
TranscriptId347685
TrackFilteredModels1
ProteinId347363
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347363gene_4740Tribonema minus UTEX_B_3156 geneContig_11 434551..437824 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4740_3exon_4740_3Tribonema minus UTEX_B_3156 exonContig_11 434551..434691 -
exon_4740_2exon_4740_2Tribonema minus UTEX_B_3156 exonContig_11 435364..435519 -
exon_4740_1exon_4740_1Tribonema minus UTEX_B_3156 exonContig_11 437765..437824 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_4740UTR3_4740Tribonema minus UTEX_B_3156 three_prime_UTRContig_11 434551..434556 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4740CDS_4740Tribonema minus UTEX_B_3156 CDSContig_11 437765..437824 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347363Trimin1|347363|estExt_Genemark1.C_Ctg_110052Tribonema minus UTEX_B_3156 polypeptideContig_11 434557..437824 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4740 ID=mRNA_4740|Name=jgi.p|Trimin1|347363|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=357bp|location=Sequence derived from alignment at Contig_11:434551..437824- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGAGAGCGTGAGATCCAGAATCGACAAGGTCAAGAAGAAGCTGCG
AAAGGCGAAGAATGACGGCGATTCCACGGAGGTGGGCAAGCTCAGGGAGG
CTCTCTCTGCGCTACGGGCGCAAGACCCCCTGTTCTCGCGGGAGGACCAG
TACAAGGCTGCTATTTTGGAGGGGCGCTTTGCAGCCGCTGCGAAGCTCAA
GCTCACCATTGACAAGATGAAGCAGGAGAACCCCCTGCGCCCCCCCGCTG
AGGACGACCACGACCCTGGAGAGGACATGTCGTGGGGGTTTGACCCCTCC
TTCCACGCGCGTCCAGAGGATGATACCCCCGAGGGATGGATGGACATCTG
ATCGCCC
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protein sequence of jgi.p|Trimin1|347363

>Trimin1|347363|estExt_Genemark1.C_Ctg_110052 ID=Trimin1|347363|estExt_Genemark1.C_Ctg_110052|Name=jgi.p|Trimin1|347363|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=117bp
MSESVRSRIDKVKKKLRKAKNDGDSTEVGKLREALSALRAQDPLFSREDQ
YKAAILEGRFAAAAKLKLTIDKMKQENPLRPPAEDDHDPGEDMSWGFDPS
FHARPEDDTPEGWMDI*
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mRNA from alignment at Contig_11:434551..437824-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4740 ID=mRNA_4740|Name=jgi.p|Trimin1|347363|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3274bp|location=Sequence derived from alignment at Contig_11:434551..437824- (Tribonema minus UTEX_B_3156 )
ATGAGCGAGAGCGTGAGATCCAGAATCGACAAGGTCAAGAAGAAGCTGCG
AAAGGCGAAGGTGGGTTAAAATATGGATCTTTCGAAGTTCAATGTTGCAG
GTTTTCCGGCTGTGCCTGTGGTATATATATATCTGCCCTTGGCCGATGTC
GCCTAGTTTCGACCTGGTGCATTGGACACGTAGTGGTGACGTTACATTCA
GAAGCTGTCAGCGCAGTGGCGCGTGTTTGTGTTTTATTTGTATGTAATTG
TAGTTGCAGGCAACGTAAATCAGCTCACGCATGAATGTCATGTGGTAATG
GTAAATTTTGCAATACACTAAACACCAATCTGTCAAGGAATGGTCGATGT
CGGCAATTCTTGTCGCGTACACAACTGTCTCAGAGAATGGGGCAGCAAAG
CGATGCCAAATATACTGCTCTTGCTGTATTGACAATGTACTGCTACAGCA
CATAGCTTGATGTATGGACACAGCATGCATGTACGACCGCACGCATCTCA
TTCAAAAAACAGTGAAGGCTACAATGAAACTCAAGTGCTGTAACAGCAGA
GGGGCTCTGCTGGGGAGCTTCAGCACTGGTTTGAAATGAACAAAGATGGG
CGTTAATGAACCCTCCGCTGAACAACATGTCACCATTCGTCAATCATGGC
CTTGCAACCATCGTTGCCACCCTTCAAATTTGACAGTCAATCACATTGTA
CATGTGTGTTGAGCCTCTGTGCCTGCCACGGTCCACTGCGCCGTTATGAT
GTGCACCGTGCAAATCCACCTTGTCGAATGTGTAGAGATGTGGGGCAGAG
ATTATTGAGCACATGCTCTCTGTCCGAGAAGCACTGTGGGAAAAAGGGGG
GGGGGGGGGGGGCAGGCGAGAGGTTTAGGAGGAGGCTGTATGGAGGCAGA
GGCGACACGCAACATTGGTGGGTGTGGTTGAGCGTTGTGACATTTGTTGG
TCGGCTGCTTCATGCCCTCATCGAGCATGCACGAAAGAATTACTAAAGGT
GTAATTGGAACTGGAACATCAAAGGCGATTGGAAGAAAAGCGCCCAATGT
TCGGAGAGGGGGTTAGCACCGAAGCGCGGGGAAGGGTGAAAGCGGGAAAG
GGGATTGTAAGTAAGCAAGGTGCAGTATTTGTAGCATTTAATACATAGAC
TGTTGCCATACCGAGTGCGTCCAAGTGCCCCATGTGACGAAATAAGCACA
GGAGCGCTGGGGTATGTATGTATGCGGGAATGCAGCACTGCTCAGCTGAG
TACGGGCGCCGTTGCGCATGGCTCAGCTTGCGTGGCGGTGCGCACTTGTG
CGCGGCGTTGAGGTGTAGTTGCAACTGGAAGGGGGGTGTCATCAAGGTGT
ATTATATGTAGCATTCGCCGGACTGTCACCGTCTTGAGTGTGCAAAGTTG
CCCCATGGCGAAACACGCACAGGACTGCGGGGGTATGTGTATACTCAAGA
ATGCAACACTGCTCACTGATCATCATCGCATTGGACATGGCTGAGCTTGC
GTTGACACTGCGCGCGCATGAAGCGGCCCGCTCTCATCGGATCTGTGAAT
GCACAGCTGTCAGCCTCTACCTGATCAGCTCTTATCTGGGGGAGCAGGCT
GAAGTGGCAGCACGTTGAGGCTACCCGCCTGTTGCTCAACAATATCACTT
CAAAAGTACATCAGTCACTCTGTGGTGAATCACTGGCGATGGGGTGGCGC
CCTGCAAACGCAGTGTTTCGACAGCATGCGCAGTTCAGCATCGCGACAGA
TGGGTGCATATTTCATGTGCTTGTGACTCATGCTTCAGACTCGTGAGTCA
CGAGCCCTTGTGGACCTTGGCGGCATGCCAACAATACGTGATCAAGAGGC
ATGCATCATCCAACAGAGAGTGAATGTCAATTCACATGATCAAGAGGCAT
GCGGCACTCAAAAGGAGTGGCTGAGCACTGCGTACATAGCTGCGCATATG
CACATACACGTGGCGATGATACCTTATGTTTAGCGCTGCGTGTTGTGCTT
TCATAATGACCGTACAGGCTTGTGCGAACTCTACGCACAAACTATTACTT
TAATTCAAAACCCTACTTAGTCCTTCAATTTTTACTCGCCTGTGGTGTGA
CTTTGTGAGCCTCGAGTCATTAGTATAGCCCCTTCGGCGTCCAATGAGCT
GAATGACGACGACTTCACACAGGTGTGCAAATCATAATGAGTCATGAGTC
ATTACATTTCTCCGATGTGAATAATCACGGCGACGCTACGGAGGTGGACT
CGCTTGTGTGACTTGTGAGTCATGAGTCACAAGTAATTTGATTTGTGATG
TGCAGAATGACGGCGATTCCACGGAGGTGGGCAAGCTCAGGGAGGCTCTC
TCTGCGCTACGGGCGCAAGACCCCCTGTTCTCGCGGGAGGACCAGTACAA
GGCTGCTATTTTGGAGGGGCGCTTTGCAGCCGCTGCGAAGCTCAAGCTCA
CCATTGACAAGGTATGCATCAGGGTATGTATCATGTGGCGAGTGGAATGA
CAGATGTGTCAGAGCTGGAACGCATTATTGACAAGGTGCCGTGTGGCGAG
CAGTACCACGGTGGTGTCATGATGCCCTTATATTTACAGTACTTCTGAAG
ACATGTGTGCAATGCCCGCATCATTACAAACCAGTTTACAGAGCAAGTGA
TGGTGCACATCTACTTCTGCAGACCTATGAGCAATGCCCGCATCAGTACA
CTTCAATTTACAGAGCGAATGAAGGTGCACATCTATTTTCAAGAAGTACG
TGAATTTAAACAAACTGTGCGTCACAGTACACAAATTTCATATCAATCGT
CGGCGGCAGCTGCAAGCTTCACCTCACCACTGATAAGGTTCATTGACAAG
GTATGATGTCGGCGAGCGCTGCCGCAGTGAAATCATATATTTGTAAAATA
GCTAGCTACACGCACCGTATCCCGATCTGAGGTGGCTGCGCTTCAGCTGC
ATTGCGCGATGAGGTAGGAGCCCCCTTCACCGCAACTTGAACCCACTAGC
GCGGACAGCGATGCCATCGCAGCTCTTCCGTGCTTCACCCCAGCAACCTC
GCTTTAAGCGCCGTGCACTCCAGTGTTGCTGACCCGCAACTTCAACAACT
TGATCCTGCCACTCCCGCGCTGCCGCTGCGCAGATGAAGCAGGAGAACCC
CCTGCGCCCCCCCGCTGAGGACGACCACGACCCTGGAGAGGACATGTCGT
GGGGGTTTGACCCCTCCTTCCACGCGCGTCCAGAGGATGATACCCCCGAG
GGATGGATGGACATCTGATCGCCC
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Coding sequence (CDS) from alignment at Contig_11:434551..437824-

>mRNA_4740 ID=mRNA_4740|Name=jgi.p|Trimin1|347363|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=351bp|location=Sequence derived from alignment at Contig_11:434551..437824- (Tribonema minus UTEX_B_3156 )
ATGAGCGAGAGCGTGAGATCCAGAATCGACAAGGTCAAGAAGAAGCTGCG
AAAGGCGAAGAATGACGGCGATTCCACGGAGGTGGGCAAGCTCAGGGAGG
CTCTCTCTGCGCTACGGGCGCAAGACCCCCTGTTCTCGCGGGAGGACCAG
TACAAGGCTGCTATTTTGGAGGGGCGCTTTGCAGCCGCTGCGAAGCTCAA
GCTCACCATTGACAAGATGAAGCAGGAGAACCCCCTGCGCCCCCCCGCTG
AGGACGACCACGACCCTGGAGAGGACATGTCGTGGGGGTTTGACCCCTCC
TTCCACGCGCGTCCAGAGGATGATACCCCCGAGGGATGGATGGACATCTG
A
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