mRNA_4617 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|166663
Unique NamemRNA_4617
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|166663 vs. uniprot
Match: A0A835YUG0_9STRA (SET domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUG0_9STRA)

HSP 1 Score: 537 bits (1383), Expect = 6.750e-193
Identity = 269/269 (100.00%), Postives = 269/269 (100.00%), Query Frame = 1
Query:    1 MGRVLRATRAFAPGDLVLREAPLLVFVDDDGGHDLVAKALKLSEEERLKLLDMYHLRPGDDPRFAIASYVTEKIEKKVRSVVSSRASESAYRFAFEAISVAKFNAHDFTTASDQSLSGLFPLASLACHSCDANCTFTTMSPSGVISYYAARRISEGDSISILYDGRNAGMPTLQRWKLMAKGRDFMCQCLRCTGPDAMSGIKCHRCQEGVSMPTFPRLLPSTRELPTIADATWLCDTCGCAPEPSMLAKQLTEVSDLTTQLLNVVGSNR 807
            MGRVLRATRAFAPGDLVLREAPLLVFVDDDGGHDLVAKALKLSEEERLKLLDMYHLRPGDDPRFAIASYVTEKIEKKVRSVVSSRASESAYRFAFEAISVAKFNAHDFTTASDQSLSGLFPLASLACHSCDANCTFTTMSPSGVISYYAARRISEGDSISILYDGRNAGMPTLQRWKLMAKGRDFMCQCLRCTGPDAMSGIKCHRCQEGVSMPTFPRLLPSTRELPTIADATWLCDTCGCAPEPSMLAKQLTEVSDLTTQLLNVVGSNR
Sbjct:    1 MGRVLRATRAFAPGDLVLREAPLLVFVDDDGGHDLVAKALKLSEEERLKLLDMYHLRPGDDPRFAIASYVTEKIEKKVRSVVSSRASESAYRFAFEAISVAKFNAHDFTTASDQSLSGLFPLASLACHSCDANCTFTTMSPSGVISYYAARRISEGDSISILYDGRNAGMPTLQRWKLMAKGRDFMCQCLRCTGPDAMSGIKCHRCQEGVSMPTFPRLLPSTRELPTIADATWLCDTCGCAPEPSMLAKQLTEVSDLTTQLLNVVGSNR 269          
BLAST of jgi.p|Trimin1|166663 vs. uniprot
Match: A0A835YUN6_9STRA (SET domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUN6_9STRA)

HSP 1 Score: 420 bits (1080), Expect = 2.010e-144
Identity = 206/263 (78.33%), Postives = 231/263 (87.83%), Query Frame = 1
Query:    1 MGRVLRATRAFAPGDLVLREAPLLVFVDDDGGHDLVAKALKLSEEERLKLLDMYHLRPGDDPRFAIASYVTEKIEKKVRSVVSSRASESAYRFAFEAISVAKFNAHDFTTASDQSLSGLFPLASLACHSCDANCTFTTMSPSGVISYYAARRISEGDSISILYDGRNAGMPTLQRWKLMAKGRDFMCQCLRCTGPDAMSGIKCHRCQEGVSMPTFPRLLPSTRELPTIADATWLCDTCGCAPEPSMLAKQLTEVSDLTTQLLN 789
            MGRVL ATR+FAPGDLV+RE PLLVFVD DGGHDL+ KALK+SEE+RLKLLDMYHLRPGDDPRF IASYV E+ EKK R+VVS+RAS SAYRFA+E IS+A FN+HDF T+S+QSLSGLFPLASLACHSC ANCTFTT +PSGVI YYAAR I+EGD ISILYD R AGMPTLQRW +MAKG+DF+CQC  C GPDAMSG+KC RC EGV+MPTFPRLLP+TRELPTI DATWLCD+CG APEP +LAKQL+E   LTTQ+ N
Sbjct:    1 MGRVLWATRSFAPGDLVMRERPLLVFVDGDGGHDLIDKALKMSEEDRLKLLDMYHLRPGDDPRFTIASYVKEQSEKKARTVVSARASWSAYRFAYEVISMAAFNSHDFATSSEQSLSGLFPLASLACHSCTANCTFTTANPSGVICYYAARSIAEGDPISILYDVRYAGMPTLQRWMVMAKGKDFVCQCSLCIGPDAMSGVKCLRCHEGVAMPTFPRLLPTTRELPTITDATWLCDSCGHAPEPYILAKQLSEADKLTTQVTN 263          
BLAST of jgi.p|Trimin1|166663 vs. uniprot
Match: A0A835Z1T0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1T0_9STRA)

HSP 1 Score: 181 bits (459), Expect = 5.030e-50
Identity = 108/273 (39.56%), Postives = 149/273 (54.58%), Query Frame = 1
Query:    1 MGRVLRATRAFAPGDLVLREAPLLVFVDDDGGHDLVAKALKLSEEERLKLLDMYHLRPGDDPRFAIASYVTE--KIEKKVRSVVSSRASESAYRFAFEAISVAKFNAHDFTTASDQSL------------------SGLFPLASLACHSCDANCTFTTMSPSGVISYYAARRISEGDSISILYDGRNAGMPTLQRWKLMAKGRDFMCQCLRCTGPDAMSGIKCHRCQEGVSMPTFPRLLPSTRELPTIADATWLCDTCGCAPEPSMLAKQLTE 759
            MG+VL+A R FAPGDLVLRE PL+ FV       L+ K ++++ E+R +L +M  L  G  PRF     + E  ++  + ++ +   + +        A  VA+FN+ +F+    Q                    + +F LAS A HSC  NC FTT +P G +SYYAA  I+ GD ++I       GM TL RW  +A+ RD +C C RC GPDA  GI+C RC+ GV++PT     P  RE+P +A ATW C+ CG APEP  LA  L E
Sbjct:   15 MGQVLQAVRDFAPGDLVLRERPLVDFVTGSRRLTLLQKFVRMTPEQRQELCEMRMLAHGGAPRFTSCEQLMEDRQLPAQAQARLIRPSLDIPTSMWLTAYQVARFNSQEFSIVPLQQEHLNHAQRHLPPEVPQMRPAAVFSLASKAAHSCVPNCLFTTKNPYGAMSYYAAHPIAAGDLVTIARVACG-GMSTLDRWAQLARRRDCLCACARCAGPDATRGIRCARCRNGVAVPTHAPPPPQAREVPALAAATWRCNQCGAAPEPGALAAALAE 286          
BLAST of jgi.p|Trimin1|166663 vs. uniprot
Match: A0A835YUI3_9STRA (MYND-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUI3_9STRA)

HSP 1 Score: 176 bits (445), Expect = 1.450e-47
Identity = 109/283 (38.52%), Postives = 150/283 (53.00%), Query Frame = 1
Query:    1 MGRVLRATRAFAPGDLVLREAPLLVFVDDDGGHDLVAKALKLSEEERLKLLDMYHLRPGDDPRFAIASYVTEKIEKKVR-------SVVSSRASESAYRFAFEAI--------SVAKFNA-----------------HDFTTASDQSLSGLFPLASLACHSCDANCTFTTMSPSGVISYYAARRISEGDSISILYDGRNAGMPTLQRWKLMAKGRDFMCQCLRCTGPDAMSGIKCHRCQEGVSMPTFPRLLPSTRELPTIADATWLCDTCGCAPEPSMLAKQL 753
            MGRVL+ATRAF+PGDLVLRE PLLV      G D  +  + LS E++ ++LD Y LRPG+  RFA       ++ +          S      S++ +R  +EA+        S+ KF+A                     T+ +     LF +AS A HSC  NC+ T+ +P G+ISYYAA  I+ GD I++  +  +A  PTL+RW  +A+ +D +C C RC GPD   G+      +GV MPTF    P  R LP++ DA W CD CG  PE + LA QL
Sbjct:   15 MGRVLQATRAFSPGDLVLREEPLLVHDVKRPGSDFDS-FMALSPEQQQQVLDFYRLRPGETARFASCERRMAEVNRAAHVAAAVWMSAHGQGMSDAQWRTTYEAVRSTDFNLCSIFKFHACPIATLQWRKDNLMRARAQLRTSPELPAGALFRVASKAAHSCAPNCSSTSRNPCGIISYYAAHAITAGDLITVACECSSA-FPTLERWAGLARRKDCVCACARCAGPDVTCGVXXXXXADGVVMPTFASPPPHARALPSLEDAAWRCDACGAVPERARLAAQL 295          
BLAST of jgi.p|Trimin1|166663 vs. uniprot
Match: A0A835YS84_9STRA (MYND-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS84_9STRA)

HSP 1 Score: 174 bits (442), Expect = 5.440e-47
Identity = 110/289 (38.06%), Postives = 150/289 (51.90%), Query Frame = 1
Query:    1 MGRVLRATRAFAPGDLVLREAPLLVFVDDDGGHDLVAKALKLSEEERLKLLDMYHLRPGDDPRFAIASYVTEKIEKKVRSVVSSRASESA----------YRFAFEAISVAKFNAHDFTT--------------------ASDQSLS--GLFPLASLACHSCDANCTFTTMSPSGVISYYAARRISEGDSISILYDGRNAGMPT--LQRWKLMAKGRDFMCQCLRCTGPDAMSGIKCHRCQEGVSMPTFPRLLPSTRELPTIADATWLCDTCGCAPEPSMLAKQLTEVS 765
            +GRVL+ATRAF+PGDLVLRE PL+ +++    H ++   + +S EE+ ++LDM  L+ G+   FA       ++E   R V   R   S           +R A++  SV   N                          ASD+ ++   +F LAS A  +C  NC  TT +P   +SYYAA  I+ GD I+I      AG PT  L+ W+ +A+ RD +C C +CTGPD M G+KC RC  GV  P F    P  RELP + DA W CD CG APE + LA QL E +
Sbjct:   15 LGRVLQATRAFSPGDLVLREQPLMCYINAVP-HSVLNAFMTMSAEEQQQVLDMRKLQFGETAHFASCERRMGELEPMARCVAEERMHASGLQGRRLRDDLFRTAYDLHSVTNLNHRRMADLPWQKDDLERLKAQLPPGYPASDEEITHGAVFRLASRAVPACVPNCVSTTQNPYNYMSYYAAHPIAAGDLITIALPRSGAGRPTATLEWWEQLARVRDAVCTCAKCTGPDVMCGVKCARCPNGVVTPMFTPPQPHERELPKLEDAAWRCDACGAAPERAALAAQLAEAA 302          
BLAST of jgi.p|Trimin1|166663 vs. uniprot
Match: A0A835YNU4_9STRA (MYND-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNU4_9STRA)

HSP 1 Score: 169 bits (427), Expect = 1.280e-45
Identity = 102/271 (37.64%), Postives = 151/271 (55.72%), Query Frame = 1
Query:    1 MGRVLRATRAFAPGDLVLREAPLLVFVDDDGGHDLVAKALK-LSEEERLKLLDMYHLRPGDDPRF-AIASYVTEKIEKKVRSVVSSRASESAYRFAFEAISVAKFNAHDFTTASDQSLSGLFPLASLACHSCDANCTFTTMSPSGVISYYAARRISEGDSISILYDGRNAGMPTLQRWKLMAKGRDFMCQCLRCTGPDAMSGIKCHRCQEGVSMPTFPRLLPSTRELPTIADATWLCDTCGCAPEPSMLAKQLTEVSDLTTQLLNVVGSNR 807
            +GRVL+AT+ F+PGDLVLRE PLL      G + ++++ ++ LS E+R +L  M+HLR GD PRF + +S  T +     RS     ++ +A R        AK   H                   A HSC  NC +T+ +P G +SY+AA+ I+ GD I+I Y   +   PTL+RW  +A+ +DF+C C +C+GP A  G++C RC +GV++PTF    P  R +P +  A W CD CG AP+ + LA+QL E   L  ++  +    R
Sbjct:   14 LGRVLQATKTFSPGDLVLREEPLL-----QGFNAMLSELIEALSPEKREQLFAMHHLRLGDRPRFLSSSSSSTARCHAVGRSAAERDSTGTASR-----PPAAKVGHHICAGVK-------------AAHSCTPNCLWTSQTPCGAMSYFAAQPIAAGDPITICYSDASTA-PTLERWAELAQAKDFICACPQCSGPGATRGVRCARCADGVAVPTFAPPPPRARAVPGMEAAAWRCDACGRAPDAAHLAQQLAEAQRLEARVHAIAEDTR 260          
BLAST of jgi.p|Trimin1|166663 vs. uniprot
Match: A0A835YTD3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTD3_9STRA)

HSP 1 Score: 167 bits (424), Expect = 1.550e-44
Identity = 109/296 (36.82%), Postives = 151/296 (51.01%), Query Frame = 1
Query:    1 MGRVL---RATRAFAPGDLVLREAPLLVFVDDDGGHDLVAKALKLSEEERLKLLDMYHLRPGDDPRFAIASYVTEKIEKKVRSVVS--------------------SRASESAYRFAFEAISVAKFNA------------------HDFTTASDQSLSGLFPLASLACHSCDANCTFTTMSPSGVISYYAARRISEGDSISILYD--GRNAGMPTLQRWKLMAKGRDFMCQCLRCTGPDAMSGIKCHRCQEGVSMPTFPRLLPSTRELPTIADATWLCDTCGCAPEPSMLAKQLTE 759
            M RVL   +ATR F+PGDLVLREAPLL + D      L+   + LS E++ +++DMY L  G +  FA    V  +IE   R+  +                      A +S    A+E +S   FN                   H F +A+++ ++ LF +AS A +SC  NC  T  +P GVISY A   I+ GD I++ +     +   PTL+RW  +A  RD +C C +C  PD   G+KC RC +GV+MPTF    P  R LP++ DA W CD CG APE + LA QL +
Sbjct:   15 MSRVLSELQATRVFSPGDLVLREAPLLSY-DTKDSVALLDDFMALSPEKQQQVMDMYRLNDGANAHFASCEGVLAEIEVLARAAATLWMSVHRHEHLLGGPGDTQWQTAHDSMRSIAYELLSRVLFNTIISATLQWHKGSLQAQAQHSFVSATEEPIA-LFSVASKAAYSCVPNCISTWQNPYGVISYCAVHPIAAGDPITVAHRHLACSNAYPTLERWSTLAFRRDLVCTCAQCKRPDVTRGVKCARCAKGVAMPTFTPPPPHVRRLPSLQDAAWRCDACGAAPERTRLAAQLAQ 308          
BLAST of jgi.p|Trimin1|166663 vs. uniprot
Match: A0A836CCS1_9STRA (MYND-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCS1_9STRA)

HSP 1 Score: 166 bits (420), Expect = 8.950e-44
Identity = 114/288 (39.58%), Postives = 149/288 (51.74%), Query Frame = 1
Query:    1 MGRVL---RATRAFAPGDLVLREAPLLVFVDDDGGHDLVAKALKLSEEERLKLLDMYHLRPGDDPRFAIASYVTEKIEKKVRSVVS--SRAS-----------ESAYRFAFEAISVAKFNAHDFTTASDQSLS-----------------GLFPLASLACHSCDANCTFTTMSPSGVISYYAARRISEGDSISILYDGRNAG--MPTLQRWKLMAKGRDFMCQCLRCTGPDAMSGIKCHRCQEGVSMPTFPRLLPSTRELPTIADATWLCDTCGCAPEPSMLAKQLTE 759
            M RVL   +ATR F+PGDLVLREAPLL F   D    L+   + LS EE+ ++LD++ L  G +  FA    +   +E    +  +   RA            ++    A E +S A F++  FTT   Q  S                  LF +AS A +SC  NC  +  +P GVISYYAA  I+ GD I+I +     G   PTL+RW ++A  RD +C C +CTGPD   G+KC  C EGV MPTF       RELP++ DA W CDTC   PE + LA QL E
Sbjct:   15 MSRVLSELQATRDFSPGDLVLREAPLLSFTTKDP-VSLLDDFMALSPEEQQQVLDLFRLNDGANAHFASCEGLMATVELLADAAAALWMRAHGQGLSDAQGHYDTMRNTAHELLSRAMFSSVPFTTWQRQKDSLQAQAQLSYNSYESGTVALFRVASKAAYSCVPNCISSWQNPYGVISYYAAHPIAAGDPITIAFGTLTPGNATPTLERWSMLASRRDVVCTCAQCTGPDVTRGVKCACCAEGVVMPTFTPPPLHVRELPSLEDAEWRCDTCDKEPERTRLAAQLAE 301          
BLAST of jgi.p|Trimin1|166663 vs. uniprot
Match: A0A835YVF7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVF7_9STRA)

HSP 1 Score: 142 bits (359), Expect = 7.800e-38
Identity = 90/241 (37.34%), Postives = 130/241 (53.94%), Query Frame = 1
Query:    1 MGRVLRATRAFAPGDLVLREAPLLVFVDD-DGGHDLVAKALKLSEEERLKLLDMYHLRPGDDPRFAIASYVTEKIEKKVRSVVS---------SRASESAYRFAFEAISVAKFNAHDFTTASDQSL------------------SGLFPLASLACHSCDANCTFTTMSPSGVISYYAARRISEGDSISILYDGRNAGMPTLQRWKLMAKGRDFMCQCLRCTGPDAMSGIKCHRCQEGVSMP 639
            MGRVL+ATRAF+PGDLVLREAPLL + D+    H      ++ S EE+ ++LD++ L+ G+   F        ++E   R V +          +A ++A+  AFE +S+A+FN         Q                    + +F LAS A H+C  NC  TT +P G +SYYAA+ I+ GD  ++ Y   +A  PTL+R + +A+ +DF+C C RC  PDA  G+ C RC  GV MP
Sbjct:   15 MGRVLQATRAFSPGDLVLREAPLLFYFDELPNSH--FDTFMETSAEEQQQILDLHRLKLGEPAHFTSCERRVGELEALARRVAAIWLRSSSSHGQAPDAAWPLAFELLSIAEFNGQRMANLPWQEAILKQQQARLPPGQPEMAGAAVFCLASRAVHACVLNCAVTTQNPYGGMSYYAAQPIAAGDLNTVAYADSSAA-PTLERLERLARTKDFVCACARCAAPDATRGVACARCANGVVMP 252          
BLAST of jgi.p|Trimin1|166663 vs. uniprot
Match: A0A835YJF2_9STRA (MYND-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJF2_9STRA)

HSP 1 Score: 132 bits (332), Expect = 9.120e-32
Identity = 93/281 (33.10%), Postives = 135/281 (48.04%), Query Frame = 1
Query:    1 MGRVLRATRAFAPGDLVLREAPLLVFVDDDGGHDLVAKALKLSEEERLKLLDMYHLRPGDDPRFAIASYVTEKIEKKVRSVVSSRASESA-----------------YRFAFEAISVAKFNAHDFTTA--SDQSLSGLFPLASLACHSCDANCTFTTMSPSGVISYYAARRISEGDSISILYDGRNAGMPTLQRWKLMAKGRDFMCQCLRCTGPDAMSGIKCHRCQEGVSMPTFPRLLPSTRELPTIADATWLCDTCGCAPEPSMLAKQLTEVSDLTTQLL 786
            MGRVL+A+R FAPGDLVLRE  LL +V++     L    + L  +E+ ++LD++ LR G+  RF         I  ++    S  A  +                  YR  ++  S+A+FNAHD T     ++S++ +           + +  F   +      +YA   I+ GD I+I Y   NA  PTL+RW  +A+ +DF+C CLRC               +GV MPTF       RELP + DA W CD CG AP+   LA QL E + +  + L
Sbjct:   15 MGRVLQASREFAPGDLVLREEALLSYVNEM--PYLYDGFMALPSQEQQQVLDLHRLRYGETARFTSCEQRMAYIAAEIAVTASDAAGAAVQPINATNPLGQAVQDFTYRMMYKLCSMAQFNAHDATLLPWQEESIARMQAQLPPEARKLEVSAVFRVATR-----FYAVHPITAGDLITIAYKSWNA-TPTLERWTELARSKDFVCTCLRCA--------------DGVVMPTFSLPPQHARELPELEDAAWRCDACGAAPDSVRLAAQLAEAARMEARAL 273          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|166663 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A835YUG0_9STRA6.750e-193100.00SET domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A835YUN6_9STRA2.010e-14478.33SET domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A835Z1T0_9STRA5.030e-5039.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YUI3_9STRA1.450e-4738.52MYND-type domain-containing protein n=1 Tax=Tribon... [more]
A0A835YS84_9STRA5.440e-4738.06MYND-type domain-containing protein n=1 Tax=Tribon... [more]
A0A835YNU4_9STRA1.280e-4537.64MYND-type domain-containing protein n=1 Tax=Tribon... [more]
A0A835YTD3_9STRA1.550e-4436.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CCS1_9STRA8.950e-4439.58MYND-type domain-containing protein n=1 Tax=Tribon... [more]
A0A835YVF7_9STRA7.800e-3837.34Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835YJF2_9STRA9.120e-3233.10MYND-type domain-containing protein n=1 Tax=Tribon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_46contigContig_46:438831..439640 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|166663|e_gw1.46.113.1
BRITEko00000,ko03036
KEGG koko:K11426
Descriptionmethyltransferase activity
COG categoryE
Max annot lvl2759|Eukaryota
EggNOG OGsCOG2940@1|root,KOG2084@2759|Eukaryota
Evalue8.74e-13
Seed ortholog2903.EOD24953
Hectar predicted targeting categoryother localisation
TranscriptId166985
TrackFilteredModels1
ProteinId166663
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166663gene_4617Tribonema minus UTEX_B_3156 geneContig_46 438831..439640 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4617_1exon_4617_1Tribonema minus UTEX_B_3156 exonContig_46 438831..439640 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4617CDS_4617Tribonema minus UTEX_B_3156 CDSContig_46 438831..439640 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166663Trimin1|166663|e_gw1.46.113.1Tribonema minus UTEX_B_3156 polypeptideContig_46 438831..439640 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4617 ID=mRNA_4617|Name=jgi.p|Trimin1|166663|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=810bp|location=Sequence derived from alignment at Contig_46:438831..439640+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCCGTGTGCTGCGGGCAACGAGAGCTTTCGCCCCTGGCGATCTAGT
GCTGAGGGAGGCTCCTCTGCTCGTCTTTGTCGACGACGACGGAGGGCACG
ATCTCGTCGCCAAGGCCCTGAAGCTGTCCGAAGAGGAGAGACTGAAGCTC
CTGGACATGTATCACTTGCGACCCGGCGACGATCCTCGCTTTGCAATTGC
CAGCTATGTGACCGAGAAAATTGAGAAAAAGGTGCGTAGTGTAGTCTCTT
CGAGGGCATCGGAGTCCGCTTACCGTTTTGCGTTCGAGGCTATCAGCGTC
GCCAAATTCAACGCTCACGACTTCACGACGGCGTCCGATCAGAGCCTCAG
CGGCCTGTTCCCGTTAGCATCGCTGGCATGCCACTCCTGCGACGCTAATT
GCACGTTCACCACCATGAGCCCTAGCGGGGTTATCAGCTACTACGCGGCG
CGGAGAATCTCAGAGGGTGACTCTATATCAATTCTTTACGATGGCCGCAA
CGCGGGCATGCCGACGCTGCAACGTTGGAAGCTGATGGCGAAAGGCAGGG
ACTTCATGTGTCAGTGCTTGCGATGCACCGGGCCCGATGCAATGAGCGGC
ATCAAGTGTCATCGGTGCCAAGAGGGAGTCTCCATGCCGACGTTCCCCCG
CCTGCTGCCAAGCACACGCGAGCTCCCAACGATCGCCGATGCTACATGGC
TCTGCGACACCTGCGGGTGCGCTCCGGAGCCATCGATGCTCGCAAAGCAG
CTGACAGAAGTGTCTGACCTCACGACCCAGCTCTTGAACGTGGTCGGAAG
CAACAGGTGA
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protein sequence of jgi.p|Trimin1|166663

>Trimin1|166663|e_gw1.46.113.1 ID=Trimin1|166663|e_gw1.46.113.1|Name=jgi.p|Trimin1|166663|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=270bp
MGRVLRATRAFAPGDLVLREAPLLVFVDDDGGHDLVAKALKLSEEERLKL
LDMYHLRPGDDPRFAIASYVTEKIEKKVRSVVSSRASESAYRFAFEAISV
AKFNAHDFTTASDQSLSGLFPLASLACHSCDANCTFTTMSPSGVISYYAA
RRISEGDSISILYDGRNAGMPTLQRWKLMAKGRDFMCQCLRCTGPDAMSG
IKCHRCQEGVSMPTFPRLLPSTRELPTIADATWLCDTCGCAPEPSMLAKQ
LTEVSDLTTQLLNVVGSNR*
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mRNA from alignment at Contig_46:438831..439640+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4617 ID=mRNA_4617|Name=jgi.p|Trimin1|166663|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=810bp|location=Sequence derived from alignment at Contig_46:438831..439640+ (Tribonema minus UTEX_B_3156 )
ATGGGCCGTGTGCTGCGGGCAACGAGAGCTTTCGCCCCTGGCGATCTAGT GCTGAGGGAGGCTCCTCTGCTCGTCTTTGTCGACGACGACGGAGGGCACG ATCTCGTCGCCAAGGCCCTGAAGCTGTCCGAAGAGGAGAGACTGAAGCTC CTGGACATGTATCACTTGCGACCCGGCGACGATCCTCGCTTTGCAATTGC CAGCTATGTGACCGAGAAAATTGAGAAAAAGGTGCGTAGTGTAGTCTCTT CGAGGGCATCGGAGTCCGCTTACCGTTTTGCGTTCGAGGCTATCAGCGTC GCCAAATTCAACGCTCACGACTTCACGACGGCGTCCGATCAGAGCCTCAG CGGCCTGTTCCCGTTAGCATCGCTGGCATGCCACTCCTGCGACGCTAATT GCACGTTCACCACCATGAGCCCTAGCGGGGTTATCAGCTACTACGCGGCG CGGAGAATCTCAGAGGGTGACTCTATATCAATTCTTTACGATGGCCGCAA CGCGGGCATGCCGACGCTGCAACGTTGGAAGCTGATGGCGAAAGGCAGGG ACTTCATGTGTCAGTGCTTGCGATGCACCGGGCCCGATGCAATGAGCGGC ATCAAGTGTCATCGGTGCCAAGAGGGAGTCTCCATGCCGACGTTCCCCCG CCTGCTGCCAAGCACACGCGAGCTCCCAACGATCGCCGATGCTACATGGC TCTGCGACACCTGCGGGTGCGCTCCGGAGCCATCGATGCTCGCAAAGCAG CTGACAGAAGTGTCTGACCTCACGACCCAGCTCTTGAACGTGGTCGGAAG CAACAGGTGA
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Coding sequence (CDS) from alignment at Contig_46:438831..439640+

>mRNA_4617 ID=mRNA_4617|Name=jgi.p|Trimin1|166663|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=810bp|location=Sequence derived from alignment at Contig_46:438831..439640+ (Tribonema minus UTEX_B_3156 )
ATGGGCCGTGTGCTGCGGGCAACGAGAGCTTTCGCCCCTGGCGATCTAGT
GCTGAGGGAGGCTCCTCTGCTCGTCTTTGTCGACGACGACGGAGGGCACG
ATCTCGTCGCCAAGGCCCTGAAGCTGTCCGAAGAGGAGAGACTGAAGCTC
CTGGACATGTATCACTTGCGACCCGGCGACGATCCTCGCTTTGCAATTGC
CAGCTATGTGACCGAGAAAATTGAGAAAAAGGTGCGTAGTGTAGTCTCTT
CGAGGGCATCGGAGTCCGCTTACCGTTTTGCGTTCGAGGCTATCAGCGTC
GCCAAATTCAACGCTCACGACTTCACGACGGCGTCCGATCAGAGCCTCAG
CGGCCTGTTCCCGTTAGCATCGCTGGCATGCCACTCCTGCGACGCTAATT
GCACGTTCACCACCATGAGCCCTAGCGGGGTTATCAGCTACTACGCGGCG
CGGAGAATCTCAGAGGGTGACTCTATATCAATTCTTTACGATGGCCGCAA
CGCGGGCATGCCGACGCTGCAACGTTGGAAGCTGATGGCGAAAGGCAGGG
ACTTCATGTGTCAGTGCTTGCGATGCACCGGGCCCGATGCAATGAGCGGC
ATCAAGTGTCATCGGTGCCAAGAGGGAGTCTCCATGCCGACGTTCCCCCG
CCTGCTGCCAAGCACACGCGAGCTCCCAACGATCGCCGATGCTACATGGC
TCTGCGACACCTGCGGGTGCGCTCCGGAGCCATCGATGCTCGCAAAGCAG
CTGACAGAAGTGTCTGACCTCACGACCCAGCTCTTGAACGTGGTCGGAAG
CAACAGGTGA
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