mRNA_4607 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|146552 vs. uniprot
Match: A0A836CC94_9STRA (Glycoside hydrolase superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC94_9STRA) HSP 1 Score: 533 bits (1374), Expect = 7.030e-192 Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 1 Query: 1 VKRTTYVGARFSGDETPFLMQQKWNVQFSVITVYRPIESVGYQYIRTDGKKLQLVTEMYKSIHEIANGCYDDAVRRLAKDIAKKGDTVWIRMLHEFNSNTYVWGLYPFSDESIRTFKKAWQRIVKIYREENAPVKFQLCFLGSNTHGDKTPFIAFNPGSSFVDQVGVDVYVNAGSKMVSLQERLDSGIYDALLQFGKPIFIGEVGVTPAIGDRAQWIKDAWKSLAVDFTRVIAVSFFLECKSVTRQWCLTNQEEINAFV 777 VKRTTYVGARFSGDETPFLMQQKWNVQFSVITVYRPIESVGYQYIRTDGKKLQLVTEMYKSIHEIANGCYDDAVRRLAKDIAKKGDTVWIRMLHEFNSNTYVWGLYPFSDESIRTFKKAWQRIVKIYREENAPVKFQLCFLGSNTHGDKTPFIAFNPGSSFVDQVGVDVYVNAGSKMVSLQERLDSGIYDALLQFGKPIFIGEVGVTPAIGDRAQWIKDAWKSLAVDFTRVIAVSFFLECKSVTRQWCLTNQEEINAFV Sbjct: 1 VKRTTYVGARFSGDETPFLMQQKWNVQFSVITVYRPIESVGYQYIRTDGKKLQLVTEMYKSIHEIANGCYDDAVRRLAKDIAKKGDTVWIRMLHEFNSNTYVWGLYPFSDESIRTFKKAWQRIVKIYREENAPVKFQLCFLGSNTHGDKTPFIAFNPGSSFVDQVGVDVYVNAGSKMVSLQERLDSGIYDALLQFGKPIFIGEVGVTPAIGDRAQWIKDAWKSLAVDFTRVIAVSFFLECKSVTRQWCLTNQEEINAFV 259
BLAST of jgi.p|Trimin1|146552 vs. uniprot
Match: A0A835YSC6_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSC6_9STRA) HSP 1 Score: 385 bits (988), Expect = 3.480e-133 Identity = 176/240 (73.33%), Postives = 209/240 (87.08%), Query Frame = 1 Query: 58 MQQKWNVQFSVITVYRPIESVGYQYIRTDGKKLQLVTEMYKSIHEIANGCYDDAVRRLAKDIAKKGDTVWIRMLHEFNSNTYVWGLYPFSDESIRTFKKAWQRIVKIYREENAPVKFQLCFLGSNTHGDKTPFIAFNPGSSFVDQVGVDVYVNAGSKMVSLQERLDSGIYDALLQFGKPIFIGEVGVTPAIGDRAQWIKDAWKSLAVDFTRVIAVSFFLECKSVTRQWCLTNQEEINAFV 777 MQ++WNVQFSV+TVYRPIESVGY+YIRTDGK LQLVTEM KSI +IANGCYD VR+LA+DIA+KGDTVWIRMLHEFNS+TYVWGLYPF+ + IR FK+AW+RIV IY ++ APV+FQLCFLG+N+ GDKTPF AFNPG ++VDQVGVDVY+N SK+VSL+ERLD+GIYD LL F KPIF GE+G TPAIGDR +W++DAW+SLA+DF +V AVS+FLEC+ R WCLT Q EIN FV Sbjct: 1 MQREWNVQFSVLTVYRPIESVGYEYIRTDGKVLQLVTEMSKSIQDIANGCYDTEVRKLARDIARKGDTVWIRMLHEFNSDTYVWGLYPFTTDKIRAFKRAWRRIVNIYCDQGAPVQFQLCFLGTNSSGDKTPFSAFNPGRNYVDQVGVDVYINTNSKLVSLKERLDNGIYDQLLWFNKPIFFGEIGCTPAIGDRGKWMRDAWRSLALDFPQVKAVSYFLECEGPQRPWCLTKQSEINGFV 240
BLAST of jgi.p|Trimin1|146552 vs. uniprot
Match: A0A836CH71_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH71_9STRA) HSP 1 Score: 362 bits (928), Expect = 1.350e-122 Identity = 177/262 (67.56%), Postives = 208/262 (79.39%), Query Frame = 1 Query: 1 VKRTTYVGARFSGDETPFLMQQKWNVQFSVITVYRPIESVGYQYIRTDGKKLQLVTEMYKSIHEIANGCYDDAVRRLAKDIAKKGDTVWIRMLHEFNS-NTYVWGLYPFSDESIRTFKKAWQRIVKIYREENAPVKFQLCFLGSNTHGDK--TPFIAFNPGSSFVDQVGVDVYVNAGSKMVSLQERLDSGIYDALLQFGKPIFIGEVGVTPAIGDRAQWIKDAWKSLAVDFTRVIAVSFFLECKSVTRQWCLTNQEEINAFV 777 V+R TYVGARF+GD+T F MQ++W+VQF+ ITVYRPI+SVGY+ IRT+GKKLQLVTEM++SI +IA+GCYDD VR LA+ IA KG VWIR LHEFNS NTY W LYPF+D I TFK+AW+RIV IYREE APVKFQLCF+ N GDK TPF AFNPG +VD VGVDVYVNA M SL+E+L+ GIY+ LL FGKPIFIGE+ VT I DR QWI DAW +LA+DF R+ +S+FLECK R WCL QEEI+AFV Sbjct: 76 VQRPTYVGARFAGDDTAFEMQKEWDVQFNTITVYRPIDSVGYKSIRTEGKKLQLVTEMFRSIDDIADGCYDDEVRSLARAIADKGVNVWIRFLHEFNSENTYPWCLYPFTDAKIATFKRAWRRIVSIYREERAPVKFQLCFMAKNPGGDKDRTPFSAFNPGRDYVDAVGVDVYVNAAKHMPSLKEKLNDGIYEQLLWFGKPIFIGEMSVTTKIPDRPQWIFDAWHALALDFPRIKYISWFLECKGDKRPWCLLKQEEIDAFV 337
BLAST of jgi.p|Trimin1|146552 vs. uniprot
Match: A0A836CLT1_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLT1_9STRA) HSP 1 Score: 320 bits (820), Expect = 4.570e-106 Identity = 155/259 (59.85%), Postives = 191/259 (73.75%), Query Frame = 1 Query: 4 KRTTYVGARFSGDETPFLMQQKWNVQFSVITVYRPIESVGYQYIRTDGKKLQLVTEMYKSIHEIANGCYDDAVRRLAKDIAKKGDTVWIRMLHEFNS-NTYVWGLYPFSDESIRTFKKAWQRIVKIYREENAPVKFQLCFLGSNTHGDKTPFIAFNPGSSFVDQVGVDVYVNAGSKMVSLQERLDSGIYDALLQFGKPIFIGEVGVTPAIGDRAQWIKDAWKSLAVDFTRVIAVSFFLECKSVTRQWCLTNQEEINAFV 777 KR TY GARF+GD T F + +W V+F V+TVYRPIESVGY+YI+T+GK+LQLVTE+ S+ +IANG +D +VR+LAK IAKKG VWIR LHEFNS NTY W +YP+S I TFK+AW+ +V IYREE APV FQL ++ N H D+TPF F PG +VD VGVD+YVN GS++VSL+ RL +Y L QFGKPIFIGEV T D+A+WI DAW LAV F R+ VS+FLE K RQW L ++EI+AFV Sbjct: 80 KRKTYAGARFAGDNTVFKREHEWGVKFDVLTVYRPIESVGYEYIKTEGKQLQLVTEINGSVSDIANGRFDSSVRKLAKAIAKKGTVVWIRQLHEFNSENTYHWCVYPYSQRKIATFKRAWRHLVNIYREEKAPVLFQLTYIAQNPHNDRTPFAHFYPGREYVDHVGVDIYVNPGSRLVSLKTRLQDNVYSQLSQFGKPIFIGEVSCTDKGLDKAKWIYDAWHDLAVYFPRITIVSWFLEDKGGKRQWNLHTKKEISAFV 338
BLAST of jgi.p|Trimin1|146552 vs. uniprot
Match: A0A835ZIN4_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIN4_9STRA) HSP 1 Score: 308 bits (788), Expect = 1.890e-100 Identity = 155/265 (58.49%), Postives = 194/265 (73.21%), Query Frame = 1 Query: 1 VKRTTYVGARFSGD-ETPFLMQQKWNVQFSVITVYRPIESVGYQYIRTDGKKLQLVTEMYKSIHEIANGCYDDAVRRLAKDIAKKGDTVWIRMLHEFNSN-TYVWGLYPFSDESIRTFKKAWQRIVKIYREENAPVKFQLCFLGSNTHGDK--TPFIAFNPGSSFVDQVGVDVYVNAGSKMVSLQERLDSGIYDALLQFGKPIFIGEVGVTPAIGDRAQWIKDAWKSLAVDFTRVIAVSFFLECKSV--TRQWCLTNQEEINAFV 777 VKR T GA F G E F + + VQF +ITVYRPI+ VGY+YIRT GK LQLVTE+ K + IA+G DDAVR+LA+DIA KG+TVWIRM+HEFN TY W LYP++ E + TFK+AW+R+V +YREE APVKFQL F+ N GDK TPF AFNPG + QVGVDVYVNA +M SL+E+L+ +Y LL FGKP+FIGE+ VT ++ DR WI++AW+SLA+DF RV V++FLE KS TR W L ++ EI+AFV Sbjct: 142 VKRATKTGAWFEGGHEAVFAAEADYGVQFDLITVYRPIDDVGYEYIRTGGKTLQLVTELGKGVDAIADGACDDAVRKLARDIAAKGETVWIRMMHEFNGEKTYPWSLYPYTREKLATFKRAWRRVVSVYREERAPVKFQLAFMAKNPGGDKDRTPFSAFNPGQDYFHQVGVDVYVNAAKRMPSLKEKLNDNVYAQLLWFGKPVFIGEMSVTVSVPDRPAWIREAWRSLALDFPRVKYVNWFLEDKSPAPTRSWGLHSRAEIDAFV 406
BLAST of jgi.p|Trimin1|146552 vs. uniprot
Match: A0A836CHN7_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHN7_9STRA) HSP 1 Score: 288 bits (737), Expect = 1.040e-92 Identity = 141/234 (60.26%), Postives = 169/234 (72.22%), Query Frame = 1 Query: 19 VGARFSGDETPFLMQQKWNVQFSVITVYRPIESVGYQYIRTDGKKLQLVTEMYKSIHEIANGCYDDAVRRLAKDIAKKGDTVWIRMLHEFN-SNTYVWGLYPFSDESIRTFKKAWQRIVKIYREENAPVKFQLCFLGSNTHGDKTPFIAFNPGSSFVDQVGVDVYVNAGSKMVSLQERLDSGIYDALLQFGKPIFIGEVGVTPAIGDRAQWIKDAWKSLAVDFTRVIAVSFFLE 717 VGA D F + KWNV F VITVYRPIESVGY+YI T GK+LQ+VTEM+KS+ +IANG YD AVR+LAKDI KG TVWIR +HEFN NTY W +YPF+D I FKKAW+R+V IYREE APVKFQLC+ N + P+ PG +FVD VGVDVYVNAGSK SL+ERLD+ +Y L++F KPIFIGE+ VT D+ +W K AW LAV F ++ V+FFLE Sbjct: 32 VGAWLGSDTAVFDFEDKWNVDFDVITVYRPIESVGYKYIDTGGKQLQIVTEMFKSVDDIANGHYDGAVRKLAKDIRAKGKTVWIRFMHEFNYENTYPWCIYPFTDHKIAQFKKAWKRVVNIYREEKAPVKFQLCYQARNPTKKQKPYSQLYPGDAFVDHVGVDVYVNAGSKQ-SLKERLDNNVYSQLVKFNKPIFIGEMSVTDVGTDKPKWFKQAWHDLAVHFPKITIVNFFLE 264
BLAST of jgi.p|Trimin1|146552 vs. uniprot
Match: A0A835Z2E4_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2E4_9STRA) HSP 1 Score: 247 bits (630), Expect = 2.350e-79 Identity = 123/200 (61.50%), Postives = 151/200 (75.50%), Query Frame = 1 Query: 193 IANGCYDDAVRRLAKDIAKKGDTVWIRMLHEFNSN-TYVWGLYPFSDESIRTFKKAWQRIVKIYREENAPVKFQLCFLGSNTHGDK--TPFIAFNPGSSFVDQVGVDVYVNAGSKMVSLQERLDSGIYDALLQFGKPIFIGEVGVTPAIGDRAQWIKDAWKSLAVDFTRVIAVSFFLECKSV--TRQWCLTNQEEINAFV 777 IA+G DDAVR+LA+ IA KG+TVWIRM+HE N TY W LYP++ E + TFK+AW+R+V +YREE APVKFQL F+ N GDK TPF AFNPG + DQVGVDVYVNA +M SL+E+L+ GIY LL FGKP+FIGE+ VT ++ DR WI++AW+SLA+DF RV VS+FLE KS TR W L NQ EI+AFV Sbjct: 1 IADGACDDAVRKLARAIAAKGETVWIRMMHELNGEGTYPWSLYPYTREKLATFKRAWRRVVSVYREERAPVKFQLAFMARNPGGDKDRTPFSAFNPGRDYFDQVGVDVYVNAAKRMPSLKEKLNDGIYAQLLWFGKPVFIGEMSVTVSVPDRPAWIREAWRSLALDFPRVKYVSWFLEGKSPAPTRSWGLHNQAEIDAFV 200
BLAST of jgi.p|Trimin1|146552 vs. uniprot
Match: A0A835YZ29_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ29_9STRA) HSP 1 Score: 241 bits (615), Expect = 2.230e-71 Identity = 121/244 (49.59%), Postives = 162/244 (66.39%), Query Frame = 1 Query: 61 QQKWNVQFSVITVYRPI----ESVGYQYIRTDGKKLQLVTEMYKSIHEIANGCYDDAVRRLAKDIAKKGDTVWIRMLHEFN-SNTYVWGLYPFSDESIRTFKKAWQRIVKIYREENAPVKFQLCFLGSNTHGDKTPFIAFNPGSSFVDQVGVDVYVNAGSKMVSLQERLDSGIYDALLQFGKPIFIGEVGVTPAIGDRAQWIKDAWKSLAVDFTRVIAVSFFLECKSVTRQWCLTNQEEINAFV 777 +++W+V+F +TVYRPI +S+GY+YI+T K+LQLVTE+ S+ +I G +DDAV+ LA DI G VWIR++HEFN +TY W LYP++ I +K+AW+RIV IYR APV+FQ C +N H DKTPF AF PG VDQVGVD+Y+NAGS +VSL+ RL+ G+Y L F KPIFIGE T D+AQW+ DA + F +I+++FF E K W L ++ AFV Sbjct: 447 EEEWSVRFDTLTVYRPITSANKSLGYKYIQTGDKQLQLVTEIQGSVDDINAGKFDDAVKALATDIKAVGKEVWIRLMHEFNYESTYPWCLYPYTSPKIDAYKEAWRRIVAIYRRVGAPVQFQWCLSATNPHSDKTPFAAFYPGDDVVDQVGVDLYINAGSALVSLKTRLNKGVYAQLQAFRKPIFIGETSCTDIGLDKAQWLLDACHDVPHYFPGIISMTFFFENKGA-HMWDLNTPSQVQAFV 689
BLAST of jgi.p|Trimin1|146552 vs. uniprot
Match: A0A835YJ96_9STRA (Glycoside hydrolase superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ96_9STRA) HSP 1 Score: 224 bits (572), Expect = 8.910e-71 Identity = 110/196 (56.12%), Postives = 137/196 (69.90%), Query Frame = 1 Query: 193 IANGCYDDAVRRLAKDIAKKGDTVWIRMLHEFNS-NTYVWGLYPFSDESIRTFKKAWQRIVKIYREENAPVKFQLCFLGSNTHGDKTPFIAFNPGSSFVDQVGVDVYVNAGSKMVSLQERLDSGIYDALLQFGKPIFIGEVGVTPAIGDRAQWIKDAWKSLAVDFTRVIAVSFFLECKSVTRQWCLTNQEEINAFV 777 IANG +D VR LAK+IAKKG VWIR +HEFNS NTY W LYPF+ I TFK+A +R+V IYR+E APVKFQL F+ N H D TPF F PG +VD VGVD+YVNAGS++VSL+ RL+ +Y L QF KPIFIGE+ T D+A+WI DAW LA+ F ++ +++F E K RQW L + E+ AFV Sbjct: 1 IANGHFDSHVRDLAKEIAKKGRLVWIRQMHEFNSENTYQWCLYPFTSAKIATFKRALRRLVNIYRQEKAPVKFQLTFMAKNPHNDGTPFSQFYPGRRYVDHVGVDLYVNAGSRLVSLKVRLEDDVYSQLTQFSKPIFIGELSCTDKGLDKAKWIHDAWNDLALHFPKISIINWFFEDKGGKRQWNLHSPAEVKAFV 196
BLAST of jgi.p|Trimin1|146552 vs. uniprot
Match: A0A836CET3_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CET3_9STRA) HSP 1 Score: 224 bits (571), Expect = 1.640e-69 Identity = 116/256 (45.31%), Postives = 155/256 (60.55%), Query Frame = 1 Query: 16 YVGARFSGDETPFLMQQKWNVQFSVITVYRPIESVGYQYIRTDGKKLQLVTEMYKSIHEIANGCYDDAVRRLAKDIAKKGDTVWIRMLHEFN-SNTYVWGLYPFSDESIRTFKKAWQRIVKIYREENAPVKFQLCFLGSNTHGDKTPFIAFNPGSSFVDQVGVDVYVNAGSKMVSLQERLDSGIYDALLQFGKPIFIGEVGVTPAIGDRAQWIKDAWKSLAV-DFTRVIAVSFFLECKSVTRQWCLTNQEEINAFV 777 Y A D F +++ + F+ + VYRPI SVG+ YI T GK+LQ+VTE ++ +I +G +DD VRRL +DI G+ VWIR LHEFN + TY W + S SI FK+AW+RIV +YRE APV+FQ C N + P+ PG VD VGVD+Y+N GSK+VSL++RL G+Y L FGKP+FIGE T D+A W+++AW+ LA F + V+FFL K R W L E+ FV Sbjct: 4 YASAFCGTDAAIFDFERQRRIVFNAVQVYRPINSVGFNYIATRGKQLQIVTEFPGTLSDILDGKFDDDVRRLGRDIKAGGEEVWIRQLHEFNYAGTYPWCI-DLSPASIALFKRAWRRIVSLYREVGAPVRFQWCLQAKNPGKVQVPYSQLYPGDDAVDAVGVDLYINPGSKLVSLKQRLQDGVYSQLAAFGKPVFIGETSCTDEGLDKAGWMREAWRDLASPSFDSITTVNFFLVDKDPRRWWGLNTAAEVKGFV 258 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|146552 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_4607 ID=mRNA_4607|Name=jgi.p|Trimin1|146552|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=777bp|location=Sequence derived from alignment at Contig_46:394785..395561+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GTCAAGCGCACGACTTATGTGGGGGCCAGGTTTTCAGGCGACGAGACCCCback to top protein sequence of jgi.p|Trimin1|146552 >Trimin1|146552|gw1.46.114.1 ID=Trimin1|146552|gw1.46.114.1|Name=jgi.p|Trimin1|146552|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=259bp VKRTTYVGARFSGDETPFLMQQKWNVQFSVITVYRPIESVGYQYIRTDGKback to top mRNA from alignment at Contig_46:394785..395561+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_4607 ID=mRNA_4607|Name=jgi.p|Trimin1|146552|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=777bp|location=Sequence derived from alignment at Contig_46:394785..395561+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_46:394785..395561+ >mRNA_4607 ID=mRNA_4607|Name=jgi.p|Trimin1|146552|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=777bp|location=Sequence derived from alignment at Contig_46:394785..395561+ (Tribonema minus UTEX_B_3156 )back to top |