mRNA_4619 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|140620
Unique NamemRNA_4619
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|140620 vs. uniprot
Match: A0A836CC48_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC48_9STRA)

HSP 1 Score: 131 bits (329), Expect = 6.190e-36
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1 
Query:    1 RGCIMELTILCNEGAEELLNAGVIPAVMAAMNAHVGKAVLQRFGIIIITKLLQANIPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVCIGELFSDATEDRLI 312
            RGCIMELTILCNEGAEELLNAGVIPAVMAAMNAHVGKAVLQRFGIIIITKLLQANIPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVCIGELFSDATEDRLI
Sbjct:    1 RGCIMELTILCNEGAEELLNAGVIPAVMAAMNAHVGKAVLQRFGIIIITKLLQANIPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVCIGELFSDATEDRLI 104
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BLAST of jgi.p|Trimin1|140620 vs. uniprot
Match: A0A836CBA2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBA2_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 2.940e-15
Identity = 74/105 (70.48%), Postives = 83/105 (79.05%), Query Frame = 1 
Query:    1 RGCIMELTILCNEG-AEELLNAGVIPAVMAAMNAHVGKAVLQRFGIIIITKLLQANI-PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVCIGELFSDATEDRL 309
            RG I+ L  +C  G A ELL+AGV+PAVMA MNAHVG A+LQ  GI IIT LLQAN+ P      XXXXXXXXXXXXXXXXXXXXXXXXX+CIG+L+SD TEDRL
Sbjct:   12 RGGIINLVEMCEHGGAAELLDAGVLPAVMAPMNAHVGDALLQTLGICIITSLLQANVVPAEHFITXXXXXXXXXXXXXXXXXXXXXXXXXICIGDLWSDVTEDRL 116
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|140620 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CC48_9STRA6.190e-36100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CBA2_9STRA2.940e-1570.48Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_46contigContig_46:444776..445261 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|140620|gw1.46.74.1
Hectar predicted targeting categoryother localisation
TranscriptId140942
TrackFilteredModels1
ProteinId140620
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|140620gene_4619Tribonema minus UTEX_B_3156 geneContig_46 444776..445261 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4619_1exon_4619_1Tribonema minus UTEX_B_3156 exonContig_46 444776..445261 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4619CDS_4619Tribonema minus UTEX_B_3156 CDSContig_46 444776..445261 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|140620Trimin1|140620|gw1.46.74.1Tribonema minus UTEX_B_3156 polypeptideContig_46 444776..445261 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4619 ID=mRNA_4619|Name=jgi.p|Trimin1|140620|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=486bp|location=Sequence derived from alignment at Contig_46:444776..445261+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGAGGATGTATCATGGAATTAACCATATTGTGTAATGAGGGGGCGGAGGA
GCTGCTCAATGCCGGTGTGATACCCGCCGTCATGGCGGCCATGAACGCTC
ATGTCGGCAAAGCAGTGCTGCAGAGATTTGGCATCATCATCATTACCAAA
CTGCTGCAGGCGAATATTCCGGCTGAGCACTTCATCACCGCCGGCATACA
CCGCTCCGTTATAGCGGCCATGGACACCCACATCGGCGACAGCCAATTGC
AGCGCAATTGTGTTGTTTGCATTGGAGAGCTGTTTAGCGACGCTACGGAA
GATCGTCTGATCCAAGCGGGTGCACTGCGCGTGTTTATTGCGACGATGAA
CAGGCACATCGGTCACACCGGAGTGCAGTGGGAGTGTTTTCTCAACATTG
CGAAAATATGGAGAGATGGCACAGCGGAGCGCTTGATTACTGACGACTTG
CACCGCGCCGTCCTGGCGAGTATGGGCGCCCACATC
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protein sequence of jgi.p|Trimin1|140620

>Trimin1|140620|gw1.46.74.1 ID=Trimin1|140620|gw1.46.74.1|Name=jgi.p|Trimin1|140620|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=162bp
RGCIMELTILCNEGAEELLNAGVIPAVMAAMNAHVGKAVLQRFGIIIITK
LLQANIPAEHFITAGIHRSVIAAMDTHIGDSQLQRNCVVCIGELFSDATE
DRLIQAGALRVFIATMNRHIGHTGVQWECFLNIAKIWRDGTAERLITDDL
HRAVLASMGAHI
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mRNA from alignment at Contig_46:444776..445261+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4619 ID=mRNA_4619|Name=jgi.p|Trimin1|140620|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=486bp|location=Sequence derived from alignment at Contig_46:444776..445261+ (Tribonema minus UTEX_B_3156 )
AGAGGATGTATCATGGAATTAACCATATTGTGTAATGAGGGGGCGGAGGA
GCTGCTCAATGCCGGTGTGATACCCGCCGTCATGGCGGCCATGAACGCTC
ATGTCGGCAAAGCAGTGCTGCAGAGATTTGGCATCATCATCATTACCAAA
CTGCTGCAGGCGAATATTCCGGCTGAGCACTTCATCACCGCCGGCATACA
CCGCTCCGTTATAGCGGCCATGGACACCCACATCGGCGACAGCCAATTGC
AGCGCAATTGTGTTGTTTGCATTGGAGAGCTGTTTAGCGACGCTACGGAA
GATCGTCTGATCCAAGCGGGTGCACTGCGCGTGTTTATTGCGACGATGAA
CAGGCACATCGGTCACACCGGAGTGCAGTGGGAGTGTTTTCTCAACATTG
CGAAAATATGGAGAGATGGCACAGCGGAGCGCTTGATTACTGACGACTTG
CACCGCGCCGTCCTGGCGAGTATGGGCGCCCACATC
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Coding sequence (CDS) from alignment at Contig_46:444776..445261+

>mRNA_4619 ID=mRNA_4619|Name=jgi.p|Trimin1|140620|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=486bp|location=Sequence derived from alignment at Contig_46:444776..445261+ (Tribonema minus UTEX_B_3156 )
AGAGGATGTATCATGGAATTAACCATATTGTGTAATGAGGGGGCGGAGGA
GCTGCTCAATGCCGGTGTGATACCCGCCGTCATGGCGGCCATGAACGCTC
ATGTCGGCAAAGCAGTGCTGCAGAGATTTGGCATCATCATCATTACCAAA
CTGCTGCAGGCGAATATTCCGGCTGAGCACTTCATCACCGCCGGCATACA
CCGCTCCGTTATAGCGGCCATGGACACCCACATCGGCGACAGCCAATTGC
AGCGCAATTGTGTTGTTTGCATTGGAGAGCTGTTTAGCGACGCTACGGAA
GATCGTCTGATCCAAGCGGGTGCACTGCGCGTGTTTATTGCGACGATGAA
CAGGCACATCGGTCACACCGGAGTGCAGTGGGAGTGTTTTCTCAACATTG
CGAAAATATGGAGAGATGGCACAGCGGAGCGCTTGATTACTGACGACTTG
CACCGCGCCGTCCTGGCGAGTATGGGCGCCCACATC
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