mRNA_4607 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|146552
Unique NamemRNA_4607
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|146552 vs. uniprot
Match: A0A836CC94_9STRA (Glycoside hydrolase superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC94_9STRA)

HSP 1 Score: 533 bits (1374), Expect = 7.030e-192
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 1
Query:    1 VKRTTYVGARFSGDETPFLMQQKWNVQFSVITVYRPIESVGYQYIRTDGKKLQLVTEMYKSIHEIANGCYDDAVRRLAKDIAKKGDTVWIRMLHEFNSNTYVWGLYPFSDESIRTFKKAWQRIVKIYREENAPVKFQLCFLGSNTHGDKTPFIAFNPGSSFVDQVGVDVYVNAGSKMVSLQERLDSGIYDALLQFGKPIFIGEVGVTPAIGDRAQWIKDAWKSLAVDFTRVIAVSFFLECKSVTRQWCLTNQEEINAFV 777
            VKRTTYVGARFSGDETPFLMQQKWNVQFSVITVYRPIESVGYQYIRTDGKKLQLVTEMYKSIHEIANGCYDDAVRRLAKDIAKKGDTVWIRMLHEFNSNTYVWGLYPFSDESIRTFKKAWQRIVKIYREENAPVKFQLCFLGSNTHGDKTPFIAFNPGSSFVDQVGVDVYVNAGSKMVSLQERLDSGIYDALLQFGKPIFIGEVGVTPAIGDRAQWIKDAWKSLAVDFTRVIAVSFFLECKSVTRQWCLTNQEEINAFV
Sbjct:    1 VKRTTYVGARFSGDETPFLMQQKWNVQFSVITVYRPIESVGYQYIRTDGKKLQLVTEMYKSIHEIANGCYDDAVRRLAKDIAKKGDTVWIRMLHEFNSNTYVWGLYPFSDESIRTFKKAWQRIVKIYREENAPVKFQLCFLGSNTHGDKTPFIAFNPGSSFVDQVGVDVYVNAGSKMVSLQERLDSGIYDALLQFGKPIFIGEVGVTPAIGDRAQWIKDAWKSLAVDFTRVIAVSFFLECKSVTRQWCLTNQEEINAFV 259          
BLAST of jgi.p|Trimin1|146552 vs. uniprot
Match: A0A835YSC6_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSC6_9STRA)

HSP 1 Score: 385 bits (988), Expect = 3.480e-133
Identity = 176/240 (73.33%), Postives = 209/240 (87.08%), Query Frame = 1
Query:   58 MQQKWNVQFSVITVYRPIESVGYQYIRTDGKKLQLVTEMYKSIHEIANGCYDDAVRRLAKDIAKKGDTVWIRMLHEFNSNTYVWGLYPFSDESIRTFKKAWQRIVKIYREENAPVKFQLCFLGSNTHGDKTPFIAFNPGSSFVDQVGVDVYVNAGSKMVSLQERLDSGIYDALLQFGKPIFIGEVGVTPAIGDRAQWIKDAWKSLAVDFTRVIAVSFFLECKSVTRQWCLTNQEEINAFV 777
            MQ++WNVQFSV+TVYRPIESVGY+YIRTDGK LQLVTEM KSI +IANGCYD  VR+LA+DIA+KGDTVWIRMLHEFNS+TYVWGLYPF+ + IR FK+AW+RIV IY ++ APV+FQLCFLG+N+ GDKTPF AFNPG ++VDQVGVDVY+N  SK+VSL+ERLD+GIYD LL F KPIF GE+G TPAIGDR +W++DAW+SLA+DF +V AVS+FLEC+   R WCLT Q EIN FV
Sbjct:    1 MQREWNVQFSVLTVYRPIESVGYEYIRTDGKVLQLVTEMSKSIQDIANGCYDTEVRKLARDIARKGDTVWIRMLHEFNSDTYVWGLYPFTTDKIRAFKRAWRRIVNIYCDQGAPVQFQLCFLGTNSSGDKTPFSAFNPGRNYVDQVGVDVYINTNSKLVSLKERLDNGIYDQLLWFNKPIFFGEIGCTPAIGDRGKWMRDAWRSLALDFPQVKAVSYFLECEGPQRPWCLTKQSEINGFV 240          
BLAST of jgi.p|Trimin1|146552 vs. uniprot
Match: A0A836CH71_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH71_9STRA)

HSP 1 Score: 362 bits (928), Expect = 1.350e-122
Identity = 177/262 (67.56%), Postives = 208/262 (79.39%), Query Frame = 1
Query:    1 VKRTTYVGARFSGDETPFLMQQKWNVQFSVITVYRPIESVGYQYIRTDGKKLQLVTEMYKSIHEIANGCYDDAVRRLAKDIAKKGDTVWIRMLHEFNS-NTYVWGLYPFSDESIRTFKKAWQRIVKIYREENAPVKFQLCFLGSNTHGDK--TPFIAFNPGSSFVDQVGVDVYVNAGSKMVSLQERLDSGIYDALLQFGKPIFIGEVGVTPAIGDRAQWIKDAWKSLAVDFTRVIAVSFFLECKSVTRQWCLTNQEEINAFV 777
            V+R TYVGARF+GD+T F MQ++W+VQF+ ITVYRPI+SVGY+ IRT+GKKLQLVTEM++SI +IA+GCYDD VR LA+ IA KG  VWIR LHEFNS NTY W LYPF+D  I TFK+AW+RIV IYREE APVKFQLCF+  N  GDK  TPF AFNPG  +VD VGVDVYVNA   M SL+E+L+ GIY+ LL FGKPIFIGE+ VT  I DR QWI DAW +LA+DF R+  +S+FLECK   R WCL  QEEI+AFV
Sbjct:   76 VQRPTYVGARFAGDDTAFEMQKEWDVQFNTITVYRPIDSVGYKSIRTEGKKLQLVTEMFRSIDDIADGCYDDEVRSLARAIADKGVNVWIRFLHEFNSENTYPWCLYPFTDAKIATFKRAWRRIVSIYREERAPVKFQLCFMAKNPGGDKDRTPFSAFNPGRDYVDAVGVDVYVNAAKHMPSLKEKLNDGIYEQLLWFGKPIFIGEMSVTTKIPDRPQWIFDAWHALALDFPRIKYISWFLECKGDKRPWCLLKQEEIDAFV 337          
BLAST of jgi.p|Trimin1|146552 vs. uniprot
Match: A0A836CLT1_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLT1_9STRA)

HSP 1 Score: 320 bits (820), Expect = 4.570e-106
Identity = 155/259 (59.85%), Postives = 191/259 (73.75%), Query Frame = 1
Query:    4 KRTTYVGARFSGDETPFLMQQKWNVQFSVITVYRPIESVGYQYIRTDGKKLQLVTEMYKSIHEIANGCYDDAVRRLAKDIAKKGDTVWIRMLHEFNS-NTYVWGLYPFSDESIRTFKKAWQRIVKIYREENAPVKFQLCFLGSNTHGDKTPFIAFNPGSSFVDQVGVDVYVNAGSKMVSLQERLDSGIYDALLQFGKPIFIGEVGVTPAIGDRAQWIKDAWKSLAVDFTRVIAVSFFLECKSVTRQWCLTNQEEINAFV 777
            KR TY GARF+GD T F  + +W V+F V+TVYRPIESVGY+YI+T+GK+LQLVTE+  S+ +IANG +D +VR+LAK IAKKG  VWIR LHEFNS NTY W +YP+S   I TFK+AW+ +V IYREE APV FQL ++  N H D+TPF  F PG  +VD VGVD+YVN GS++VSL+ RL   +Y  L QFGKPIFIGEV  T    D+A+WI DAW  LAV F R+  VS+FLE K   RQW L  ++EI+AFV
Sbjct:   80 KRKTYAGARFAGDNTVFKREHEWGVKFDVLTVYRPIESVGYEYIKTEGKQLQLVTEINGSVSDIANGRFDSSVRKLAKAIAKKGTVVWIRQLHEFNSENTYHWCVYPYSQRKIATFKRAWRHLVNIYREEKAPVLFQLTYIAQNPHNDRTPFAHFYPGREYVDHVGVDIYVNPGSRLVSLKTRLQDNVYSQLSQFGKPIFIGEVSCTDKGLDKAKWIYDAWHDLAVYFPRITIVSWFLEDKGGKRQWNLHTKKEISAFV 338          
BLAST of jgi.p|Trimin1|146552 vs. uniprot
Match: A0A835ZIN4_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIN4_9STRA)

HSP 1 Score: 308 bits (788), Expect = 1.890e-100
Identity = 155/265 (58.49%), Postives = 194/265 (73.21%), Query Frame = 1
Query:    1 VKRTTYVGARFSGD-ETPFLMQQKWNVQFSVITVYRPIESVGYQYIRTDGKKLQLVTEMYKSIHEIANGCYDDAVRRLAKDIAKKGDTVWIRMLHEFNSN-TYVWGLYPFSDESIRTFKKAWQRIVKIYREENAPVKFQLCFLGSNTHGDK--TPFIAFNPGSSFVDQVGVDVYVNAGSKMVSLQERLDSGIYDALLQFGKPIFIGEVGVTPAIGDRAQWIKDAWKSLAVDFTRVIAVSFFLECKSV--TRQWCLTNQEEINAFV 777
            VKR T  GA F G  E  F  +  + VQF +ITVYRPI+ VGY+YIRT GK LQLVTE+ K +  IA+G  DDAVR+LA+DIA KG+TVWIRM+HEFN   TY W LYP++ E + TFK+AW+R+V +YREE APVKFQL F+  N  GDK  TPF AFNPG  +  QVGVDVYVNA  +M SL+E+L+  +Y  LL FGKP+FIGE+ VT ++ DR  WI++AW+SLA+DF RV  V++FLE KS   TR W L ++ EI+AFV
Sbjct:  142 VKRATKTGAWFEGGHEAVFAAEADYGVQFDLITVYRPIDDVGYEYIRTGGKTLQLVTELGKGVDAIADGACDDAVRKLARDIAAKGETVWIRMMHEFNGEKTYPWSLYPYTREKLATFKRAWRRVVSVYREERAPVKFQLAFMAKNPGGDKDRTPFSAFNPGQDYFHQVGVDVYVNAAKRMPSLKEKLNDNVYAQLLWFGKPVFIGEMSVTVSVPDRPAWIREAWRSLALDFPRVKYVNWFLEDKSPAPTRSWGLHSRAEIDAFV 406          
BLAST of jgi.p|Trimin1|146552 vs. uniprot
Match: A0A836CHN7_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHN7_9STRA)

HSP 1 Score: 288 bits (737), Expect = 1.040e-92
Identity = 141/234 (60.26%), Postives = 169/234 (72.22%), Query Frame = 1
Query:   19 VGARFSGDETPFLMQQKWNVQFSVITVYRPIESVGYQYIRTDGKKLQLVTEMYKSIHEIANGCYDDAVRRLAKDIAKKGDTVWIRMLHEFN-SNTYVWGLYPFSDESIRTFKKAWQRIVKIYREENAPVKFQLCFLGSNTHGDKTPFIAFNPGSSFVDQVGVDVYVNAGSKMVSLQERLDSGIYDALLQFGKPIFIGEVGVTPAIGDRAQWIKDAWKSLAVDFTRVIAVSFFLE 717
            VGA    D   F  + KWNV F VITVYRPIESVGY+YI T GK+LQ+VTEM+KS+ +IANG YD AVR+LAKDI  KG TVWIR +HEFN  NTY W +YPF+D  I  FKKAW+R+V IYREE APVKFQLC+   N    + P+    PG +FVD VGVDVYVNAGSK  SL+ERLD+ +Y  L++F KPIFIGE+ VT    D+ +W K AW  LAV F ++  V+FFLE
Sbjct:   32 VGAWLGSDTAVFDFEDKWNVDFDVITVYRPIESVGYKYIDTGGKQLQIVTEMFKSVDDIANGHYDGAVRKLAKDIRAKGKTVWIRFMHEFNYENTYPWCIYPFTDHKIAQFKKAWKRVVNIYREEKAPVKFQLCYQARNPTKKQKPYSQLYPGDAFVDHVGVDVYVNAGSKQ-SLKERLDNNVYSQLVKFNKPIFIGEMSVTDVGTDKPKWFKQAWHDLAVHFPKITIVNFFLE 264          
BLAST of jgi.p|Trimin1|146552 vs. uniprot
Match: A0A835Z2E4_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2E4_9STRA)

HSP 1 Score: 247 bits (630), Expect = 2.350e-79
Identity = 123/200 (61.50%), Postives = 151/200 (75.50%), Query Frame = 1
Query:  193 IANGCYDDAVRRLAKDIAKKGDTVWIRMLHEFNSN-TYVWGLYPFSDESIRTFKKAWQRIVKIYREENAPVKFQLCFLGSNTHGDK--TPFIAFNPGSSFVDQVGVDVYVNAGSKMVSLQERLDSGIYDALLQFGKPIFIGEVGVTPAIGDRAQWIKDAWKSLAVDFTRVIAVSFFLECKSV--TRQWCLTNQEEINAFV 777
            IA+G  DDAVR+LA+ IA KG+TVWIRM+HE N   TY W LYP++ E + TFK+AW+R+V +YREE APVKFQL F+  N  GDK  TPF AFNPG  + DQVGVDVYVNA  +M SL+E+L+ GIY  LL FGKP+FIGE+ VT ++ DR  WI++AW+SLA+DF RV  VS+FLE KS   TR W L NQ EI+AFV
Sbjct:    1 IADGACDDAVRKLARAIAAKGETVWIRMMHELNGEGTYPWSLYPYTREKLATFKRAWRRVVSVYREERAPVKFQLAFMARNPGGDKDRTPFSAFNPGRDYFDQVGVDVYVNAAKRMPSLKEKLNDGIYAQLLWFGKPVFIGEMSVTVSVPDRPAWIREAWRSLALDFPRVKYVSWFLEGKSPAPTRSWGLHNQAEIDAFV 200          
BLAST of jgi.p|Trimin1|146552 vs. uniprot
Match: A0A835YZ29_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ29_9STRA)

HSP 1 Score: 241 bits (615), Expect = 2.230e-71
Identity = 121/244 (49.59%), Postives = 162/244 (66.39%), Query Frame = 1
Query:   61 QQKWNVQFSVITVYRPI----ESVGYQYIRTDGKKLQLVTEMYKSIHEIANGCYDDAVRRLAKDIAKKGDTVWIRMLHEFN-SNTYVWGLYPFSDESIRTFKKAWQRIVKIYREENAPVKFQLCFLGSNTHGDKTPFIAFNPGSSFVDQVGVDVYVNAGSKMVSLQERLDSGIYDALLQFGKPIFIGEVGVTPAIGDRAQWIKDAWKSLAVDFTRVIAVSFFLECKSVTRQWCLTNQEEINAFV 777
            +++W+V+F  +TVYRPI    +S+GY+YI+T  K+LQLVTE+  S+ +I  G +DDAV+ LA DI   G  VWIR++HEFN  +TY W LYP++   I  +K+AW+RIV IYR   APV+FQ C   +N H DKTPF AF PG   VDQVGVD+Y+NAGS +VSL+ RL+ G+Y  L  F KPIFIGE   T    D+AQW+ DA   +   F  +I+++FF E K     W L    ++ AFV
Sbjct:  447 EEEWSVRFDTLTVYRPITSANKSLGYKYIQTGDKQLQLVTEIQGSVDDINAGKFDDAVKALATDIKAVGKEVWIRLMHEFNYESTYPWCLYPYTSPKIDAYKEAWRRIVAIYRRVGAPVQFQWCLSATNPHSDKTPFAAFYPGDDVVDQVGVDLYINAGSALVSLKTRLNKGVYAQLQAFRKPIFIGETSCTDIGLDKAQWLLDACHDVPHYFPGIISMTFFFENKGA-HMWDLNTPSQVQAFV 689          
BLAST of jgi.p|Trimin1|146552 vs. uniprot
Match: A0A835YJ96_9STRA (Glycoside hydrolase superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ96_9STRA)

HSP 1 Score: 224 bits (572), Expect = 8.910e-71
Identity = 110/196 (56.12%), Postives = 137/196 (69.90%), Query Frame = 1
Query:  193 IANGCYDDAVRRLAKDIAKKGDTVWIRMLHEFNS-NTYVWGLYPFSDESIRTFKKAWQRIVKIYREENAPVKFQLCFLGSNTHGDKTPFIAFNPGSSFVDQVGVDVYVNAGSKMVSLQERLDSGIYDALLQFGKPIFIGEVGVTPAIGDRAQWIKDAWKSLAVDFTRVIAVSFFLECKSVTRQWCLTNQEEINAFV 777
            IANG +D  VR LAK+IAKKG  VWIR +HEFNS NTY W LYPF+   I TFK+A +R+V IYR+E APVKFQL F+  N H D TPF  F PG  +VD VGVD+YVNAGS++VSL+ RL+  +Y  L QF KPIFIGE+  T    D+A+WI DAW  LA+ F ++  +++F E K   RQW L +  E+ AFV
Sbjct:    1 IANGHFDSHVRDLAKEIAKKGRLVWIRQMHEFNSENTYQWCLYPFTSAKIATFKRALRRLVNIYRQEKAPVKFQLTFMAKNPHNDGTPFSQFYPGRRYVDHVGVDLYVNAGSRLVSLKVRLEDDVYSQLTQFSKPIFIGELSCTDKGLDKAKWIHDAWNDLALHFPKISIINWFFEDKGGKRQWNLHSPAEVKAFV 196          
BLAST of jgi.p|Trimin1|146552 vs. uniprot
Match: A0A836CET3_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CET3_9STRA)

HSP 1 Score: 224 bits (571), Expect = 1.640e-69
Identity = 116/256 (45.31%), Postives = 155/256 (60.55%), Query Frame = 1
Query:   16 YVGARFSGDETPFLMQQKWNVQFSVITVYRPIESVGYQYIRTDGKKLQLVTEMYKSIHEIANGCYDDAVRRLAKDIAKKGDTVWIRMLHEFN-SNTYVWGLYPFSDESIRTFKKAWQRIVKIYREENAPVKFQLCFLGSNTHGDKTPFIAFNPGSSFVDQVGVDVYVNAGSKMVSLQERLDSGIYDALLQFGKPIFIGEVGVTPAIGDRAQWIKDAWKSLAV-DFTRVIAVSFFLECKSVTRQWCLTNQEEINAFV 777
            Y  A    D   F  +++  + F+ + VYRPI SVG+ YI T GK+LQ+VTE   ++ +I +G +DD VRRL +DI   G+ VWIR LHEFN + TY W +   S  SI  FK+AW+RIV +YRE  APV+FQ C    N    + P+    PG   VD VGVD+Y+N GSK+VSL++RL  G+Y  L  FGKP+FIGE   T    D+A W+++AW+ LA   F  +  V+FFL  K   R W L    E+  FV
Sbjct:    4 YASAFCGTDAAIFDFERQRRIVFNAVQVYRPINSVGFNYIATRGKQLQIVTEFPGTLSDILDGKFDDDVRRLGRDIKAGGEEVWIRQLHEFNYAGTYPWCI-DLSPASIALFKRAWRRIVSLYREVGAPVRFQWCLQAKNPGKVQVPYSQLYPGDDAVDAVGVDLYINPGSKLVSLKQRLQDGVYSQLAAFGKPVFIGETSCTDEGLDKAGWMREAWRDLASPSFDSITTVNFFLVDKDPRRWWGLNTAAEVKGFV 258          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|146552 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CC94_9STRA7.030e-192100.00Glycoside hydrolase superfamily (Fragment) n=1 Tax... [more]
A0A835YSC6_9STRA3.480e-13373.33Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A836CH71_9STRA1.350e-12267.56Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A836CLT1_9STRA4.570e-10659.85Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A835ZIN4_9STRA1.890e-10058.49Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A836CHN7_9STRA1.040e-9260.26Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A835Z2E4_9STRA2.350e-7961.50Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A835YZ29_9STRA2.230e-7149.59Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YJ96_9STRA8.910e-7156.12Glycoside hydrolase superfamily (Fragment) n=1 Tax... [more]
A0A836CET3_9STRA1.640e-6945.31Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_46contigContig_46:394785..395561 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|146552|gw1.46.114.1
CAZyGH5,GH9
BRITEko00000,ko00001,ko01000
KEGG ReactionR06200,R11307,R11308
KEGG Pathwayko00500,ko01100,map00500,map01100
KEGG koko:K01179
EC3.2.1.4
GOsGO:0003674,GO:0003824,GO:0004553,GO:0008810,GO:0016787,GO:0016798
Preferred namecelH
DescriptionBelongs to the glycosyl hydrolase 26 family
COG categoryG
Max annot lvl186801|Clostridia
EggNOG OGsCOG4124@1|root,COG4124@2|Bacteria,1U8S3@1239|Firmicutes,24CGR@186801|Clostridia,36HBM@31979|Clostridiaceae
Evalue1.53e-22
Seed ortholog272562.CA_C2556
Hectar predicted targeting categoryother localisation
TranscriptId146874
TrackFilteredModels1
ProteinId146552
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|146552gene_4607Tribonema minus UTEX_B_3156 geneContig_46 394785..395561 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4607_1exon_4607_1Tribonema minus UTEX_B_3156 exonContig_46 394785..395561 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4607CDS_4607Tribonema minus UTEX_B_3156 CDSContig_46 394785..395561 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|146552Trimin1|146552|gw1.46.114.1Tribonema minus UTEX_B_3156 polypeptideContig_46 394785..395561 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4607 ID=mRNA_4607|Name=jgi.p|Trimin1|146552|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=777bp|location=Sequence derived from alignment at Contig_46:394785..395561+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTCAAGCGCACGACTTATGTGGGGGCCAGGTTTTCAGGCGACGAGACCCC
GTTTCTCATGCAGCAGAAATGGAACGTCCAATTCAGCGTAATCACCGTGT
ACCGCCCCATTGAGTCTGTCGGATACCAATACATTAGGACAGACGGTAAG
AAATTGCAGCTCGTGACGGAAATGTACAAGAGTATTCACGAGATTGCCAA
TGGGTGCTATGACGACGCTGTGCGCAGACTGGCTAAAGACATTGCAAAAA
AAGGCGATACTGTGTGGATAAGGATGCTGCATGAGTTCAACTCGAACACG
TACGTGTGGGGGCTCTATCCATTCAGCGACGAGAGTATACGAACATTCAA
GAAGGCGTGGCAGAGGATAGTCAAAATTTATCGAGAGGAGAACGCCCCCG
TTAAGTTCCAGCTCTGCTTCTTGGGGTCGAATACTCACGGCGACAAGACT
CCTTTCATAGCGTTCAATCCCGGAAGCTCCTTCGTCGATCAAGTCGGCGT
CGACGTTTACGTCAATGCGGGTTCAAAGATGGTCTCACTCCAAGAGCGTC
TCGACTCCGGTATTTATGATGCGCTTCTGCAATTCGGCAAGCCGATATTC
ATTGGTGAAGTCGGGGTGACGCCGGCGATAGGAGACCGAGCGCAGTGGAT
TAAAGACGCTTGGAAGTCCCTGGCAGTCGACTTCACCAGAGTCATCGCGG
TCAGCTTCTTTCTCGAATGCAAGTCCGTCACACGACAATGGTGTCTGACG
AATCAAGAGGAAATCAATGCCTTCGTT
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protein sequence of jgi.p|Trimin1|146552

>Trimin1|146552|gw1.46.114.1 ID=Trimin1|146552|gw1.46.114.1|Name=jgi.p|Trimin1|146552|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=259bp
VKRTTYVGARFSGDETPFLMQQKWNVQFSVITVYRPIESVGYQYIRTDGK
KLQLVTEMYKSIHEIANGCYDDAVRRLAKDIAKKGDTVWIRMLHEFNSNT
YVWGLYPFSDESIRTFKKAWQRIVKIYREENAPVKFQLCFLGSNTHGDKT
PFIAFNPGSSFVDQVGVDVYVNAGSKMVSLQERLDSGIYDALLQFGKPIF
IGEVGVTPAIGDRAQWIKDAWKSLAVDFTRVIAVSFFLECKSVTRQWCLT
NQEEINAFV
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mRNA from alignment at Contig_46:394785..395561+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4607 ID=mRNA_4607|Name=jgi.p|Trimin1|146552|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=777bp|location=Sequence derived from alignment at Contig_46:394785..395561+ (Tribonema minus UTEX_B_3156 )
GTCAAGCGCACGACTTATGTGGGGGCCAGGTTTTCAGGCGACGAGACCCC GTTTCTCATGCAGCAGAAATGGAACGTCCAATTCAGCGTAATCACCGTGT ACCGCCCCATTGAGTCTGTCGGATACCAATACATTAGGACAGACGGTAAG AAATTGCAGCTCGTGACGGAAATGTACAAGAGTATTCACGAGATTGCCAA TGGGTGCTATGACGACGCTGTGCGCAGACTGGCTAAAGACATTGCAAAAA AAGGCGATACTGTGTGGATAAGGATGCTGCATGAGTTCAACTCGAACACG TACGTGTGGGGGCTCTATCCATTCAGCGACGAGAGTATACGAACATTCAA GAAGGCGTGGCAGAGGATAGTCAAAATTTATCGAGAGGAGAACGCCCCCG TTAAGTTCCAGCTCTGCTTCTTGGGGTCGAATACTCACGGCGACAAGACT CCTTTCATAGCGTTCAATCCCGGAAGCTCCTTCGTCGATCAAGTCGGCGT CGACGTTTACGTCAATGCGGGTTCAAAGATGGTCTCACTCCAAGAGCGTC TCGACTCCGGTATTTATGATGCGCTTCTGCAATTCGGCAAGCCGATATTC ATTGGTGAAGTCGGGGTGACGCCGGCGATAGGAGACCGAGCGCAGTGGAT TAAAGACGCTTGGAAGTCCCTGGCAGTCGACTTCACCAGAGTCATCGCGG TCAGCTTCTTTCTCGAATGCAAGTCCGTCACACGACAATGGTGTCTGACG AATCAAGAGGAAATCAATGCCTTCGTT
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Coding sequence (CDS) from alignment at Contig_46:394785..395561+

>mRNA_4607 ID=mRNA_4607|Name=jgi.p|Trimin1|146552|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=777bp|location=Sequence derived from alignment at Contig_46:394785..395561+ (Tribonema minus UTEX_B_3156 )
GTCAAGCGCACGACTTATGTGGGGGCCAGGTTTTCAGGCGACGAGACCCC
GTTTCTCATGCAGCAGAAATGGAACGTCCAATTCAGCGTAATCACCGTGT
ACCGCCCCATTGAGTCTGTCGGATACCAATACATTAGGACAGACGGTAAG
AAATTGCAGCTCGTGACGGAAATGTACAAGAGTATTCACGAGATTGCCAA
TGGGTGCTATGACGACGCTGTGCGCAGACTGGCTAAAGACATTGCAAAAA
AAGGCGATACTGTGTGGATAAGGATGCTGCATGAGTTCAACTCGAACACG
TACGTGTGGGGGCTCTATCCATTCAGCGACGAGAGTATACGAACATTCAA
GAAGGCGTGGCAGAGGATAGTCAAAATTTATCGAGAGGAGAACGCCCCCG
TTAAGTTCCAGCTCTGCTTCTTGGGGTCGAATACTCACGGCGACAAGACT
CCTTTCATAGCGTTCAATCCCGGAAGCTCCTTCGTCGATCAAGTCGGCGT
CGACGTTTACGTCAATGCGGGTTCAAAGATGGTCTCACTCCAAGAGCGTC
TCGACTCCGGTATTTATGATGCGCTTCTGCAATTCGGCAAGCCGATATTC
ATTGGTGAAGTCGGGGTGACGCCGGCGATAGGAGACCGAGCGCAGTGGAT
TAAAGACGCTTGGAAGTCCCTGGCAGTCGACTTCACCAGAGTCATCGCGG
TCAGCTTCTTTCTCGAATGCAAGTCCGTCACACGACAATGGTGTCTGACG
AATCAAGAGGAAATCAATGCCTTCGTT
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