mRNA_4738 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|160005
Unique NamemRNA_4738
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|160005 vs. uniprot
Match: A0A836CNM7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNM7_9STRA)

HSP 1 Score: 432 bits (1110), Expect = 1.940e-146
Identity = 422/422 (100.00%), Postives = 422/422 (100.00%), Query Frame = 1 
Query:    1 MHYLQIALVCRAWNAEYRWQFPDTDTLTSLRSVTASVPLLRWAISHGCLGSCRDHCEGHTDAAYTDLVYAAFDEFPKWTLVDAGRGTCGAQALCRAAAFTGRLDVLTCALGADHRFCAPPDKLTCAYAALGGQLALLQALRAEGCPWDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQHCRINNCYSRTCAYAALGGQLALLQALRAEGCPWDVFTXXXXXXXXXXXXXXXXXXXXXXXXNSITFSCXXXXXXXXXXXXXXXXDHHPDESTCRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCRMVATSSEMRTWIRRQQAAERHAPYYCV 1266
            MHYLQIALVCRAWNAEYRWQFPDTDTLTSLRSVTASVPLLRWAISHGCLGSCRDHCEGHTDAAYTDLVYAAFDEFPKWTLVDAGRGTCGAQALCRAAAFTGRLDVLTCALGADHRFCAPPDKLTCAYAALGGQLALLQALRAEGCPWDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQHCRINNCYSRTCAYAALGGQLALLQALRAEGCPWDVFTXXXXXXXXXXXXXXXXXXXXXXXXNSITFSCXXXXXXXXXXXXXXXXDHHPDESTCRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCRMVATSSEMRTWIRRQQAAERHAPYYCV
Sbjct:    1 MHYLQIALVCRAWNAEYRWQFPDTDTLTSLRSVTASVPLLRWAISHGCLGSCRDHCEGHTDAAYTDLVYAAFDEFPKWTLVDAGRGTCGAQALCRAAAFTGRLDVLTCALGADHRFCAPPDKLTCAYAALGGQLALLQALRAEGCPWDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQHCRINNCYSRTCAYAALGGQLALLQALRAEGCPWDVFTXXXXXXXXXXXXXXXXXXXXXXXXNSITFSCXXXXXXXXXXXXXXXXDHHPDESTCRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCRMVATSSEMRTWIRRQQAAERHAPYYCV 422
[Close]
BLAST of jgi.p|Trimin1|160005 vs. uniprot
Match: A0A835ZGS4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGS4_9STRA)

HSP 1 Score: 150 bits (379), Expect = 1.900e-38
Identity = 89/151 (58.94%), Postives = 91/151 (60.26%), Query Frame = 1 
Query:    1 MHYLQIALVCRAWNAEYRWQF--PDTDTLTSLRSVTASVPLLRWAISHGCLGSCRDHCEGHTDAAYTDLVYAAFDEFPKWTLVDAGRGTCGAQALCRAAAFTGRLDVLTCALGADHRFCAPPDKLTCAYAALGGQLALLQALRAEGCPWDV 447
            MHYLQIA VCRAWNAEYR QF  P     T LRSVTASVPLL+WAI  GCLG CR               Y  F                   AL  AAA  GRLDVL C LGA H  CAPPD+ TC YAALGGQLALLQALRAEGCPWDV
Sbjct:   59 MHYLQIAPVCRAWNAEYRRQFDNPIHRKRTLLRSVTASVPLLQWAIGQGCLGLCR---------------YRLF-----------------CAALRNAAAQAGRLDVLECTLGAHHHICAPPDERTCGYAALGGQLALLQALRAEGCPWDV 177
[Close]
BLAST of jgi.p|Trimin1|160005 vs. uniprot
Match: A0A835ZDW1_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDW1_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.040e-6
Identity = 26/31 (83.87%), Postives = 29/31 (93.55%), Query Frame = 1 
Query:  355 PPDKLTCAYAALGGQLALLQALRAEGCPWDV 447
            PPD+ TCAYAALGGQ+ALL+ALRA GCPWDV
Sbjct:    1 PPDERTCAYAALGGQMALLRALRARGCPWDV 31
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|160005 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836CNM7_9STRA1.940e-146100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZGS4_9STRA1.900e-3858.94Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZDW1_9STRA2.040e-683.87Ankyrin repeat-containing domain protein n=1 Tax=T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_11contigContig_11:424478..428033 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|160005|e_gw1.11.44.1
Hectar predicted targeting categoryother localisation
TranscriptId160327
TrackFilteredModels1
ProteinId160005
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|160005gene_4738Tribonema minus UTEX_B_3156 geneContig_11 424478..428033 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|160005Trimin1|160005|e_gw1.11.44.1Tribonema minus UTEX_B_3156 polypeptideContig_11 424478..428033 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4738_3exon_4738_3Tribonema minus UTEX_B_3156 exonContig_11 424478..424981 -
exon_4738_2exon_4738_2Tribonema minus UTEX_B_3156 exonContig_11 426522..426549 -
exon_4738_1exon_4738_1Tribonema minus UTEX_B_3156 exonContig_11 427297..428033 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4738CDS_4738Tribonema minus UTEX_B_3156 CDSContig_11 427297..428033 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4738 ID=mRNA_4738|Name=jgi.p|Trimin1|160005|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1269bp|location=Sequence derived from alignment at Contig_11:424478..428033- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCACTACCTCCAGATCGCGCTCGTGTGCCGCGCCTGGAATGCCGAGTA
CCGGTGGCAGTTCCCGGACACGGACACTCTCACATCGCTCCGATCCGTCA
CCGCCTCAGTGCCCCTGCTGCGGTGGGCCATCAGCCACGGCTGCCTCGGC
AGCTGCCGCGACCACTGCGAGGGGCACACGGACGCCGCCTACACGGACCT
CGTCTACGCCGCCTTCGATGAGTTTCCCAAGTGGACCTTGGTGGATGCCG
GGCGCGGCACATGCGGCGCGCAGGCGCTGTGCCGGGCCGCCGCCTTCACC
GGCCGCCTCGACGTGCTCACGTGCGCCCTCGGCGCTGACCACCGCTTCTG
CGCGCCGCCCGACAAGCTGACCTGCGCGTACGCCGCGCTCGGCGGCCAGC
TGGCCCTGCTGCAGGCGCTGCGCGCGGAAGGCTGTCCCTGGGACGTCTCC
GTCTGCCGCTGCGCCGCGCGCGCGGGGCACCTCCACGCGCTGCAGTGGGC
GATCGCGAGCGGCTGTCCCTGGGACGTCGTCACCTCGTGGCACGCCGCCG
CGCACGGTCGCCTCGGCGTGCTGAGATGGTTCGCCGAGAACGGCTGCCCC
CCGAACGAACGCATGTGCCACGCTGCTGTGCTGAGCGGCCACCTGCACGT
GCTGCAGTGGCTGTTCACGCAGGGCTGCGCGTGGCACACGCGCACCGCGG
AGGTGGCGGCGCGCACCGGCCACCTGCAGTGCCTGCAACATTGTCGAATA
AATAATTGTTACTCGCGCACTTGTGCGTACGCCGCGCTCGGCGGCCAGCT
GGCGCTGCTGCAGGCGCTGCGTGCGGAAGGCTGTCCCTGGGACGTCTTCA
CGTGCGGCTTCGCCGCGCGGGCGGGGCACGTCCACGTGCTGCAGTGGGTG
ATCGCGAATTGCTGCCCGTATGACAATAGTATCACCTTTTCCTGCGCAGC
CGCATGTGGTCAGCTTCACGTGCTGTGGTGGCTCGCTGCAAACGACCATC
ACCCCGACGAGTCGACGTGCCGCGCTGCTGCACACAGCGGGCAGCTGCAC
GTGCTGCGGTGGCTGTTCATGCAAGGCTGCGCATGGGACGCGAGCACAGC
GGAGGCAGCGGCGCGCAACGGGCACCTGGAGTGCCTGCGATGGGTGGTGC
TGCACGGGTGTCCGTGGAACGCCAACAGGTGCCGCATGGTAGCCACGAGC
AGCGAAATGCGCACGTGGATCCGCCGGCAGCAAGCCGCCGAGCGCCATGC
TCCGTACTACTGTGTGTAA
back to top

protein sequence of jgi.p|Trimin1|160005

>Trimin1|160005|e_gw1.11.44.1 ID=Trimin1|160005|e_gw1.11.44.1|Name=jgi.p|Trimin1|160005|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=423bp
MHYLQIALVCRAWNAEYRWQFPDTDTLTSLRSVTASVPLLRWAISHGCLG
SCRDHCEGHTDAAYTDLVYAAFDEFPKWTLVDAGRGTCGAQALCRAAAFT
GRLDVLTCALGADHRFCAPPDKLTCAYAALGGQLALLQALRAEGCPWDVS
VCRCAARAGHLHALQWAIASGCPWDVVTSWHAAAHGRLGVLRWFAENGCP
PNERMCHAAVLSGHLHVLQWLFTQGCAWHTRTAEVAARTGHLQCLQHCRI
NNCYSRTCAYAALGGQLALLQALRAEGCPWDVFTCGFAARAGHVHVLQWV
IANCCPYDNSITFSCAAACGQLHVLWWLAANDHHPDESTCRAAAHSGQLH
VLRWLFMQGCAWDASTAEAAARNGHLECLRWVVLHGCPWNANRCRMVATS
SEMRTWIRRQQAAERHAPYYCV*
back to top

mRNA from alignment at Contig_11:424478..428033-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4738 ID=mRNA_4738|Name=jgi.p|Trimin1|160005|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3556bp|location=Sequence derived from alignment at Contig_11:424478..428033- (Tribonema minus UTEX_B_3156 )
ATGCACTACCTCCAGATCGCGCTCGTGTGCCGCGCCTGGAATGCCGAGTA
CCGGTGGCAGTTCCCGGACACGGACACTCTCACATCGCTCCGATCCGTCA
CCGCCTCAGTGCCCCTGCTGCGGTGGGCCATCAGCCACGGCTGCCTCGGC
AGCTGCCGCGACCACTGCGAGGGGCACACGGACGCCGCCTACACGGACCT
CGTCTACGCCGCCTTCGATGAGTTTCCCAAGTGGACCTTGGTGGATGCCG
GGCGCGGCACATGCGGCGCGCAGGCGCTGTGCCGGGCCGCCGCCTTCACC
GGCCGCCTCGACGTGCTCACGTGCGCCCTCGGCGCTGACCACCGCTTCTG
CGCGCCGCCCGACAAGCTGACCTGCGCGTACGCCGCGCTCGGCGGCCAGC
TGGCCCTGCTGCAGGCGCTGCGCGCGGAAGGCTGTCCCTGGGACGTCTCC
GTCTGCCGCTGCGCCGCGCGCGCGGGGCACCTCCACGCGCTGCAGTGGGC
GATCGCGAGCGGCTGTCCCTGGGACGTCGTCACCTCGTGGCACGCCGCCG
CGCACGGTCGCCTCGGCGTGCTGAGATGGTTCGCCGAGAACGGCTGCCCC
CCGAACGAACGCATGTGCCACGCTGCTGTGCTGAGCGGCCACCTGCACGT
GCTGCAGTGGCTGTTCACGCAGGGCTGCGCGTGGCACACGCGCACCGCGG
AGGTGGCGGCGCGCACCGGCCACCTGCAGTGCCTGCAGTGAGCGGTGCGG
CACGGGTGTCCTTGGGACGCCGACAAGTGCCACGAGGTCGCCACGAGCTG
CGAGGTGCGCGCGTGGGTCCGCAAGGAGCAAGCCGATGCGTTCCGTCGTC
AGCACCCAGCCTCAGACTGATGTGCGCATTGGTGTCTGGTTCCGCGTGTA
CATTTGAACTACAGTAGTAGCAACCTGAGGTGGCTTTAACTTGCACAGTT
TCTTCCTTAAGGAACAGTTGTGCAAGTTAGCATTCTGTGCGTTGTCGCAT
TGTGGGTTGCCTGCCCCGCTGCAGGCTTGCTTATGCTGTGCTAGCGACAT
GTGTACTTTTTATTAATTCTCGACATGCGTACTACTTGTTGAAGTTACGC
TTTGCCTTTATCAGGCATGCCCTGCCGTTCTGCTACTTCAACTTGACTGC
ACATATGCATCCTAATAAATGCATAGTATACTAAGGATAAGATCAGGGCC
ACTCCGGGGGCACGAGCATTGGTGTCACTGCTGTTCTGCCGTTGCCTGTC
ATCTCTGCAACCCCCAGCTGGTACGTAAACAAGCAGTGTGAGTGATTTGT
TGGCACGTCAGTGTGCACAGGGCAGACATTGGCTGGTTCAACCAGTTGAC
TTGGCATACAGTGAAGCCGTTTCAATCGCAGAGATCTGCGGCATCCATTG
TCGATGCATTGGCGAATTCATTGTGGGGAGAGTGGGTCAGTGCGCCGCCG
GGTGTCGATGTTTGCACAGGACATTTGTGACCAGACATTGTCGAATAAAT
AATTGTTACTCGGTGTACTCGAATAATTACTCAGTAATTACTGTACTCGG
TAGCTTCTGAAGGCACCAAGTATTTATTCTTACTGTACTTGGTGATGTTC
AGAGATTCCCATGGCATATACTTCTATTTACTTGGTATTTTACTTGGCCT
TCGAAGTAAAATCAGAGTAAAATGCCCCCGTCTTCCCCCGGTGTTCTCCC
GGTTGTTTCTGCCAGCAGGAACGCCGTAATCGATGTCGGCCAGACATCAC
ACGTGGAGAGGCACATTCAGCACGATGGACGCAGCCGGTAGCGTTGGCCA
CTTGAAGTGCAGCACACTTTGAGCATGAGTACCTATTCTCATTTTTATTA
GATATTTACTCTGTGGCAGTAGCAGAAAAACTCGAGTAAACACTTGGAAT
ATTTATTCGTACTTACTCGGTGCCTGAACTTGAACTTATTGTATTCGAAA
TGGACCCTGAATTGGACCAAGTAATTACTCTACTCGAGCTCAATGTACTC
GGTGCAAATTCCTGAGCAAAATATTATTTCAGGAGGGCAAAAAGGGCGTA
TTCGACAATGTCTGCTGACCCCCGATTGGACAACTGCAACCCAATCGGAA
CCGGCGCCTGCTGCCTGCGAGCTCAGACAAAACCAGACACAGTGGCTTTG
CAGCAGCGCGCGATGTCAGCTCAGGCGACGGCAGCATCAGGCAGAGTGCC
GTGGGTGCTTGGCGGCCTTGCGACGGCTGGTGTCATCGCAAGCGTGAGCA
CAAAGGCAGTGCGATGGTATCGACACCGACGAGAGATGGCACGTCGTGGT
AAGCTACTTTACTACGCCGCGAGCTTGACTGGAAGCCCTGTCAAACCTTT
GCAATGCAAAGCACGTGTCCAATCACAGCATGGTGCGCCTATGACTTTGT
CACGCTTCCGTGCCCTGCTCAGAAAAACCTTTTGTCGAGTGACACGCTCT
TGCATTTCGACAGCCGCTGTAGGATTGCAGTCTAGGGTCAAGTCACAACG
TTGTTGACAACCGCAGAGGCTGTGCGCATTCGCATACCGCATACACATAC
ATCCTTAACGCTTACGCAACTCAGCTCAACCCGCATTTGCGTTCAACTTG
CACTTGCAGACGCGGAGCGCCGCTCCAGGACCACCGGAGCACTAGCCAAA
CGGTGGACAGACATCCTGAGCATGGTGGGCCCCATGCACTACCTCCAGGT
CGCACCCGTGTGCCGCGCCTGGAATGCCGAGTATCGGCGGCAGTTCGACA
AGCGCACATCACACCGATCCGTCACCGCCTCGGTGCCCCTGCTGCACTGG
GCCATCAGACAGGGCTGCCTCGGCTTCTGCCGCAACCACCGCTCATTCTG
CGCACGAATGCACACGTGCAAAACAGACCTGGACCCAGTCTACGGCATAT
CCTTTCGCTTCCCCAAGTGGGTCGGGGTGGCCGTCTGGCACGGCACATGC
GGCGTGCAAGCGCTGCGCCACGCCGCCGCATTCACCGGCCGTCTCGACGT
GCTCGAGCGCGTGCTCGGCACCTACCACCCCGCCTGCGCACCGCCCGACG
AGCGCACTTGTGCGTACGCCGCGCTCGGCGGCCAGCTGGCGCTGCTGCAG
GCGCTGCGTGCGGAAGGCTGTCCCTGGGACGTCTTCACGTGCGGCTTCGC
CGCGCGGGCGGGGCACGTCCACGTGCTGCAGTGGGTGATCGCGAATTGCT
GCCCGTATGACAATAGTATCACCTTTTCCTGCGCAGCCGCATGTGGTCAG
CTTCACGTGCTGTGGTGGCTCGCTGCAAACGACCATCACCCCGACGAGTC
GACGTGCCGCGCTGCTGCACACAGCGGGCAGCTGCACGTGCTGCGGTGGC
TGTTCATGCAAGGCTGCGCATGGGACGCGAGCACAGCGGAGGCAGCGGCG
CGCAACGGGCACCTGGAGTGCCTGCGATGGGTGGTGCTGCACGGGTGTCC
GTGGAACGCCAACAGGTGCCGCATGGTAGCCACGAGCAGCGAAATGCGCA
CGTGGATCCGCCGGCAGCAAGCCGCCGAGCGCCATGCTCCGTACTACTGT
GTGTAA
back to top

Coding sequence (CDS) from alignment at Contig_11:424478..428033-

>mRNA_4738 ID=mRNA_4738|Name=jgi.p|Trimin1|160005|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1269bp|location=Sequence derived from alignment at Contig_11:424478..428033- (Tribonema minus UTEX_B_3156 )
ATGCACTACCTCCAGATCGCGCTCGTGTGCCGCGCCTGGAATGCCGAGTA
CCGGTGGCAGTTCCCGGACACGGACACTCTCACATCGCTCCGATCCGTCA
CCGCCTCAGTGCCCCTGCTGCGGTGGGCCATCAGCCACGGCTGCCTCGGC
AGCTGCCGCGACCACTGCGAGGGGCACACGGACGCCGCCTACACGGACCT
CGTCTACGCCGCCTTCGATGAGTTTCCCAAGTGGACCTTGGTGGATGCCG
GGCGCGGCACATGCGGCGCGCAGGCGCTGTGCCGGGCCGCCGCCTTCACC
GGCCGCCTCGACGTGCTCACGTGCGCCCTCGGCGCTGACCACCGCTTCTG
CGCGCCGCCCGACAAGCTGACCTGCGCGTACGCCGCGCTCGGCGGCCAGC
TGGCCCTGCTGCAGGCGCTGCGCGCGGAAGGCTGTCCCTGGGACGTCTCC
GTCTGCCGCTGCGCCGCGCGCGCGGGGCACCTCCACGCGCTGCAGTGGGC
GATCGCGAGCGGCTGTCCCTGGGACGTCGTCACCTCGTGGCACGCCGCCG
CGCACGGTCGCCTCGGCGTGCTGAGATGGTTCGCCGAGAACGGCTGCCCC
CCGAACGAACGCATGTGCCACGCTGCTGTGCTGAGCGGCCACCTGCACGT
GCTGCAGTGGCTGTTCACGCAGGGCTGCGCGTGGCACACGCGCACCGCGG
AGGTGGCGGCGCGCACCGGCCACCTGCAGTGCCTGCAACATTGTCGAATA
AATAATTGTTACTCGCGCACTTGTGCGTACGCCGCGCTCGGCGGCCAGCT
GGCGCTGCTGCAGGCGCTGCGTGCGGAAGGCTGTCCCTGGGACGTCTTCA
CGTGCGGCTTCGCCGCGCGGGCGGGGCACGTCCACGTGCTGCAGTGGGTG
ATCGCGAATTGCTGCCCGTATGACAATAGTATCACCTTTTCCTGCGCAGC
CGCATGTGGTCAGCTTCACGTGCTGTGGTGGCTCGCTGCAAACGACCATC
ACCCCGACGAGTCGACGTGCCGCGCTGCTGCACACAGCGGGCAGCTGCAC
GTGCTGCGGTGGCTGTTCATGCAAGGCTGCGCATGGGACGCGAGCACAGC
GGAGGCAGCGGCGCGCAACGGGCACCTGGAGTGCCTGCGATGGGTGGTGC
TGCACGGGTGTCCGTGGAACGCCAACAGGTGCCGCATGGTAGCCACGAGC
AGCGAAATGCGCACGTGGATCCGCCGGCAGCAAGCCGCCGAGCGCCATGC
TCCGTACTACTGTGTGTAA
back to top