mRNA_4700 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|159936
Unique NamemRNA_4700
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|159936 vs. uniprot
Match: A0A835ZF97_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF97_9STRA)

HSP 1 Score: 436 bits (1120), Expect = 7.180e-151
Identity = 329/329 (100.00%), Postives = 329/329 (100.00%), Query Frame = 1 
Query:    1 MVTLVPLAQWAVANGCCVRRLLKHAAACGSLEVLQHWANASPWSDRVGTKLCAAAVEGGHFHVLQWLHTINCPWDASTPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTLHDTGESSDIAFTKAXXXXXXXXXXXXXXXXXXVNLPRSISTAAEHGHLSVILWLRSISRDWSSDAEYACDAAARGDQLATLQWLHQNGCPLDPGLXXXXXXXXXXXXXXXXXXXXXXWHNNLIIYASKPPHHCADLSRKRLAAVEWALANGCPCNAASRSAYLRLQREVRQSLRAASARNCVEA 987
            MVTLVPLAQWAVANGCCVRRLLKHAAACGSLEVLQHWANASPWSDRVGTKLCAAAVEGGHFHVLQWLHTINCPWDASTPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTLHDTGESSDIAFTKAXXXXXXXXXXXXXXXXXXVNLPRSISTAAEHGHLSVILWLRSISRDWSSDAEYACDAAARGDQLATLQWLHQNGCPLDPGLXXXXXXXXXXXXXXXXXXXXXXWHNNLIIYASKPPHHCADLSRKRLAAVEWALANGCPCNAASRSAYLRLQREVRQSLRAASARNCVEA
Sbjct:    1 MVTLVPLAQWAVANGCCVRRLLKHAAACGSLEVLQHWANASPWSDRVGTKLCAAAVEGGHFHVLQWLHTINCPWDASTPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTLHDTGESSDIAFTKAXXXXXXXXXXXXXXXXXXVNLPRSISTAAEHGHLSVILWLRSISRDWSSDAEYACDAAARGDQLATLQWLHQNGCPLDPGLXXXXXXXXXXXXXXXXXXXXXXWHNNLIIYASKPPHHCADLSRKRLAAVEWALANGCPCNAASRSAYLRLQREVRQSLRAASARNCVEA 329
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BLAST of jgi.p|Trimin1|159936 vs. uniprot
Match: A0A835YN60_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN60_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 4.530e-8
Identity = 37/76 (48.68%), Postives = 45/76 (59.21%), Query Frame = 1 
Query:   13 VPLAQWAVANGCC-VRRLLKHAAACGSLEVLQHWA-NASPWSDRVGTKLCAAAVEGGHFHVLQWLHTINCPWDAST 234
            VPLAQWA+ANGC    +LL+ AA  G+L+VLQH+  N   W       +CAAA  GGH  VL+WL    C W   T
Sbjct:  337 VPLAQWALANGCPKTEKLLELAARRGALDVLQHFVTNGCTWHSEPWL-VCAAAAGGGHLEVLRWLRGQGCEWGMET 411
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BLAST of jgi.p|Trimin1|159936 vs. uniprot
Match: A0A835ZBQ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBQ7_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 2.060e-7
Identity = 36/88 (40.91%), Postives = 44/88 (50.00%), Query Frame = 1 
Query:    1 MVTLVPLAQWAVANGCCVRRLLKHAAACGSLEVLQHWANASPWSD-------RVGTKLCAAAVEGGHFHVLQWLHTINCPWDASTPAA 243
            MV+  PL QWAVANGC    L++HAA CG L V+Q+        D       +  T +C AA   G   +LQW       WDA T AA
Sbjct:    1 MVSSRPLIQWAVANGCKRTSLVRHAATCGILAVVQYMLETGTAFDNDLYFKKKTKTLVCKAAASRGDIEMLQWARAHGFVWDARTTAA 88
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|159936 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835ZF97_9STRA7.180e-151100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YN60_9STRA4.530e-848.68Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZBQ7_9STRA2.060e-740.91Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_11contigContig_11:43208..44649 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|159936|e_gw1.11.180.1
Hectar predicted targeting categoryother localisation
TranscriptId160258
TrackFilteredModels1
ProteinId159936
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|159936gene_4700Tribonema minus UTEX_B_3156 geneContig_11 43208..44649 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4700_1exon_4700_1Tribonema minus UTEX_B_3156 exonContig_11 43208..43644 +
exon_4700_2exon_4700_2Tribonema minus UTEX_B_3156 exonContig_11 44097..44649 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4700CDS_4700Tribonema minus UTEX_B_3156 CDSContig_11 43208..43644 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|159936Trimin1|159936|e_gw1.11.180.1Tribonema minus UTEX_B_3156 polypeptideContig_11 43208..44649 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4700 ID=mRNA_4700|Name=jgi.p|Trimin1|159936|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=990bp|location=Sequence derived from alignment at Contig_11:43208..44649+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTACCTTGGTGCCTCTAGCACAGTGGGCAGTTGCAAACGGGTGCTG
CGTGCGCCGCCTGCTTAAACATGCCGCCGCTTGCGGTAGTCTGGAGGTGC
TGCAGCACTGGGCGAACGCCTCTCCTTGGAGCGATCGTGTGGGGACCAAG
CTCTGTGCCGCAGCCGTAGAGGGCGGTCACTTTCACGTCCTGCAATGGCT
TCACACCATCAACTGTCCCTGGGATGCATCTACTCCCGCAGCTGCAGCAA
GGCGGGGGGACTTAACGCTGGTGCAATGGCTGCACGCCGAGCGTTGCCCC
TGGGACAAGAGCGCTTGCTGCGAGGCAGCAGAAGGGGGCCATCTTGAGGT
TCTCAAGTACCTTTTCGAGCAAGGTTGTCCGTGGAACGGAAAAGTATGCT
GCCGCGCAGCCAGATCCGGCCATCTCAGCACGCTGCACGACACTGGCGAG
AGTAGCGACATTGCCTTCACAAAAGCTGCAATAGGAGGTCACCTGGAGTT
GATGCAATGGGCTTACATTTTTGACTGCCCTGTCAATTTGCCACGTAGCA
TCAGCACAGCAGCCGAGCACGGCCATCTCAGCGTGATTCTGTGGCTCCGC
AGTATCAGTCGCGATTGGAGCTCCGACGCAGAGTATGCGTGTGACGCCGC
AGCGCGAGGTGACCAGTTGGCAACACTTCAGTGGCTCCACCAAAACGGCT
GCCCCTTGGATCCTGGTCTATGTTCGGTTGCGGCCAGATGCGGCAACGTA
GAGATGCTGGAGTGGGCCCGCAGCATGGGCTGCCCTTGGCACAATAATTT
GATCATTTATGCGAGCAAACCCCCTCATCACTGCGCTGACTTGAGCCGCA
AGAGGCTTGCGGCAGTTGAGTGGGCGCTCGCCAACGGCTGCCCTTGCAAT
GCCGCCTCTAGGTCTGCGTACTTGCGGCTGCAACGTGAAGTAAGACAGTC
ACTTAGGGCGGCCAGCGCTCGCAATTGTGTTGAGGCTTGA
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protein sequence of jgi.p|Trimin1|159936

>Trimin1|159936|e_gw1.11.180.1 ID=Trimin1|159936|e_gw1.11.180.1|Name=jgi.p|Trimin1|159936|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=330bp
MVTLVPLAQWAVANGCCVRRLLKHAAACGSLEVLQHWANASPWSDRVGTK
LCAAAVEGGHFHVLQWLHTINCPWDASTPAAAARRGDLTLVQWLHAERCP
WDKSACCEAAEGGHLEVLKYLFEQGCPWNGKVCCRAARSGHLSTLHDTGE
SSDIAFTKAAIGGHLELMQWAYIFDCPVNLPRSISTAAEHGHLSVILWLR
SISRDWSSDAEYACDAAARGDQLATLQWLHQNGCPLDPGLCSVAARCGNV
EMLEWARSMGCPWHNNLIIYASKPPHHCADLSRKRLAAVEWALANGCPCN
AASRSAYLRLQREVRQSLRAASARNCVEA*
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mRNA from alignment at Contig_11:43208..44649+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4700 ID=mRNA_4700|Name=jgi.p|Trimin1|159936|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1442bp|location=Sequence derived from alignment at Contig_11:43208..44649+ (Tribonema minus UTEX_B_3156 )
ATGGTTACCTTGGTGCCTCTAGCACAGTGGGCAGTTGCAAACGGGTGCTG
CGTGCGCCGCCTGCTTAAACATGCCGCCGCTTGCGGTAGTCTGGAGGTGC
TGCAGCACTGGGCGAACGCCTCTCCTTGGAGCGATCGTGTGGGGACCAAG
CTCTGTGCCGCAGCCGTAGAGGGCGGTCACTTTCACGTCCTGCAATGGCT
TCACACCATCAACTGTCCCTGGGATGCATCTACTCCCGCAGCTGCAGCAA
GGCGGGGGGACTTAACGCTGGTGCAATGGCTGCACGCCGAGCGTTGCCCC
TGGGACAAGAGCGCTTGCTGCGAGGCAGCAGAAGGGGGCCATCTTGAGGT
TCTCAAGTACCTTTTCGAGCAAGGTTGTCCGTGGAACGGAAAAGTATGCT
GCCGCGCAGCCAGATCCGGCCATCTCAGCACGCTGCAGTTTGCACGTGCA
CTGCGAAGGAGAGAATTTTTTGGAGCAATCCCCGGATACTAAAAGGCACC
ACAGGACATCAATGCAATGATCGAGTTGAAGATCGCACAATCATTTGACT
GAACAGCAACAGTTCGCTTCAGGATGCTGTACGGACGGTGATGCAACCGT
CAAACTTCAAATTGAAGATGATGGTCAATACTGAGCGTGACAGTTGATGT
TAAACTTCAACTTGAAGTTGTACTTCAATTACAGTAGCGTCTCGAGTCAA
GTTTGTCCAATTTGAAGTTTGAAGATTGCACCATCATCCGCAGAGCGAGC
TGAAGCGAACTGTTGATGTTCGGTCAAATGGTTGTGCAATCTTCAACTTG
ATCATTGCATTAATGTCCTGTGGTGCCTTTTAGTATCCAGGGATTGCCCC
AAATAATTCTCTCCTCACACGGGTGTCCTGGAATTTTAGCGACACTGGCG
AGAGTAGCGACATTGCCTTCACAAAAGCTGCAATAGGAGGTCACCTGGAG
TTGATGCAATGGGCTTACATTTTTGACTGCCCTGTCAATTTGCCACGTAG
CATCAGCACAGCAGCCGAGCACGGCCATCTCAGCGTGATTCTGTGGCTCC
GCAGTATCAGTCGCGATTGGAGCTCCGACGCAGAGTATGCGTGTGACGCC
GCAGCGCGAGGTGACCAGTTGGCAACACTTCAGTGGCTCCACCAAAACGG
CTGCCCCTTGGATCCTGGTCTATGTTCGGTTGCGGCCAGATGCGGCAACG
TAGAGATGCTGGAGTGGGCCCGCAGCATGGGCTGCCCTTGGCACAATAAT
TTGATCATTTATGCGAGCAAACCCCCTCATCACTGCGCTGACTTGAGCCG
CAAGAGGCTTGCGGCAGTTGAGTGGGCGCTCGCCAACGGCTGCCCTTGCA
ATGCCGCCTCTAGGTCTGCGTACTTGCGGCTGCAACGTGAAGTAAGACAG
TCACTTAGGGCGGCCAGCGCTCGCAATTGTGTTGAGGCTTGA
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Coding sequence (CDS) from alignment at Contig_11:43208..44649+

>mRNA_4700 ID=mRNA_4700|Name=jgi.p|Trimin1|159936|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=990bp|location=Sequence derived from alignment at Contig_11:43208..44649+ (Tribonema minus UTEX_B_3156 )
ATGGTTACCTTGGTGCCTCTAGCACAGTGGGCAGTTGCAAACGGGTGCTG
CGTGCGCCGCCTGCTTAAACATGCCGCCGCTTGCGGTAGTCTGGAGGTGC
TGCAGCACTGGGCGAACGCCTCTCCTTGGAGCGATCGTGTGGGGACCAAG
CTCTGTGCCGCAGCCGTAGAGGGCGGTCACTTTCACGTCCTGCAATGGCT
TCACACCATCAACTGTCCCTGGGATGCATCTACTCCCGCAGCTGCAGCAA
GGCGGGGGGACTTAACGCTGGTGCAATGGCTGCACGCCGAGCGTTGCCCC
TGGGACAAGAGCGCTTGCTGCGAGGCAGCAGAAGGGGGCCATCTTGAGGT
TCTCAAGTACCTTTTCGAGCAAGGTTGTCCGTGGAACGGAAAAGTATGCT
GCCGCGCAGCCAGATCCGGCCATCTCAGCACGCTGCACGACACTGGCGAG
AGTAGCGACATTGCCTTCACAAAAGCTGCAATAGGAGGTCACCTGGAGTT
GATGCAATGGGCTTACATTTTTGACTGCCCTGTCAATTTGCCACGTAGCA
TCAGCACAGCAGCCGAGCACGGCCATCTCAGCGTGATTCTGTGGCTCCGC
AGTATCAGTCGCGATTGGAGCTCCGACGCAGAGTATGCGTGTGACGCCGC
AGCGCGAGGTGACCAGTTGGCAACACTTCAGTGGCTCCACCAAAACGGCT
GCCCCTTGGATCCTGGTCTATGTTCGGTTGCGGCCAGATGCGGCAACGTA
GAGATGCTGGAGTGGGCCCGCAGCATGGGCTGCCCTTGGCACAATAATTT
GATCATTTATGCGAGCAAACCCCCTCATCACTGCGCTGACTTGAGCCGCA
AGAGGCTTGCGGCAGTTGAGTGGGCGCTCGCCAACGGCTGCCCTTGCAAT
GCCGCCTCTAGGTCTGCGTACTTGCGGCTGCAACGTGAAGTAAGACAGTC
ACTTAGGGCGGCCAGCGCTCGCAATTGTGTTGAGGCTTGA
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