mRNA_4617 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|166663 vs. uniprot
Match: A0A835YUG0_9STRA (SET domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUG0_9STRA) HSP 1 Score: 537 bits (1383), Expect = 6.750e-193 Identity = 269/269 (100.00%), Postives = 269/269 (100.00%), Query Frame = 1 Query: 1 MGRVLRATRAFAPGDLVLREAPLLVFVDDDGGHDLVAKALKLSEEERLKLLDMYHLRPGDDPRFAIASYVTEKIEKKVRSVVSSRASESAYRFAFEAISVAKFNAHDFTTASDQSLSGLFPLASLACHSCDANCTFTTMSPSGVISYYAARRISEGDSISILYDGRNAGMPTLQRWKLMAKGRDFMCQCLRCTGPDAMSGIKCHRCQEGVSMPTFPRLLPSTRELPTIADATWLCDTCGCAPEPSMLAKQLTEVSDLTTQLLNVVGSNR 807 MGRVLRATRAFAPGDLVLREAPLLVFVDDDGGHDLVAKALKLSEEERLKLLDMYHLRPGDDPRFAIASYVTEKIEKKVRSVVSSRASESAYRFAFEAISVAKFNAHDFTTASDQSLSGLFPLASLACHSCDANCTFTTMSPSGVISYYAARRISEGDSISILYDGRNAGMPTLQRWKLMAKGRDFMCQCLRCTGPDAMSGIKCHRCQEGVSMPTFPRLLPSTRELPTIADATWLCDTCGCAPEPSMLAKQLTEVSDLTTQLLNVVGSNR Sbjct: 1 MGRVLRATRAFAPGDLVLREAPLLVFVDDDGGHDLVAKALKLSEEERLKLLDMYHLRPGDDPRFAIASYVTEKIEKKVRSVVSSRASESAYRFAFEAISVAKFNAHDFTTASDQSLSGLFPLASLACHSCDANCTFTTMSPSGVISYYAARRISEGDSISILYDGRNAGMPTLQRWKLMAKGRDFMCQCLRCTGPDAMSGIKCHRCQEGVSMPTFPRLLPSTRELPTIADATWLCDTCGCAPEPSMLAKQLTEVSDLTTQLLNVVGSNR 269
BLAST of jgi.p|Trimin1|166663 vs. uniprot
Match: A0A835YUN6_9STRA (SET domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUN6_9STRA) HSP 1 Score: 420 bits (1080), Expect = 2.010e-144 Identity = 206/263 (78.33%), Postives = 231/263 (87.83%), Query Frame = 1 Query: 1 MGRVLRATRAFAPGDLVLREAPLLVFVDDDGGHDLVAKALKLSEEERLKLLDMYHLRPGDDPRFAIASYVTEKIEKKVRSVVSSRASESAYRFAFEAISVAKFNAHDFTTASDQSLSGLFPLASLACHSCDANCTFTTMSPSGVISYYAARRISEGDSISILYDGRNAGMPTLQRWKLMAKGRDFMCQCLRCTGPDAMSGIKCHRCQEGVSMPTFPRLLPSTRELPTIADATWLCDTCGCAPEPSMLAKQLTEVSDLTTQLLN 789 MGRVL ATR+FAPGDLV+RE PLLVFVD DGGHDL+ KALK+SEE+RLKLLDMYHLRPGDDPRF IASYV E+ EKK R+VVS+RAS SAYRFA+E IS+A FN+HDF T+S+QSLSGLFPLASLACHSC ANCTFTT +PSGVI YYAAR I+EGD ISILYD R AGMPTLQRW +MAKG+DF+CQC C GPDAMSG+KC RC EGV+MPTFPRLLP+TRELPTI DATWLCD+CG APEP +LAKQL+E LTTQ+ N Sbjct: 1 MGRVLWATRSFAPGDLVMRERPLLVFVDGDGGHDLIDKALKMSEEDRLKLLDMYHLRPGDDPRFTIASYVKEQSEKKARTVVSARASWSAYRFAYEVISMAAFNSHDFATSSEQSLSGLFPLASLACHSCTANCTFTTANPSGVICYYAARSIAEGDPISILYDVRYAGMPTLQRWMVMAKGKDFVCQCSLCIGPDAMSGVKCLRCHEGVAMPTFPRLLPTTRELPTITDATWLCDSCGHAPEPYILAKQLSEADKLTTQVTN 263
BLAST of jgi.p|Trimin1|166663 vs. uniprot
Match: A0A835Z1T0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1T0_9STRA) HSP 1 Score: 181 bits (459), Expect = 5.030e-50 Identity = 108/273 (39.56%), Postives = 149/273 (54.58%), Query Frame = 1 Query: 1 MGRVLRATRAFAPGDLVLREAPLLVFVDDDGGHDLVAKALKLSEEERLKLLDMYHLRPGDDPRFAIASYVTE--KIEKKVRSVVSSRASESAYRFAFEAISVAKFNAHDFTTASDQSL------------------SGLFPLASLACHSCDANCTFTTMSPSGVISYYAARRISEGDSISILYDGRNAGMPTLQRWKLMAKGRDFMCQCLRCTGPDAMSGIKCHRCQEGVSMPTFPRLLPSTRELPTIADATWLCDTCGCAPEPSMLAKQLTE 759 MG+VL+A R FAPGDLVLRE PL+ FV L+ K ++++ E+R +L +M L G PRF + E ++ + ++ + + + A VA+FN+ +F+ Q + +F LAS A HSC NC FTT +P G +SYYAA I+ GD ++I GM TL RW +A+ RD +C C RC GPDA GI+C RC+ GV++PT P RE+P +A ATW C+ CG APEP LA L E Sbjct: 15 MGQVLQAVRDFAPGDLVLRERPLVDFVTGSRRLTLLQKFVRMTPEQRQELCEMRMLAHGGAPRFTSCEQLMEDRQLPAQAQARLIRPSLDIPTSMWLTAYQVARFNSQEFSIVPLQQEHLNHAQRHLPPEVPQMRPAAVFSLASKAAHSCVPNCLFTTKNPYGAMSYYAAHPIAAGDLVTIARVACG-GMSTLDRWAQLARRRDCLCACARCAGPDATRGIRCARCRNGVAVPTHAPPPPQAREVPALAAATWRCNQCGAAPEPGALAAALAE 286
BLAST of jgi.p|Trimin1|166663 vs. uniprot
Match: A0A835YUI3_9STRA (MYND-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUI3_9STRA) HSP 1 Score: 176 bits (445), Expect = 1.450e-47 Identity = 109/283 (38.52%), Postives = 150/283 (53.00%), Query Frame = 1 Query: 1 MGRVLRATRAFAPGDLVLREAPLLVFVDDDGGHDLVAKALKLSEEERLKLLDMYHLRPGDDPRFAIASYVTEKIEKKVR-------SVVSSRASESAYRFAFEAI--------SVAKFNA-----------------HDFTTASDQSLSGLFPLASLACHSCDANCTFTTMSPSGVISYYAARRISEGDSISILYDGRNAGMPTLQRWKLMAKGRDFMCQCLRCTGPDAMSGIKCHRCQEGVSMPTFPRLLPSTRELPTIADATWLCDTCGCAPEPSMLAKQL 753 MGRVL+ATRAF+PGDLVLRE PLLV G D + + LS E++ ++LD Y LRPG+ RFA ++ + S S++ +R +EA+ S+ KF+A T+ + LF +AS A HSC NC+ T+ +P G+ISYYAA I+ GD I++ + +A PTL+RW +A+ +D +C C RC GPD G+ +GV MPTF P R LP++ DA W CD CG PE + LA QL Sbjct: 15 MGRVLQATRAFSPGDLVLREEPLLVHDVKRPGSDFDS-FMALSPEQQQQVLDFYRLRPGETARFASCERRMAEVNRAAHVAAAVWMSAHGQGMSDAQWRTTYEAVRSTDFNLCSIFKFHACPIATLQWRKDNLMRARAQLRTSPELPAGALFRVASKAAHSCAPNCSSTSRNPCGIISYYAAHAITAGDLITVACECSSA-FPTLERWAGLARRKDCVCACARCAGPDVTCGVXXXXXADGVVMPTFASPPPHARALPSLEDAAWRCDACGAVPERARLAAQL 295
BLAST of jgi.p|Trimin1|166663 vs. uniprot
Match: A0A835YS84_9STRA (MYND-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS84_9STRA) HSP 1 Score: 174 bits (442), Expect = 5.440e-47 Identity = 110/289 (38.06%), Postives = 150/289 (51.90%), Query Frame = 1 Query: 1 MGRVLRATRAFAPGDLVLREAPLLVFVDDDGGHDLVAKALKLSEEERLKLLDMYHLRPGDDPRFAIASYVTEKIEKKVRSVVSSRASESA----------YRFAFEAISVAKFNAHDFTT--------------------ASDQSLS--GLFPLASLACHSCDANCTFTTMSPSGVISYYAARRISEGDSISILYDGRNAGMPT--LQRWKLMAKGRDFMCQCLRCTGPDAMSGIKCHRCQEGVSMPTFPRLLPSTRELPTIADATWLCDTCGCAPEPSMLAKQLTEVS 765 +GRVL+ATRAF+PGDLVLRE PL+ +++ H ++ + +S EE+ ++LDM L+ G+ FA ++E R V R S +R A++ SV N ASD+ ++ +F LAS A +C NC TT +P +SYYAA I+ GD I+I AG PT L+ W+ +A+ RD +C C +CTGPD M G+KC RC GV P F P RELP + DA W CD CG APE + LA QL E + Sbjct: 15 LGRVLQATRAFSPGDLVLREQPLMCYINAVP-HSVLNAFMTMSAEEQQQVLDMRKLQFGETAHFASCERRMGELEPMARCVAEERMHASGLQGRRLRDDLFRTAYDLHSVTNLNHRRMADLPWQKDDLERLKAQLPPGYPASDEEITHGAVFRLASRAVPACVPNCVSTTQNPYNYMSYYAAHPIAAGDLITIALPRSGAGRPTATLEWWEQLARVRDAVCTCAKCTGPDVMCGVKCARCPNGVVTPMFTPPQPHERELPKLEDAAWRCDACGAAPERAALAAQLAEAA 302
BLAST of jgi.p|Trimin1|166663 vs. uniprot
Match: A0A835YNU4_9STRA (MYND-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNU4_9STRA) HSP 1 Score: 169 bits (427), Expect = 1.280e-45 Identity = 102/271 (37.64%), Postives = 151/271 (55.72%), Query Frame = 1 Query: 1 MGRVLRATRAFAPGDLVLREAPLLVFVDDDGGHDLVAKALK-LSEEERLKLLDMYHLRPGDDPRF-AIASYVTEKIEKKVRSVVSSRASESAYRFAFEAISVAKFNAHDFTTASDQSLSGLFPLASLACHSCDANCTFTTMSPSGVISYYAARRISEGDSISILYDGRNAGMPTLQRWKLMAKGRDFMCQCLRCTGPDAMSGIKCHRCQEGVSMPTFPRLLPSTRELPTIADATWLCDTCGCAPEPSMLAKQLTEVSDLTTQLLNVVGSNR 807 +GRVL+AT+ F+PGDLVLRE PLL G + ++++ ++ LS E+R +L M+HLR GD PRF + +S T + RS ++ +A R AK H A HSC NC +T+ +P G +SY+AA+ I+ GD I+I Y + PTL+RW +A+ +DF+C C +C+GP A G++C RC +GV++PTF P R +P + A W CD CG AP+ + LA+QL E L ++ + R Sbjct: 14 LGRVLQATKTFSPGDLVLREEPLL-----QGFNAMLSELIEALSPEKREQLFAMHHLRLGDRPRFLSSSSSSTARCHAVGRSAAERDSTGTASR-----PPAAKVGHHICAGVK-------------AAHSCTPNCLWTSQTPCGAMSYFAAQPIAAGDPITICYSDASTA-PTLERWAELAQAKDFICACPQCSGPGATRGVRCARCADGVAVPTFAPPPPRARAVPGMEAAAWRCDACGRAPDAAHLAQQLAEAQRLEARVHAIAEDTR 260
BLAST of jgi.p|Trimin1|166663 vs. uniprot
Match: A0A835YTD3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTD3_9STRA) HSP 1 Score: 167 bits (424), Expect = 1.550e-44 Identity = 109/296 (36.82%), Postives = 151/296 (51.01%), Query Frame = 1 Query: 1 MGRVL---RATRAFAPGDLVLREAPLLVFVDDDGGHDLVAKALKLSEEERLKLLDMYHLRPGDDPRFAIASYVTEKIEKKVRSVVS--------------------SRASESAYRFAFEAISVAKFNA------------------HDFTTASDQSLSGLFPLASLACHSCDANCTFTTMSPSGVISYYAARRISEGDSISILYD--GRNAGMPTLQRWKLMAKGRDFMCQCLRCTGPDAMSGIKCHRCQEGVSMPTFPRLLPSTRELPTIADATWLCDTCGCAPEPSMLAKQLTE 759 M RVL +ATR F+PGDLVLREAPLL + D L+ + LS E++ +++DMY L G + FA V +IE R+ + A +S A+E +S FN H F +A+++ ++ LF +AS A +SC NC T +P GVISY A I+ GD I++ + + PTL+RW +A RD +C C +C PD G+KC RC +GV+MPTF P R LP++ DA W CD CG APE + LA QL + Sbjct: 15 MSRVLSELQATRVFSPGDLVLREAPLLSY-DTKDSVALLDDFMALSPEKQQQVMDMYRLNDGANAHFASCEGVLAEIEVLARAAATLWMSVHRHEHLLGGPGDTQWQTAHDSMRSIAYELLSRVLFNTIISATLQWHKGSLQAQAQHSFVSATEEPIA-LFSVASKAAYSCVPNCISTWQNPYGVISYCAVHPIAAGDPITVAHRHLACSNAYPTLERWSTLAFRRDLVCTCAQCKRPDVTRGVKCARCAKGVAMPTFTPPPPHVRRLPSLQDAAWRCDACGAAPERTRLAAQLAQ 308
BLAST of jgi.p|Trimin1|166663 vs. uniprot
Match: A0A836CCS1_9STRA (MYND-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCS1_9STRA) HSP 1 Score: 166 bits (420), Expect = 8.950e-44 Identity = 114/288 (39.58%), Postives = 149/288 (51.74%), Query Frame = 1 Query: 1 MGRVL---RATRAFAPGDLVLREAPLLVFVDDDGGHDLVAKALKLSEEERLKLLDMYHLRPGDDPRFAIASYVTEKIEKKVRSVVS--SRAS-----------ESAYRFAFEAISVAKFNAHDFTTASDQSLS-----------------GLFPLASLACHSCDANCTFTTMSPSGVISYYAARRISEGDSISILYDGRNAG--MPTLQRWKLMAKGRDFMCQCLRCTGPDAMSGIKCHRCQEGVSMPTFPRLLPSTRELPTIADATWLCDTCGCAPEPSMLAKQLTE 759 M RVL +ATR F+PGDLVLREAPLL F D L+ + LS EE+ ++LD++ L G + FA + +E + + RA ++ A E +S A F++ FTT Q S LF +AS A +SC NC + +P GVISYYAA I+ GD I+I + G PTL+RW ++A RD +C C +CTGPD G+KC C EGV MPTF RELP++ DA W CDTC PE + LA QL E Sbjct: 15 MSRVLSELQATRDFSPGDLVLREAPLLSFTTKDP-VSLLDDFMALSPEEQQQVLDLFRLNDGANAHFASCEGLMATVELLADAAAALWMRAHGQGLSDAQGHYDTMRNTAHELLSRAMFSSVPFTTWQRQKDSLQAQAQLSYNSYESGTVALFRVASKAAYSCVPNCISSWQNPYGVISYYAAHPIAAGDPITIAFGTLTPGNATPTLERWSMLASRRDVVCTCAQCTGPDVTRGVKCACCAEGVVMPTFTPPPLHVRELPSLEDAEWRCDTCDKEPERTRLAAQLAE 301
BLAST of jgi.p|Trimin1|166663 vs. uniprot
Match: A0A835YVF7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVF7_9STRA) HSP 1 Score: 142 bits (359), Expect = 7.800e-38 Identity = 90/241 (37.34%), Postives = 130/241 (53.94%), Query Frame = 1 Query: 1 MGRVLRATRAFAPGDLVLREAPLLVFVDD-DGGHDLVAKALKLSEEERLKLLDMYHLRPGDDPRFAIASYVTEKIEKKVRSVVS---------SRASESAYRFAFEAISVAKFNAHDFTTASDQSL------------------SGLFPLASLACHSCDANCTFTTMSPSGVISYYAARRISEGDSISILYDGRNAGMPTLQRWKLMAKGRDFMCQCLRCTGPDAMSGIKCHRCQEGVSMP 639 MGRVL+ATRAF+PGDLVLREAPLL + D+ H ++ S EE+ ++LD++ L+ G+ F ++E R V + +A ++A+ AFE +S+A+FN Q + +F LAS A H+C NC TT +P G +SYYAA+ I+ GD ++ Y +A PTL+R + +A+ +DF+C C RC PDA G+ C RC GV MP Sbjct: 15 MGRVLQATRAFSPGDLVLREAPLLFYFDELPNSH--FDTFMETSAEEQQQILDLHRLKLGEPAHFTSCERRVGELEALARRVAAIWLRSSSSHGQAPDAAWPLAFELLSIAEFNGQRMANLPWQEAILKQQQARLPPGQPEMAGAAVFCLASRAVHACVLNCAVTTQNPYGGMSYYAAQPIAAGDLNTVAYADSSAA-PTLERLERLARTKDFVCACARCAAPDATRGVACARCANGVVMP 252
BLAST of jgi.p|Trimin1|166663 vs. uniprot
Match: A0A835YJF2_9STRA (MYND-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJF2_9STRA) HSP 1 Score: 132 bits (332), Expect = 9.120e-32 Identity = 93/281 (33.10%), Postives = 135/281 (48.04%), Query Frame = 1 Query: 1 MGRVLRATRAFAPGDLVLREAPLLVFVDDDGGHDLVAKALKLSEEERLKLLDMYHLRPGDDPRFAIASYVTEKIEKKVRSVVSSRASESA-----------------YRFAFEAISVAKFNAHDFTTA--SDQSLSGLFPLASLACHSCDANCTFTTMSPSGVISYYAARRISEGDSISILYDGRNAGMPTLQRWKLMAKGRDFMCQCLRCTGPDAMSGIKCHRCQEGVSMPTFPRLLPSTRELPTIADATWLCDTCGCAPEPSMLAKQLTEVSDLTTQLL 786 MGRVL+A+R FAPGDLVLRE LL +V++ L + L +E+ ++LD++ LR G+ RF I ++ S A + YR ++ S+A+FNAHD T ++S++ + + + F + +YA I+ GD I+I Y NA PTL+RW +A+ +DF+C CLRC +GV MPTF RELP + DA W CD CG AP+ LA QL E + + + L Sbjct: 15 MGRVLQASREFAPGDLVLREEALLSYVNEM--PYLYDGFMALPSQEQQQVLDLHRLRYGETARFTSCEQRMAYIAAEIAVTASDAAGAAVQPINATNPLGQAVQDFTYRMMYKLCSMAQFNAHDATLLPWQEESIARMQAQLPPEARKLEVSAVFRVATR-----FYAVHPITAGDLITIAYKSWNA-TPTLERWTELARSKDFVCTCLRCA--------------DGVVMPTFSLPPQHARELPELEDAAWRCDACGAAPDSVRLAAQLAEAARMEARAL 273 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|166663 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_4617 ID=mRNA_4617|Name=jgi.p|Trimin1|166663|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=810bp|location=Sequence derived from alignment at Contig_46:438831..439640+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGGCCGTGTGCTGCGGGCAACGAGAGCTTTCGCCCCTGGCGATCTAGTback to top protein sequence of jgi.p|Trimin1|166663 >Trimin1|166663|e_gw1.46.113.1 ID=Trimin1|166663|e_gw1.46.113.1|Name=jgi.p|Trimin1|166663|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=270bp MGRVLRATRAFAPGDLVLREAPLLVFVDDDGGHDLVAKALKLSEEERLKLback to top mRNA from alignment at Contig_46:438831..439640+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_4617 ID=mRNA_4617|Name=jgi.p|Trimin1|166663|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=810bp|location=Sequence derived from alignment at Contig_46:438831..439640+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_46:438831..439640+ >mRNA_4617 ID=mRNA_4617|Name=jgi.p|Trimin1|166663|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=810bp|location=Sequence derived from alignment at Contig_46:438831..439640+ (Tribonema minus UTEX_B_3156 )back to top |