mRNA_465 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|55167
Unique NamemRNA_465
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|55167 vs. uniprot
Match: A0A835Z1C5_9STRA (Costars domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1C5_9STRA)

HSP 1 Score: 169 bits (429), Expect = 2.450e-52
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1 
Query:    1 NNEQIEREVEHLRKVITRLGTPQADGKIGVTYGVLFDDEEGQDYFEALMGTLKAAKKRGVVDFQGQMLLKGAHDSVMVTLLKPLT 255
            NNEQIEREVEHLRKVITRLGTPQADGKIGVTYGVLFDDEEGQDYFEALMGTLKAAKKRGVVDFQGQMLLKGAHDSVMVTLLKPLT
Sbjct:    1 NNEQIEREVEHLRKVITRLGTPQADGKIGVTYGVLFDDEEGQDYFEALMGTLKAAKKRGVVDFQGQMLLKGAHDSVMVTLLKPLT 85
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BLAST of jgi.p|Trimin1|55167 vs. uniprot
Match: A0A1D1YQS0_9ARAE (Costars family protein (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1YQS0_9ARAE)

HSP 1 Score: 95.5 bits (236), Expect = 7.660e-23
Identity = 47/79 (59.49%), Postives = 60/79 (75.95%), Query Frame = 1 
Query:   13 IEREVEHLRKVITRLGTPQADGKIGVTYGVLFDDEEGQDYFEALMGTLKAAKKRGVVDFQGQMLLKGAHDSVMVTLLKP 249
            +E EV  LR+ ITRLG PQ DG   VT+GVLF+D+   + FEAL+GTL+AAKKR VV + GQ+LL+G HD+V +TLL P
Sbjct:    9 VEEEVGRLREEITRLGQPQPDGSYKVTFGVLFNDDRCANMFEALVGTLRAAKKRKVVAYDGQLLLQGVHDNVEITLLPP 87
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BLAST of jgi.p|Trimin1|55167 vs. uniprot
Match: A0A7S2SKT3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SKT3_9STRA)

HSP 1 Score: 102 bits (254), Expect = 9.160e-23
Identity = 49/78 (62.82%), Postives = 63/78 (80.77%), Query Frame = 1 
Query:   13 IEREVEHLRKVITRLGTPQADGKIGVTYGVLFDDEEGQDYFEALMGTLKAAKKRGVVDFQGQMLLKGAHDSVMVTLLK 246
            ++ EVE L+K + RLG   A G+  V YGVLFDDE+ + ++EALMGTLKAAKK+GVV F+GQMLLKGAHD V++TLL+
Sbjct:   35 VDEEVEELKKDLVRLGRGNASGQYEVEYGVLFDDEKVEQFYEALMGTLKAAKKKGVVAFEGQMLLKGAHDKVIITLLE 112
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BLAST of jgi.p|Trimin1|55167 vs. uniprot
Match: G0QMS5_ICHMG (Costars domain-containing protein n=1 Tax=Ichthyophthirius multifiliis (strain G5) TaxID=857967 RepID=G0QMS5_ICHMG)

HSP 1 Score: 94.7 bits (234), Expect = 9.830e-23
Identity = 46/78 (58.97%), Postives = 58/78 (74.36%), Query Frame = 1 
Query:    7 EQIEREVEHLRKVITRLGTPQADGKIGVTYGVLFDDEEGQDYFEALMGTLKAAKKRGVVDFQGQMLLKGAHDSVMVTL 240
            ++I  E+E L+K I RLG     GK  V +G LFDDE+ Q Y+EAL+GTLKAAKK+GVVDFQGQ+LLKG HD + + L
Sbjct:    3 DKINDEIEELKKDIQRLGKKNTLGKFSVPFGQLFDDEKAQQYYEALVGTLKAAKKQGVVDFQGQILLKGQHDKIEIIL 80
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BLAST of jgi.p|Trimin1|55167 vs. uniprot
Match: A0A843XMW1_COLES (Costars domain-containing protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843XMW1_COLES)

HSP 1 Score: 94.4 bits (233), Expect = 1.600e-22
Identity = 46/79 (58.23%), Postives = 59/79 (74.68%), Query Frame = 1 
Query:   13 IEREVEHLRKVITRLGTPQADGKIGVTYGVLFDDEEGQDYFEALMGTLKAAKKRGVVDFQGQMLLKGAHDSVMVTLLKP 249
            +E EV  LR+ ITRLG PQ DG   V +GVLF+D+   + FEAL+GTL+AAKKR VV F G++LL+G HD+V +TLL P
Sbjct:    3 VEEEVGRLREEITRLGQPQPDGSFKVKFGVLFNDDRCANIFEALVGTLRAAKKRKVVSFDGELLLQGVHDAVEITLLPP 81
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BLAST of jgi.p|Trimin1|55167 vs. uniprot
Match: A0A5B8MVS8_9CHLO (Costars domain-containing protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MVS8_9CHLO)

HSP 1 Score: 94.0 bits (232), Expect = 2.530e-22
Identity = 44/77 (57.14%), Postives = 60/77 (77.92%), Query Frame = 1 
Query:   13 IEREVEHLRKVITRLGTPQADGKIGVTYGVLFDDEEGQDYFEALMGTLKAAKKRGVVDFQGQMLLKGAHDSVMVTLL 243
            ++REV  +++ I R+GT   DG   V +GVLF+DE+ + Y+EA++GTLKAAKKRG +DF+GQMLLKGAHD V V L+
Sbjct:    8 VDREVLEIQRDIKRIGTQNDDGNFTVKFGVLFEDEKVEQYYEAIVGTLKAAKKRGFIDFKGQMLLKGAHDDVDVILV 84
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BLAST of jgi.p|Trimin1|55167 vs. uniprot
Match: COSA_DICDI (Protein costars n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=COSA_DICDI)

HSP 1 Score: 93.2 bits (230), Expect = 3.850e-22
Identity = 45/78 (57.69%), Postives = 61/78 (78.21%), Query Frame = 1 
Query:   13 IEREVEHLRKVITRLGTPQADGKIGVTYGVLFDDEEGQDYFEALMGTLKAAKKRGVVDFQGQMLLKGAHDSVMVTLLK 246
            ++ EV+ L K I +LGT  ADGK  V YGVLF+D++  ++FEAL+GTLKAAKKRG++ FQG++LL+  HD+V V LLK
Sbjct:    3 VDHEVKELVKFIKKLGTKGADGKYSVKYGVLFNDDDVANFFEALVGTLKAAKKRGIITFQGEILLQRVHDNVDVILLK 80
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BLAST of jgi.p|Trimin1|55167 vs. uniprot
Match: UPI00129D9A92 (costars family protein WS02710_H03 n=1 Tax=Nymphaea colorata TaxID=210225 RepID=UPI00129D9A92)

HSP 1 Score: 92.0 bits (227), Expect = 1.090e-21
Identity = 44/79 (55.70%), Postives = 59/79 (74.68%), Query Frame = 1 
Query:   13 IEREVEHLRKVITRLGTPQADGKIGVTYGVLFDDEEGQDYFEALMGTLKAAKKRGVVDFQGQMLLKGAHDSVMVTLLKP 249
            +E EVE L++ I RLG PQ DG   V +GVLF+D+   + FEAL+GTL+AAKKR VV ++G++LL+G HD V + LLKP
Sbjct:    3 VEEEVERLKEEIKRLGDPQQDGSYKVKFGVLFNDDRCANIFEALVGTLRAAKKRKVVAYEGELLLQGVHDKVEIVLLKP 81
[Close]
BLAST of jgi.p|Trimin1|55167 vs. uniprot
Match: A0A8K1CIZ8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CIZ8_PYTOL)

HSP 1 Score: 90.9 bits (224), Expect = 3.980e-21
Identity = 46/77 (59.74%), Postives = 57/77 (74.03%), Query Frame = 1 
Query:   13 IEREVEHLRKVITRLGTPQADGKIGVTYGVLFDDEEGQDYFEALMGTLKAAKKRGVVDFQGQMLLKGAHDSVMVTLL 243
            +++EVE L   I RLG  + D K GVT+GVLFDDE  QD FEALMGTL+AAK+   +D+QGQ+LLKG HD V + LL
Sbjct:   15 VDKEVEQLVVEIRRLGAQEGD-KFGVTFGVLFDDERCQDVFEALMGTLRAAKRLKKIDYQGQLLLKGTHDKVFIELL 90
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BLAST of jgi.p|Trimin1|55167 vs. uniprot
Match: A0A6G0X2G9_9STRA (Costars domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X2G9_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 4.520e-21
Identity = 47/82 (57.32%), Postives = 63/82 (76.83%), Query Frame = 1 
Query:   10 QIEREVEHLRKVITRLGTP--QADGK--IGVTYGVLFDDEEGQDYFEALMGTLKAAKKRGVVDFQGQMLLKGAHDSVMVTLL 243
            ++++EV+ L   I RLG+    ADG+   GVT+G+LFDDE  QD FEALMGTL+AAK++ V+DFQGQ+LLKG HD+V + LL
Sbjct:    2 EVDKEVDQLVVEIQRLGSEIDGADGQKQFGVTFGILFDDERCQDLFEALMGTLRAAKRKKVIDFQGQLLLKGPHDNVFIRLL 83
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|55167 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z1C5_9STRA2.450e-52100.00Costars domain-containing protein (Fragment) n=1 T... [more]
A0A1D1YQS0_9ARAE7.660e-2359.49Costars family protein (Fragment) n=1 Tax=Anthuriu... [more]
A0A7S2SKT3_9STRA9.160e-2362.82Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
G0QMS5_ICHMG9.830e-2358.97Costars domain-containing protein n=1 Tax=Ichthyop... [more]
A0A843XMW1_COLES1.600e-2258.23Costars domain-containing protein n=1 Tax=Colocasi... [more]
A0A5B8MVS8_9CHLO2.530e-2257.14Costars domain-containing protein n=1 Tax=Chloropi... [more]
COSA_DICDI3.850e-2257.69Protein costars n=1 Tax=Dictyostelium discoideum T... [more]
UPI00129D9A921.090e-2155.70costars family protein WS02710_H03 n=1 Tax=Nymphae... [more]
A0A8K1CIZ8_PYTOL3.980e-2159.74Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6G0X2G9_9STRA4.520e-2157.32Costars domain-containing protein n=1 Tax=Aphanomy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_3contigContig_3:1710647..1712480 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|55167|CE55166_20
DescriptionCostars
COG categoryS
Max annot lvl5878|Ciliophora
EggNOG OGsKOG3376@1|root,KOG3376@2759|Eukaryota,3ZFPH@5878|Ciliophora
Evalue7.92e-25
Seed ortholog5932.XP_004037464.1
Hectar predicted targeting categoryother localisation
TranscriptId55489
TrackFilteredModels1
ProteinId55167
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|55167gene_465Tribonema minus UTEX_B_3156 geneContig_3 1710647..1712480 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_465_2exon_465_2Tribonema minus UTEX_B_3156 exonContig_3 1710647..1711016 -
exon_465_1exon_465_1Tribonema minus UTEX_B_3156 exonContig_3 1712399..1712480 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_465UTR3_465Tribonema minus UTEX_B_3156 three_prime_UTRContig_3 1710647..1710840 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_465CDS_465Tribonema minus UTEX_B_3156 CDSContig_3 1712399..1712480 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|55167Trimin1|55167|CE55166_20Tribonema minus UTEX_B_3156 polypeptideContig_3 1710841..1712480 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_465 ID=mRNA_465|Name=jgi.p|Trimin1|55167|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=452bp|location=Sequence derived from alignment at Contig_3:1710647..1712480- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AACAACGAGCAGATCGAGCGGGAGGTGGAGCATCTGCGCAAGGTCATCAC
CCGCTTGGGCACTCCACAGGCAGATGGCAAAATTGGCGTGACTTACGGCG
TCCTGTTCGACGACGAGGAGGGGCAGGACTACTTTGAGGCGCTCATGGGC
ACGCTCAAGGCCGCCAAGAAGCGCGGCGTGGTGGACTTCCAGGGGCAGAT
GCTGCTCAAAGGCGCGCACGACAGCGTCATGGTCACGCTCCTAAAACCGC
TCACTTGAGGGAGGCGCAGTGGCAATATGTCGTGGCTGCAGAAGCATTTT
CTGACGCGTCGCGCTGGTGCGTGCGTGTGTTTGAGTGATACGCAGTACAT
GTTGTCTGCCGTGGTTGAGGATCCGGTGCATTTGAGGACCGCTGTTGTAC
CTCGTTCAGACGTTGATGTTTGTTGTCTAATGATCAGAGCACATTACCAT
CC
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protein sequence of jgi.p|Trimin1|55167

>Trimin1|55167|CE55166_20 ID=Trimin1|55167|CE55166_20|Name=jgi.p|Trimin1|55167|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=86bp
NNEQIEREVEHLRKVITRLGTPQADGKIGVTYGVLFDDEEGQDYFEALMG
TLKAAKKRGVVDFQGQMLLKGAHDSVMVTLLKPLT*
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mRNA from alignment at Contig_3:1710647..1712480-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_465 ID=mRNA_465|Name=jgi.p|Trimin1|55167|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1834bp|location=Sequence derived from alignment at Contig_3:1710647..1712480- (Tribonema minus UTEX_B_3156 )
AACAACGAGCAGATCGAGCGGGAGGTGGAGCATCTGCGCAAGGTCATCAC
CCGCTTGGGCACTCCACAGGCAGATGGCAAAAGTGAGTGACCTCTGTGCC
GAGAGGCTGCACACAACTTTGACGCTGGCGTAGGCAGCAAGCATCCAGCG
AAGGCTTGCAAATACTGGGCTAGGCAAGGGCAAGATTATATACTGAGCAC
GAGAGGCAAACTCCTAGTCATTTGCAGACCAGACCACTACGATGGGTCTG
TGCAGATGCACACAGATTCGTATTGCTATCTTCTGCGCCCGCGCCTAGCA
TACGGCTGGCTGATCAGGAGTCAGCGCTGCATAAGAGCAGCAGCTCATTG
CCGAGGCAAACTCAAACGCTCAAAGCGCAGCACATTCAAGAGTGACAAAT
TCAACATGTTAACTTGCTTTGCAGCAGCACCGACTCCAACTTGTCATGGC
TGTTGAGGTAAGATCAGGGCTCGTTTCATCTGAGAGACATCACAATGACC
CGCTGACCGACGCAGTATGAGAAAGCCAGGATAGTGTCCTTATCCAAGAG
CATTGCTTGCCAATGTAGGTTTAGTGGGCCGGGACTGTGTACTGGACACT
TTTGATGCATCACTTGAGAGTTTTTGCATGTTCTCATGCACACATTCATC
GCGCTTACAATGCTGTCTTGAATTGTCACATGTACAAGTGAGTCATCACC
AAATTTGAGGCAGCATCCTTCAACTCAAGGTGGTGCTGGCTTTTTCCAAT
CAAAGTCGGCGTGACGCACGGCGTGATGTTCAGTGTCCCTTGCAGTCCGT
TGCGGGTTTTACACACATTCCAGAACCTCTCATCGTGCCGCTCAGTTGAT
TCTGATGCTGGCTTGTTTCTGCCCGCTTGAAGTCAGCATGACATACATGC
TGCTCGACAGCGAGCAAAAGTAGGACTACACGGTCTTTTGACACTTGTGC
ACAAATTGCTCATCGCTGCCAGAAACCTCAAGTACTTCAGCTTTTAAACA
GTGTGTTTGTTGTGCTTTCTTTCTGCCATATTCAAAGTCGGCATGACTTA
CGACGTGCTGTTTGATGGGGAGGCGCAGTAATGTAGTCCCCCAGATGCTT
TACGCACATTGCTCTCACTGTCAGAAGGCTCTCGCACGTCAACTTCAAGA
GCTTTTTGTTGTCTGGTGTTACATCCGCCATTCTCAGTCGGCGTGACGTG
CTGTTTGACGACACACAAGGGCAGGAATACAGTCCTTCAGATGCTTTACG
CACATTGCTCATCACTTAAACAAAGTTTTCATACTTCACCTTACACGCTA
TTCCTGACCTTCCGCAGTCGGCGTAACATACGGCGTCCTATTTGACGACG
AGAAGGGGCAGGACCACTTTGAGGCGCTCATGGGCACATTGCTCATCACT
TTCAGAAAGCTTTCATATGTGAACTTCAATAACTTATTGTTGTCTTTTTT
TTCGCCATGCGCAGTTGGCGTGACTTACGGCGTCCTGTTCGACGACGAGG
AGGGGCAGGACTACTTTGAGGCGCTCATGGGCACGCTCAAGGCCGCCAAG
AAGCGCGGCGTGGTGGACTTCCAGGGGCAGATGCTGCTCAAAGGCGCGCA
CGACAGCGTCATGGTCACGCTCCTAAAACCGCTCACTTGAGGGAGGCGCA
GTGGCAATATGTCGTGGCTGCAGAAGCATTTTCTGACGCGTCGCGCTGGT
GCGTGCGTGTGTTTGAGTGATACGCAGTACATGTTGTCTGCCGTGGTTGA
GGATCCGGTGCATTTGAGGACCGCTGTTGTACCTCGTTCAGACGTTGATG
TTTGTTGTCTAATGATCAGAGCACATTACCATCC
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Coding sequence (CDS) from alignment at Contig_3:1710647..1712480-

>mRNA_465 ID=mRNA_465|Name=jgi.p|Trimin1|55167|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=258bp|location=Sequence derived from alignment at Contig_3:1710647..1712480- (Tribonema minus UTEX_B_3156 )
AACAACGAGCAGATCGAGCGGGAGGTGGAGCATCTGCGCAAGGTCATCAC
CCGCTTGGGCACTCCACAGGCAGATGGCAAAATTGGCGTGACTTACGGCG
TCCTGTTCGACGACGAGGAGGGGCAGGACTACTTTGAGGCGCTCATGGGC
ACGCTCAAGGCCGCCAAGAAGCGCGGCGTGGTGGACTTCCAGGGGCAGAT
GCTGCTCAAAGGCGCGCACGACAGCGTCATGGTCACGCTCCTAAAACCGC
TCACTTGA
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