mRNA_4665 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|152987
Unique NamemRNA_4665
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|152987 vs. uniprot
Match: A0A836CC64_9STRA (Dus domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC64_9STRA)

HSP 1 Score: 463 bits (1192), Expect = 9.820e-165
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 1
Query:    1 FKGTECLAPMVRAGSLPLRLLALQYGADTVWGEELVDRRVSAAVRHVNHHLGTIDYVNNGKSVAFRTCDAERGRVVFQLGTSDAARARAAAEAVARDVAAVDVNMGCPKRFSIQGGMGAALLTNPDVACDIIATLRRALPVPVTAKIRLLDTAAATVELARRLEAAGAAALTVHARLRSTDPKEPALWDMLRPVVDSVGIPVIANGDIYSRADMATVRAQTGCASVMLARPALLNCSVFDK 723
            FKGTECLAPMVRAGSLPLRLLALQYGADTVWGEELVDRRVSAAVRHVNHHLGTIDYVNNGKSVAFRTCDAERGRVVFQLGTSDAARARAAAEAVARDVAAVDVNMGCPKRFSIQGGMGAALLTNPDVACDIIATLRRALPVPVTAKIRLLDTAAATVELARRLEAAGAAALTVHARLRSTDPKEPALWDMLRPVVDSVGIPVIANGDIYSRADMATVRAQTGCASVMLARPALLNCSVFDK
Sbjct:    1 FKGTECLAPMVRAGSLPLRLLALQYGADTVWGEELVDRRVSAAVRHVNHHLGTIDYVNNGKSVAFRTCDAERGRVVFQLGTSDAARARAAAEAVARDVAAVDVNMGCPKRFSIQGGMGAALLTNPDVACDIIATLRRALPVPVTAKIRLLDTAAATVELARRLEAAGAAALTVHARLRSTDPKEPALWDMLRPVVDSVGIPVIANGDIYSRADMATVRAQTGCASVMLARPALLNCSVFDK 241          
BLAST of jgi.p|Trimin1|152987 vs. uniprot
Match: D8LPM6_ECTSI (Dus domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPM6_ECTSI)

HSP 1 Score: 290 bits (742), Expect = 6.570e-92
Identity = 156/244 (63.93%), Postives = 186/244 (76.23%), Query Frame = 1
Query:    1 FKGTECLAPMVRAGSLPLRLLALQYGADTVWGEELVDRRVSAAVRHVNHHLGTIDYVNN----GKSVAFRTCDA-ERGRVVFQLGTSDAARARAAAEAVARDVAAVDVNMGCPKRFSIQGGMGAALLTNPDVACDIIATLRRALPVPVTAKIRLLDTAAATVELARRLEAAGAAALTVHARLRSTDPKEPALWDMLRPVVDSVGIPVIANGDIYSRADMATVRAQTGCASVMLARPALLNCSVF 717
            ++G   LAPMVRAG+LP R LAL+YGADTV+ EE++DRRV  AVR  N  LGT+DYV      G +  F+TC A ERGR+V+Q+GT DA  A  AA+ V RDVAAVD+NMGCPKRFS+QGGMGAALL  P VA DI+ TLRR L VPV+ KIRLL+T   TVE ARR+E AGA AL+VH R     P   A W+ LRPVVD+V IPVIANGD+Y+RADMA ++A +GC+SVMLARPALLNCS+F
Sbjct:   11 YRGKVILAPMVRAGTLPFRALALRYGADTVFTEEVIDRRVVNAVRTENPVLGTVDYVEKRGKKGIATPFQTCPALERGRLVYQIGTGDATNALRAAQHVERDVAAVDINMGCPKRFSLQGGMGAALLKQPQVAADIVGTLRRNLSVPVSVKIRLLETPGETVEFARRMEKAGACALSVHVRKVGDTPASKARWEELRPVVDAVNIPVIANGDVYTRADMAGIKALSGCSSVMLARPALLNCSIF 254          
BLAST of jgi.p|Trimin1|152987 vs. uniprot
Match: A0A6H5KTF8_9PHAE (Dus domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTF8_9PHAE)

HSP 1 Score: 286 bits (732), Expect = 1.020e-90
Identity = 154/244 (63.11%), Postives = 185/244 (75.82%), Query Frame = 1
Query:    1 FKGTECLAPMVRAGSLPLRLLALQYGADTVWGEELVDRRVSAAVRHVNHHLGTIDYVNN----GKSVAFRTCDA-ERGRVVFQLGTSDAARARAAAEAVARDVAAVDVNMGCPKRFSIQGGMGAALLTNPDVACDIIATLRRALPVPVTAKIRLLDTAAATVELARRLEAAGAAALTVHARLRSTDPKEPALWDMLRPVVDSVGIPVIANGDIYSRADMATVRAQTGCASVMLARPALLNCSVF 717
            ++G   LAPMVRAG+LP R LAL+YGADTV+ EE++DRRV  AVR  N  LGT+DYV      G +  F+TC A ERGR+V+Q+GT DA  A  AA+ V RDVAAVD+NMGCPK+FS+QGGMGAALL  P VA DI+  LRR L VPV+ KIRLL+T   TVE ARR+E AGA AL+VH R     P   A W+ LRPVVD+V IPVIANGD+Y+RADMA ++A +GC+SVMLARPALLNCS+F
Sbjct:   11 YRGKVILAPMVRAGTLPFRALALRYGADTVFTEEVIDRRVVNAVRTENPVLGTVDYVEKRGKKGIATPFQTCPALERGRLVYQIGTGDATNALRAAQHVERDVAAVDINMGCPKKFSLQGGMGAALLKQPQVAADIVGILRRNLSVPVSVKIRLLETPGETVEFARRMEKAGACALSVHVRKVGDTPASKARWEELRPVVDAVDIPVIANGDVYTRADMAGIKALSGCSSVMLARPALLNCSIF 254          
BLAST of jgi.p|Trimin1|152987 vs. uniprot
Match: A0A6G0WLF6_9STRA (C2H2-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WLF6_9STRA)

HSP 1 Score: 266 bits (681), Expect = 7.520e-85
Identity = 133/240 (55.42%), Postives = 183/240 (76.25%), Query Frame = 1
Query:    1 FKGTECLAPMVRAGSLPLRLLALQYGADTVWGEELVDRRVSAAVRHVNHHLGTIDYVNNGKSVAFRTCDAERGRVVFQLGTSDAARARAAAEAVARDVAAVDVNMGCPKRFSIQGGMGAALLTNPDVACDIIATLRRALPVPVTAKIRLLDTAAATVELARRLEAAGAAALTVHARLRSTDPKEPALWDMLRPVVDSVGIPVIANGDIYSRADMATVRAQTGCASVMLARPALLNCSVFD 720
            ++   CLAPMVRAG+LPLRLL+L+YGAD V+GEE++D++++A  R  N  L TID+V+  +SV FRTC+ E+ +VVFQ+GT+ A  A  AAE +A+DVAAVD+NMGCPK FS+QGGMG AL++ P+VA DII TL+R L +PV+ KIR+ DT  AT++ A+ +E AGAAA+ VHAR     P + A WD L+P+  ++ +PV+ANGDI+++ D+A VRA+TGC SV++AR AL N S F 
Sbjct:    6 YENAVCLAPMVRAGTLPLRLLSLRYGADLVYGEEIIDKKIAATTRIENKALNTIDFVSR-ESVVFRTCEEEKAKVVFQIGTASAVHALQAAETIAKDVAAVDINMGCPKHFSVQGGMGVALMSKPEVASDIIKTLKRNLNIPVSCKIRIKDTPEATIDFAKGMELAGAAAIGVHARQAHERPVDDAHWDALKPLPSALSVPVLANGDIWTQEDIARVRAETGCQSVLIARGALSNASCFS 244          
BLAST of jgi.p|Trimin1|152987 vs. uniprot
Match: A0A024U0A2_9STRA (tRNA-dihydrouridine synthase n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U0A2_9STRA)

HSP 1 Score: 259 bits (662), Expect = 3.890e-83
Identity = 132/240 (55.00%), Postives = 177/240 (73.75%), Query Frame = 1
Query:    1 FKGTECLAPMVRAGSLPLRLLALQYGADTVWGEELVDRRVSAAVRHVNHHLGTIDYVNN-GKSVAFRTCDAERGRVVFQLGTSDAARARAAAEAVARDVAAVDVNMGCPKRFSIQGGMGAALLTNPDVACDIIATLRRALPVPVTAKIRLLDTAAATVELARRLEAAGAAALTVHARLRSTDPKEPALWDMLRPVVDSVGIPVIANGDIYSRADMATVRAQTGCASVMLARPALLNCSVF 717
            ++   CLAPMVRAG+LPLRLL+L+YGAD V+GEE++D++++A  R VN  L T+DYV+  G SV FRTC  E  +VVFQ+GT+ A  A  AAE VARDVAAVD+NMGCPK FS+QGGMG AL+  PDVA DI+ TL+R L +PV+ KIR+  T   T++ A+ +E +GAAA+ +HAR     P + A WD L  +  ++ +PV+ANGDI+++AD+A VR +TGC SV++AR AL N S F
Sbjct:    6 YENAVCLAPMVRAGTLPLRLLSLRYGADLVYGEEIIDKKIAATTRVVNDVLNTVDYVSRTGDSVVFRTCAEESSKVVFQIGTASAVHALQAAETVARDVAAVDINMGCPKHFSVQGGMGIALMGKPDVAADIVKTLQRNLNIPVSCKIRIKSTPQETIDFAKAMELSGAAAIGIHAREAHERPMDDAHWDALPLIPSALSVPVLANGDIWTQADVARVRQETGCQSVLIARGALSNASCF 245          
BLAST of jgi.p|Trimin1|152987 vs. uniprot
Match: W1NDK3_AMBTC (tRNA-dihydrouridine synthase n=3 Tax=Amborella trichopoda TaxID=13333 RepID=W1NDK3_AMBTC)

HSP 1 Score: 259 bits (662), Expect = 6.430e-83
Identity = 132/240 (55.00%), Postives = 174/240 (72.50%), Query Frame = 1
Query:    1 FKGTECLAPMVRAGSLPLRLLALQYGADTVWGEELVDRRVSAAVRHVNHHLGTIDYVNNGK-SVAFRTCDAERGRVVFQLGTSDAARARAAAEAVARDVAAVDVNMGCPKRFSIQGGMGAALLTNPDVACDIIATLRRALPVPVTAKIRLLDTAAATVELARRLEAAGAAALTVHARLRSTDPKEPALWDMLRPVVDSVGIPVIANGDIYSRADMATVRAQTGCASVMLARPALLNCSVF 717
            ++    LAPMVR G+LP R+LA +YGAD  +GEE+VD ++    R +N  LGTID+V  G  SV FRTCDAER RVVFQ+GTSDA RA  AA+ + +DVAA+D+NMGCPK FS+ GGMGAALLT PD+  DI+ TL+R L +PVT KIRLL ++  TVELA+R+E  G +AL VH R  +  P++PA WD +  VV ++ IPVIANGD++   D   +++ TG +SVM+AR A+ N S+F
Sbjct:    5 YRDRHILAPMVRVGTLPFRMLASEYGADITYGEEIVDHKIIKCQRQINESLGTIDFVEKGTGSVVFRTCDAERCRVVFQIGTSDAVRALTAAQLLCKDVAAIDINMGCPKSFSVSGGMGAALLTKPDLINDILTTLKRNLDIPVTCKIRLLPSSHNTVELAKRIEKTGVSALAVHGRKVADRPRDPAQWDKIADVVAALSIPVIANGDVFDYEDFQRIKSVTGASSVMVARGAVWNASIF 244          
BLAST of jgi.p|Trimin1|152987 vs. uniprot
Match: D0P0N4_PHYIT (tRNA-dihydrouridine synthase, putative n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0P0N4_PHYIT)

HSP 1 Score: 264 bits (675), Expect = 6.870e-83
Identity = 138/237 (58.23%), Postives = 178/237 (75.11%), Query Frame = 1
Query:   16 CLAPMVRAGSLPLRLLALQYGADTVWGEELVDRRVSAAVRHVNHHLGTIDYVN-NGKSVAFRTCDAERGRVVFQLGTSDAARARAAAEAVARDVAAVDVNMGCPKRFSIQGGMGAALLTNPDVACDIIATLRRALPVPVTAKIRLLDTAAATVELARRLEAAGAAALTVHARLRSTDPKEPALWDMLRPVVDSVGIPVIANGDIYSRADMATVRAQTGCASVMLARPALLNCSVFDK 723
            CL+PMVR+G+LPLRLL+L+YGAD V+GEE++D+R+ +AVR  N  +  +D+V+ NG SV FRTC  E G+VVFQ+GT+DA  A  AAEAVARDVAAVD+NMGCPK FS+QGGMGAALL  P+VACDI+ TLRR L +PV+ KIRLL     TV+LARRLE AGA A+ VH R     P + A WD L PVV ++ +PV+ANGD++   D+  +R  +G +S ++AR AL N S+F K
Sbjct:   10 CLSPMVRSGTLPLRLLSLRYGADLVYGEEIIDKRIISAVRVPNDVVNAVDFVSRNGDSVVFRTCSEEAGKVVFQIGTADAVLALKAAEAVARDVAAVDINMGCPKHFSVQGGMGAALLRKPEVACDIMKTLRRNLNIPVSCKIRLLPEIQDTVDLARRLEDAGACAVGVHMRQTHERPHDKASWDRLAPVVSALSVPVLANGDVFMHEDINKLRKLSGASSFLIARGALANPSIFRK 246          
BLAST of jgi.p|Trimin1|152987 vs. uniprot
Match: UPI001CC3DC91 (tRNA-dihydrouridine(20) synthase [NAD(P)+]-like n=2 Tax=Proteaceae TaxID=4328 RepID=UPI001CC3DC91)

HSP 1 Score: 259 bits (662), Expect = 7.060e-83
Identity = 134/241 (55.60%), Postives = 173/241 (71.78%), Query Frame = 1
Query:    1 FKGTECLAPMVRAGSLPLRLLALQYGADTVWGEELVDRRVSAAVRHVNHHLGTIDYVNNGK-SVAFRTCDAERGRVVFQLGTSDAARARAAAEAVARDVAAVDVNMGCPKRFSIQGGMGAALLTNPDVACDIIATLRRALPVPVTAKIRLLDTAAATVELARRLEAAGAAALTVHARLRSTDPKEPALWDMLRPVVDSVGIPVIANGDIYSRADMATVRAQTGCASVMLARPALLNCSVFD 720
            ++    LAPMVR G+LPLRLLA QYGAD  +GEE++D +     RH+N  LG+ID+V  G  SV FRTC  ER RVVFQLGTSDA RA +AA+ V +DVAAVD+NMGCP+ FSI GGMGAALL+ P++  DI+ TL+R L VPVT KIRLL +   TVELAR++E  G +AL +H R  S  P++PA W+ +  VV+++ IPVIANGD++   D   ++  TG +SVM+AR AL N S+F 
Sbjct:    3 YENKMVLAPMVRVGTLPLRLLAAQYGADITYGEEIIDHKFVKCERHINESLGSIDFVEKGTGSVVFRTCHEERNRVVFQLGTSDAVRALSAAQIVCKDVAAVDINMGCPRSFSISGGMGAALLSKPELISDILTTLKRNLDVPVTCKIRLLKSPQDTVELARKIEKTGVSALAIHGRKVSDRPRDPAKWNDIADVVEALSIPVIANGDVFDYEDFQRIKVATGASSVMVARGALWNASIFS 243          
BLAST of jgi.p|Trimin1|152987 vs. uniprot
Match: A0A8K1FAM1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FAM1_PYTOL)

HSP 1 Score: 263 bits (671), Expect = 9.910e-83
Identity = 132/242 (54.55%), Postives = 178/242 (73.55%), Query Frame = 1
Query:    1 FKGTECLAPMVRAGSLPLRLLALQYGADTVWGEELVDRRVSAAVRHVNHHLGTIDYVN-NGKSVAFRTCDAERGRVVFQLGTSDAARARAAAEAVARDVAAVDVNMGCPKRFSIQGGMGAALLTNPDVACDIIATLRRALPVPVTAKIRLLDTAAATVELARRLEAAGAAALTVHARLRSTDPKEPALWDMLRPVVDSVGIPVIANGDIYSRADMATVRAQTGCASVMLARPALLNCSVFDK 723
            ++   CLAPMVRAG+LPLRLL+L+YGAD V+GEE++D+R+ A  R  N  L T+DYV+ NG SV FRTC  E+G+VVFQ+GT+D   A  AAE VA+DVA++D+NMGCPK FSIQGGMG AL+  PDVACDI+ TL R L +PV+AKIR+ + + AT++ A+ LE AGA A+ VH R     P + A WD L PVV ++ +P++ NGDI++R D+  +R  +G +S ++AR AL N S+F K
Sbjct:    5 YRNAVCLAPMVRAGTLPLRLLSLRYGADLVYGEEIIDKRIIATTRVENAVLNTVDYVSKNGDSVVFRTCAEEKGKVVFQIGTADPILALKAAEHVAQDVASIDINMGCPKHFSIQGGMGVALMKKPDVACDIVKTLSRNLNIPVSAKIRIFEDSQATIDFAKALENAGAVAVGVHGRRADERPVDDAHWDALAPVVSALSVPILVNGDIFNREDLEKIRTISGASSFLIARGALSNASIFRK 246          
BLAST of jgi.p|Trimin1|152987 vs. uniprot
Match: K3XBH1_GLOUD (U1-type domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XBH1_GLOUD)

HSP 1 Score: 263 bits (672), Expect = 1.480e-82
Identity = 138/241 (57.26%), Postives = 179/241 (74.27%), Query Frame = 1
Query:    1 FKGTECLAPMVRAGSLPLRLLALQYGADTVWGEELVDRRVSAAVRHVNHHLGTIDYVNN--GKSVAFRTCDAERGRVVFQLGTSDAARARAAAEAVARDVAAVDVNMGCPKRFSIQGGMGAALLTNPDVACDIIATLRRALPVPVTAKIRLLDTAAATVELARRLEAAGAAALTVHARLRSTDPKEPALWDMLRPVVDSVGIPVIANGDIYSRADMATVRAQTGCASVMLARPALLNCSVF 717
            F+   CLAPMVR+G+LPLRLL+L+YGAD V+GEE+VD+R+ A  R  N  L T+DYV+N  G SV FRTC+ E+ +VVFQ+GT+D   A  AAE VA DVAA+D+NMGCPK FS+QGGMGAALL  PDVACDI+ TLRR L +PV+ KIR+L+ A+AT++LA+ LE AGA A+ +H R     P + A W+ L PVV S+ +PV+ANGDI+ R D+  VR  +G  S ++AR AL N S+F
Sbjct:    5 FENAVCLAPMVRSGTLPLRLLSLRYGADLVYGEEIVDKRLIATTRVANQLLDTVDYVSNNGGGSVVFRTCNEEKEKVVFQIGTADPILALKAAERVATDVAAIDINMGCPKNFSLQGGMGAALLKKPDVACDILKTLRRNLNIPVSCKIRILEDASATIDLAKSLEQAGAVAVGLHCRQVHERPVDDAHWEALGPVVSSLSVPVLANGDIFVREDIEKVRKISGANSFLIARGALQNASIF 245          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|152987 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CC64_9STRA9.820e-165100.00Dus domain-containing protein (Fragment) n=1 Tax=T... [more]
D8LPM6_ECTSI6.570e-9263.93Dus domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KTF8_9PHAE1.020e-9063.11Dus domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6G0WLF6_9STRA7.520e-8555.42C2H2-type domain-containing protein n=1 Tax=Aphano... [more]
A0A024U0A2_9STRA3.890e-8355.00tRNA-dihydrouridine synthase n=1 Tax=Aphanomyces i... [more]
W1NDK3_AMBTC6.430e-8355.00tRNA-dihydrouridine synthase n=3 Tax=Amborella tri... [more]
D0P0N4_PHYIT6.870e-8358.23tRNA-dihydrouridine synthase, putative n=2 Tax=Phy... [more]
UPI001CC3DC917.060e-8355.60tRNA-dihydrouridine(20) synthase [NAD(P)+]-like n=... [more]
A0A8K1FAM1_PYTOL9.910e-8354.55Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3XBH1_GLOUD1.480e-8257.26U1-type domain-containing protein n=1 Tax=Globispo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_46contigContig_46:704696..707369 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|152987|gw1.46.168.1
BRITEko00000,ko01000,ko03016
KEGG koko:K05543
EC1.3.1.91
DescriptiontRNA-dihydrouridine20 synthase activity
COG categoryJ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0042@1|root,KOG2334@2759|Eukaryota
Evalue1.08e-92
Seed ortholog2880.D8LPM6
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAldolase-type TIM barrel
Ec32 orthologEc-06_004820.1
TranscriptId153309
TrackFilteredModels1
ProteinId152987
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152987gene_4665Tribonema minus UTEX_B_3156 geneContig_46 704696..707369 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4665_1exon_4665_1Tribonema minus UTEX_B_3156 exonContig_46 704696..704734 +
exon_4665_2exon_4665_2Tribonema minus UTEX_B_3156 exonContig_46 705381..705683 +
exon_4665_3exon_4665_3Tribonema minus UTEX_B_3156 exonContig_46 706414..706659 +
exon_4665_4exon_4665_4Tribonema minus UTEX_B_3156 exonContig_46 707235..707369 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4665CDS_4665Tribonema minus UTEX_B_3156 CDSContig_46 704696..704734 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152987Trimin1|152987|gw1.46.168.1Tribonema minus UTEX_B_3156 polypeptideContig_46 704696..707369 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4665 ID=mRNA_4665|Name=jgi.p|Trimin1|152987|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=723bp|location=Sequence derived from alignment at Contig_46:704696..707369+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TTCAAGGGCACGGAGTGTCTGGCACCGATGGTCAGAGCGGGCAGCCTGCC
GCTGCGCCTGCTCGCGCTGCAGTACGGCGCCGACACCGTCTGGGGCGAGG
AGCTCGTAGACAGGCGCGTGAGTGCTGCCGTGAGGCACGTCAATCACCAC
CTCGGCACGATCGACTACGTCAACAACGGCAAGTCCGTGGCCTTCCGGAC
GTGCGACGCGGAGCGCGGGCGGGTGGTGTTCCAGCTGGGGACGAGCGACG
CGGCGCGCGCGCGCGCCGCCGCGGAGGCCGTGGCGCGCGACGTCGCCGCC
GTCGACGTCAACATGGGCTGCCCGAAGCGCTTCTCCATACAGGGCGGCAT
GGGCGCGGCGCTGCTCACCAACCCGGACGTCGCGTGCGACATCATCGCGA
CGCTGCGGCGCGCGCTGCCGGTGCCCGTCACCGCCAAGATCCGCCTGCTC
GACACGGCGGCTGCGACGGTGGAGCTCGCGCGGCGGCTGGAGGCGGCGGG
CGCGGCGGCGCTCACGGTGCACGCGCGCCTGCGCTCGACGGACCCGAAGG
AGCCCGCGCTGTGGGACATGCTGCGCCCTGTTGTTGATTCCGTCGGCATC
CCCGTCATCGCCAACGGCGACATCTACAGCCGCGCCGACATGGCGACGGT
GCGCGCGCAGACGGGCTGCGCGTCCGTCATGCTCGCGCGCCCCGCGCTCC
TCAACTGCTCCGTCTTCGACAAG
back to top

protein sequence of jgi.p|Trimin1|152987

>Trimin1|152987|gw1.46.168.1 ID=Trimin1|152987|gw1.46.168.1|Name=jgi.p|Trimin1|152987|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=241bp
FKGTECLAPMVRAGSLPLRLLALQYGADTVWGEELVDRRVSAAVRHVNHH
LGTIDYVNNGKSVAFRTCDAERGRVVFQLGTSDAARARAAAEAVARDVAA
VDVNMGCPKRFSIQGGMGAALLTNPDVACDIIATLRRALPVPVTAKIRLL
DTAAATVELARRLEAAGAAALTVHARLRSTDPKEPALWDMLRPVVDSVGI
PVIANGDIYSRADMATVRAQTGCASVMLARPALLNCSVFDK
back to top

mRNA from alignment at Contig_46:704696..707369+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4665 ID=mRNA_4665|Name=jgi.p|Trimin1|152987|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2674bp|location=Sequence derived from alignment at Contig_46:704696..707369+ (Tribonema minus UTEX_B_3156 )
TTCAAGGGCACGGAGTGTCTGGCACCGATGGTCAGAGCGGTGAGAAGCAA GCAATGCGTAGCTGCCGCGTGCGATCTCTATCTCTGTCCTTTTTAATAAG TTTTAATCAATCAAATACCAATAGATTGCTCTGTTGCACATTGGGCCCTC TTCTTTCAGTGCAGTGCAAACTTCAATATCGGCCAAGAAAGGCTGCGTCA CGGGGCAACAGATCTGCTCATGGCGTAAGCCTGGACACAAAACCCACTGC GTCGCATGGTGCGACCGTCATTCCCCCCTGTGCGTGAGTCTACGCATACG ATTGGTGCTATATATTCTGGGTACAACGTGAATTGAATGTTGAGGTCATA GCACAGTCGCTGCTGCTGGTGCTGGTGCTGCTGCTGCCGCCGCTGCTGCC GCTGCTGTGCCTGCTGCTGTCACAACCGCTACATGCTGCAGGACAGCCTG GCCTGAAACCTGCTGATGCTGCCCCACGGTGATCAAATTGTCCAACAAAA GCAGCTTCCTCAGCTTCTGTAGGCACTCATCGGTGCCCTGCTTGCACTGC ACTAGCTGCACTCAACAGCACAGTATTCGTAGCCCCCATTCAGCACCCAT CAATGCCTATCTCCATTGTGCATTTGCATGTGCTGAATGCGCCGGCTGCT GCCGCCGCCGCCGCCGCCGCCGCGCGCTGCTGCAGGGCAGCCTGCCGCTG CGCCTGCTCGCGCTGCAGTACGGCGCCGACACCGTCTGGGGCGAGGAGCT CGTAGACAGGCGCGTGAGTGCTGCCGTGAGGCACGTCAATCACCACCTCG GCACGATCGACTACGTCAACAACGGCAAGTCCGTGGCCTTCCGGACGTGC GACGCGGAGCGCGGGCGGGTGGTGTTCCAGCTGGGGACGAGCGACGCGGC GCGCGCGCGCGCCGCCGCGGAGGCCGTGGCGCGCGACGTCGCCGCCGTCG ACGTCAACATGGGCTGCCCGAAGCGCTTCTCCATACAGGTAGGTAGGTAC GCAACTGGTGCGGCGCACGCGAGAGATACGCCGTGCAGGCAGTTGTCGGC TGCGCAGGTGCTGCGAGTCGATGATGACTTAGGATGCATGCGTGTCCGCC CGTTGCCGTCGTGAGGTGGTAATGTGTCGTGGTGAAGCGGACACCCACTG CTAATCCACTCAAGTTGCCGTGGACGCAAAGTGTCAGCACCGTCTTGCTG GCTTGCAGCAGGGTCCAGGTTCAAGACCCAGTTCTAACCTCGTGCATTGC ATGCTCTTCAGTCGTTGAAGTCGCTGCCAGCAGACCTGCCACCACGCGCC GCCAACTGTACCCTCGCCACCTATATGAAGCCACTTAGTCCATGCCGTGC GTGCGCCTTGACCGCTGGCTCCGCTGGCAAACGCGCGTGCCAACAGCGCA GGCCGCTTCGGCCACAGGGCCGCGCGATAGCGCCGTGCGCCCCAGCGCCG CCGCTGCTACTCGCAACACGCGCACCATCCTCGCACGCCGCGCCGGCTGT CGCTGCACGCCACATATGTCGCTGCTCGCCCCAACGCTGCTGCTGCTCGT GCAGTGCGCACGCTGCTGTTGAGCGGCTGCGCGAGGGCGTCCCGCGCGGC TGACTTCGGCCACGCGCTCAAAATCTACACTAACAGCACATCGCGACGCA GTGCCTTCAGCGGCGCCGCATCCGCTCACCGCCGCCGCGCGCCGCCGCCG CCGCTGCCGCCGCCGCAGGGCGGCATGGGCGCGGCGCTGCTCACCAACCC GGACGTCGCGTGCGACATCATCGCGACGCTGCGGCGCGCGCTGCCGGTGC CCGTCACCGCCAAGATCCGCCTGCTCGACACGGCGGCTGCGACGGTGGAG CTCGCGCGGCGGCTGGAGGCGGCGGGCGCGGCGGCGCTCACGGTGCACGC GCGCCTGCGCTCGACGGACCCGAAGGAGCCCGCGCTGTGGGACATGCTGC GCCCTGTTGTTGATGTGAGTGAGGGCTGATAGTGTTAGCTAATACTATTG TGCGCTTCGACCCAGGCACGGCAATGCTTATTTTTTACGTCTGCTGCGCT CGGCGGTCATAAATGACCGAGCAGCCCGCGCTGCGGGACATGCTGCGGCC CATCGCCATCGTGAGTGAGGGCTGGGGTACGGGTTCCCATAGCCCCTAAC TTTTATCACTTCACGCGCCGCAGCAGCGCTCTCACTGCGCGCCGCGGGCG CCCAGGAGCTTGCGCTGTGGTTCATGCTGCGTCCTATCGTTGACGTGAGT GAGGGCTGGTTGTGTCGCGTAAACCCTGGTGTCTTCCTCAGCCCGGGCCC GGCCAAGCTCCTTGTGCACCTCTGCAATGATTGACGGACTTCGTGTTGTC GGCCTGGGGGCCCCTCAGCATCCCCATCATTGCCAACGGCGCCATACACC GCCGCTCTCATTGGGTGGGCATGTACCAGAATCTGTTGCTCGGACCACAC CCATACCCATCCCCTTCACCTCCCCCCCCTGCTCGGACCATACCCCATAC CTCCCCCCCTTCCCTCCCCCCCCCGCCCTCCTTGCGCAGTCCGTCGGCAT CCCCGTCATCGCCAACGGCGACATCTACAGCCGCGCCGACATGGCGACGG TGCGCGCGCAGACGGGCTGCGCGTCCGTCATGCTCGCGCGCCCCGCGCTC CTCAACTGCTCCGTCTTCGACAAG
back to top

Coding sequence (CDS) from alignment at Contig_46:704696..707369+

>mRNA_4665 ID=mRNA_4665|Name=jgi.p|Trimin1|152987|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=723bp|location=Sequence derived from alignment at Contig_46:704696..707369+ (Tribonema minus UTEX_B_3156 )
TTCAAGGGCACGGAGTGTCTGGCACCGATGGTCAGAGCGGGCAGCCTGCC
GCTGCGCCTGCTCGCGCTGCAGTACGGCGCCGACACCGTCTGGGGCGAGG
AGCTCGTAGACAGGCGCGTGAGTGCTGCCGTGAGGCACGTCAATCACCAC
CTCGGCACGATCGACTACGTCAACAACGGCAAGTCCGTGGCCTTCCGGAC
GTGCGACGCGGAGCGCGGGCGGGTGGTGTTCCAGCTGGGGACGAGCGACG
CGGCGCGCGCGCGCGCCGCCGCGGAGGCCGTGGCGCGCGACGTCGCCGCC
GTCGACGTCAACATGGGCTGCCCGAAGCGCTTCTCCATACAGGGCGGCAT
GGGCGCGGCGCTGCTCACCAACCCGGACGTCGCGTGCGACATCATCGCGA
CGCTGCGGCGCGCGCTGCCGGTGCCCGTCACCGCCAAGATCCGCCTGCTC
GACACGGCGGCTGCGACGGTGGAGCTCGCGCGGCGGCTGGAGGCGGCGGG
CGCGGCGGCGCTCACGGTGCACGCGCGCCTGCGCTCGACGGACCCGAAGG
AGCCCGCGCTGTGGGACATGCTGCGCCCTGTTGTTGATTCCGTCGGCATC
CCCGTCATCGCCAACGGCGACATCTACAGCCGCGCCGACATGGCGACGGT
GCGCGCGCAGACGGGCTGCGCGTCCGTCATGCTCGCGCGCCCCGCGCTCC
TCAACTGCTCCGTCTTCGACAAG
back to top