mRNA_4606 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|140664
Unique NamemRNA_4606
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|140664 vs. uniprot
Match: A0A836CDS6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDS6_9STRA)

HSP 1 Score: 218 bits (556), Expect = 2.090e-72
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1 
Query:    1 WQQLHTVGDGPCARSGQGAVVVNDFVYVFGGCDGEAVLKDIHAFDIHTSEWRKITHQLGPSARTSFGMCIGPGDDDFTVACGCTLINPGALADIWSFNV 297
            WQQLHTVGDGPCARSGQGAVVVNDFVYVFGGCDGEAVLKDIHAFDIHTSEWRKITHQLGPSARTSFGMCIGPGDDDFTVACGCTLINPGALADIWSFNV
Sbjct:    1 WQQLHTVGDGPCARSGQGAVVVNDFVYVFGGCDGEAVLKDIHAFDIHTSEWRKITHQLGPSARTSFGMCIGPGDDDFTVACGCTLINPGALADIWSFNV 99
[Close]
BLAST of jgi.p|Trimin1|140664 vs. uniprot
Match: A0A835YN69_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN69_9STRA)

HSP 1 Score: 177 bits (450), Expect = 1.020e-52
Identity = 80/99 (80.81%), Postives = 88/99 (88.89%), Query Frame = 1 
Query:    1 WQQLHTVGDGPCARSGQGAVVVNDFVYVFGGCDGEAVLKDIHAFDIHTSEWRKITHQLGPSARTSFGMCIGPGDDDFTVACGCTLINPGALADIWSFNV 297
            W+QL+TVGD PCARSGQGAVVV+D VY+FGGCDGEAV  DI AF IHTSEW+KITHQLGPSARTSFG+C+GPG +D TVACGC L  PGALADIWSFNV
Sbjct:   16 WRQLNTVGDAPCARSGQGAVVVDDVVYIFGGCDGEAVSNDIRAFYIHTSEWQKITHQLGPSARTSFGICLGPGVEDVTVACGCNLDTPGALADIWSFNV 114
[Close]
BLAST of jgi.p|Trimin1|140664 vs. uniprot
Match: A0A835YQY7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQY7_9STRA)

HSP 1 Score: 125 bits (313), Expect = 3.860e-35
Identity = 54/98 (55.10%), Postives = 66/98 (67.35%), Query Frame = 1 
Query:    1 WQQLHTVGDGPCARSGQGAVVVNDFVYVFGGCDGEAVLKDIHAFDIHTSEWRKITHQLGPSARTSFGMCIGPGDDDFTVACGCTLINPGALADIWSFN 294
            W  LHT GD PCARSGQ +VVV D +YVFGGCDG  V  D+H FD  T EW  I  + GP+ R +FGMC GPG +DFT+ACG       A +D+WS++
Sbjct:    1 WLHLHTFGDRPCARSGQSSVVVKDKIYVFGGCDGVIVYNDLHCFDTATHEWSVIHSEGGPTPRAAFGMCAGPGAEDFTIACGSNTQYMSAYSDVWSYD 98
[Close]
BLAST of jgi.p|Trimin1|140664 vs. uniprot
Match: A0A836C6J2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6J2_9STRA)

HSP 1 Score: 126 bits (317), Expect = 1.660e-34
Identity = 56/99 (56.57%), Postives = 69/99 (69.70%), Query Frame = 1 
Query:    1 WQQLHTVGDGPCARSGQGAVVVNDFVYVFGGCDGEAVLKDIHAFDIHTSEWRKITHQLGPSARTSFGMCIGPGDDDFTVACGCTLINPGALADIWSFNV 297
            W QL T G  P + SGQGA VV++ VY+FGGCDGE  L D+H FD+ T++W  I  Q GPS R +FGMC GPG+  FTVACGC +    AL D+WSF+V
Sbjct:    2 WSQLRTCGKVPSSLSGQGAAVVDERVYMFGGCDGEVALNDVHCFDVQTNKWCAIVCQEGPSPRAAFGMCSGPGEYAFTVACGCGIEQMSALGDMWSFDV 100
[Close]
BLAST of jgi.p|Trimin1|140664 vs. uniprot
Match: A0A835Z6E7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6E7_9STRA)

HSP 1 Score: 123 bits (309), Expect = 9.620e-33
Identity = 53/98 (54.08%), Postives = 66/98 (67.35%), Query Frame = 1 
Query:    1 WQQLHTVGDGPCARSGQGAVVVNDFVYVFGGCDGEAVLKDIHAFDIHTSEWRKITHQLGPSARTSFGMCIGPGDDDFTVACGCTLINPGALADIWSFN 294
            W  L+T G+ PCARSG  AV+V   +YVFGGCDG+ V  D+H FD  T EWR I  +  P+ R +FGMC GPGD+DFT+ACG       A +D+WSFN
Sbjct:   13 WVLLNTFGNPPCARSGHAAVIVRGKIYVFGGCDGDVVYNDLHCFDTVTHEWRVIMSEGAPTPRAAFGMCAGPGDEDFTIACGSNTQFMSAYSDVWSFN 110
[Close]
BLAST of jgi.p|Trimin1|140664 vs. uniprot
Match: A0A835Z6H5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6H5_9STRA)

HSP 1 Score: 125 bits (314), Expect = 1.130e-32
Identity = 56/98 (57.14%), Postives = 66/98 (67.35%), Query Frame = 1 
Query:    1 WQQLHTVGDGPCARSGQGAVVVNDFVYVFGGCDGEAVLKDIHAFDIHTSEWRKITHQLGPSARTSFGMCIGPGDDDFTVACGCTLINPGALADIWSFN 294
            W  L+T GD PCARSG  AVVV   +YVFGGCDG AV  D+H FD  T EW  I  + GP+ R +FGMC GPG++DFT+ACG    +  A ADIW FN
Sbjct:   13 WLHLNTFGDRPCARSGHSAVVVGGKIYVFGGCDGVAVYNDLHRFDTVTHEWSVIHAEGGPTPRAAFGMCAGPGEEDFTIACGSNTQHMSAFADIWRFN 110
[Close]
BLAST of jgi.p|Trimin1|140664 vs. uniprot
Match: A0A835YYR4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYR4_9STRA)

HSP 1 Score: 119 bits (298), Expect = 1.890e-32
Identity = 53/98 (54.08%), Postives = 64/98 (65.31%), Query Frame = 1 
Query:    1 WQQLHTVGDGPCARSGQGAVVVNDFVYVFGGCDGEAVLKDIHAFDIHTSEWRKITHQLGPSARTSFGMCIGPGDDDFTVACGCTLINPGALADIWSFN 294
            W  L T GD PCARSGQ AV+V D +YVFGGCDG  V  D+H  D  T EW  I  + GP+ R +FGMC GPG +DFT+ACG       A +DIWS++
Sbjct:   13 WVHLGTYGDRPCARSGQSAVLVRDKIYVFGGCDGVVVYNDLHCLDTVTHEWSVIHSKGGPTPRAAFGMCAGPGAEDFTIACGSNTQYMSAFSDIWSYD 110
[Close]
BLAST of jgi.p|Trimin1|140664 vs. uniprot
Match: A0A835ZA21_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA21_9STRA)

HSP 1 Score: 124 bits (311), Expect = 3.400e-32
Identity = 56/98 (57.14%), Postives = 65/98 (66.33%), Query Frame = 1 
Query:    1 WQQLHTVGDGPCARSGQGAVVVNDFVYVFGGCDGEAVLKDIHAFDIHTSEWRKITHQLGPSARTSFGMCIGPGDDDFTVACGCTLINPGALADIWSFN 294
            W  L+T GD PCARSG  AVVV   +YVFGGCDG  V  D+H FD  T EW  I  + GP+ R +FGMC GPG+DDFT+ACG       A +DIWSFN
Sbjct:   13 WVLLNTFGDPPCARSGHAAVVVRGKIYVFGGCDGVVVYNDLHWFDTATHEWSAIHSEGGPTPRAAFGMCAGPGEDDFTIACGSDTQYMSAFSDIWSFN 110
[Close]
BLAST of jgi.p|Trimin1|140664 vs. uniprot
Match: A0A835Z2J9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2J9_9STRA)

HSP 1 Score: 122 bits (305), Expect = 6.700e-31
Identity = 52/90 (57.78%), Postives = 64/90 (71.11%), Query Frame = 1 
Query:   25 DGPCARSGQGAVVVNDFVYVFGGCDGEAVLKDIHAFDIHTSEWRKITHQLGPSARTSFGMCIGPGDDDFTVACGCTLINPGALADIWSFN 294
            D PCARSGQ AV+V D +YVFGGCDG  V  D+H FD  T EWR +  + GP+ R +FGMC+GPGD+DFT+ACG       A +D+WSFN
Sbjct:   85 DRPCARSGQSAVLVGDKIYVFGGCDGVVVYNDLHCFDTVTHEWRVVHSEGGPTPRAAFGMCVGPGDEDFTIACGSNTQFMSAYSDVWSFN 174
[Close]
BLAST of jgi.p|Trimin1|140664 vs. uniprot
Match: A0A836CD99_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD99_9STRA)

HSP 1 Score: 116 bits (290), Expect = 3.750e-29
Identity = 56/99 (56.57%), Postives = 65/99 (65.66%), Query Frame = 1 
Query:    1 WQQLHTVGDGPCARSGQGAVVVNDFVYVFGGCDGEAVLKDIHAFDIHTSEWRKITHQLGPSARTSFGMCIGPGDDDFTVACGCTLINPGALADIWSFNV 297
            W +L T GD P  RSGQGA VV   VY+FGGCD   +  DI+ FD+ T EW  +T   GPS R +FGMC GPG  DFTVACGC L    A +DIWSF+V
Sbjct:   13 WLRLRTFGDVPTLRSGQGAAVVAGSVYIFGGCDA-VMQNDIYRFDVDTHEWCAVTCDDGPSPRAAFGMCSGPGQYDFTVACGCGLGERSAQSDIWSFDV 110
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|140664 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A836CDS6_9STRA2.090e-72100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835YN69_9STRA1.020e-5280.81Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YQY7_9STRA3.860e-3555.10Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836C6J2_9STRA1.660e-3456.57Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z6E7_9STRA9.620e-3354.08Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z6H5_9STRA1.130e-3257.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YYR4_9STRA1.890e-3254.08Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZA21_9STRA3.400e-3257.14Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835Z2J9_9STRA6.700e-3157.78Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CD99_9STRA3.750e-2956.57Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_46contigContig_46:393251..393547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|140664|gw1.46.75.1
DescriptionKelch motif family protein. Source PGD
COG categoryS
Max annot lvl121069|Pythiales
EggNOG OGsKOG0379@1|root,KOG0379@2759|Eukaryota,1MGE6@121069|Pythiales
Evalue2.95e-08
Seed ortholog65071.PYU1_T014212
Hectar predicted targeting categoryother localisation
TranscriptId140986
TrackFilteredModels1
ProteinId140664
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|140664gene_4606Tribonema minus UTEX_B_3156 geneContig_46 393251..393547 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4606_1exon_4606_1Tribonema minus UTEX_B_3156 exonContig_46 393251..393547 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4606CDS_4606Tribonema minus UTEX_B_3156 CDSContig_46 393251..393547 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|140664Trimin1|140664|gw1.46.75.1Tribonema minus UTEX_B_3156 polypeptideContig_46 393251..393547 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4606 ID=mRNA_4606|Name=jgi.p|Trimin1|140664|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=297bp|location=Sequence derived from alignment at Contig_46:393251..393547+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGGCAGCAGCTGCACACGGTAGGCGATGGGCCCTGTGCGCGCAGCGGACA
AGGCGCCGTCGTGGTGAACGACTTTGTCTATGTTTTCGGGGGATGTGACG
GTGAAGCAGTGTTGAAAGATATTCATGCTTTCGATATTCACACTAGCGAG
TGGCGAAAAATTACACATCAGTTAGGACCATCTGCGCGCACGTCATTCGG
AATGTGCATAGGACCGGGAGACGATGACTTTACTGTTGCTTGCGGATGTA
CACTGATTAACCCAGGTGCGCTCGCTGACATTTGGTCGTTCAACGTC
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protein sequence of jgi.p|Trimin1|140664

>Trimin1|140664|gw1.46.75.1 ID=Trimin1|140664|gw1.46.75.1|Name=jgi.p|Trimin1|140664|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=99bp
WQQLHTVGDGPCARSGQGAVVVNDFVYVFGGCDGEAVLKDIHAFDIHTSE
WRKITHQLGPSARTSFGMCIGPGDDDFTVACGCTLINPGALADIWSFNV
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mRNA from alignment at Contig_46:393251..393547+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4606 ID=mRNA_4606|Name=jgi.p|Trimin1|140664|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=297bp|location=Sequence derived from alignment at Contig_46:393251..393547+ (Tribonema minus UTEX_B_3156 )
TGGCAGCAGCTGCACACGGTAGGCGATGGGCCCTGTGCGCGCAGCGGACA
AGGCGCCGTCGTGGTGAACGACTTTGTCTATGTTTTCGGGGGATGTGACG
GTGAAGCAGTGTTGAAAGATATTCATGCTTTCGATATTCACACTAGCGAG
TGGCGAAAAATTACACATCAGTTAGGACCATCTGCGCGCACGTCATTCGG
AATGTGCATAGGACCGGGAGACGATGACTTTACTGTTGCTTGCGGATGTA
CACTGATTAACCCAGGTGCGCTCGCTGACATTTGGTCGTTCAACGTC
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Coding sequence (CDS) from alignment at Contig_46:393251..393547+

>mRNA_4606 ID=mRNA_4606|Name=jgi.p|Trimin1|140664|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=297bp|location=Sequence derived from alignment at Contig_46:393251..393547+ (Tribonema minus UTEX_B_3156 )
TGGCAGCAGCTGCACACGGTAGGCGATGGGCCCTGTGCGCGCAGCGGACA
AGGCGCCGTCGTGGTGAACGACTTTGTCTATGTTTTCGGGGGATGTGACG
GTGAAGCAGTGTTGAAAGATATTCATGCTTTCGATATTCACACTAGCGAG
TGGCGAAAAATTACACATCAGTTAGGACCATCTGCGCGCACGTCATTCGG
AATGTGCATAGGACCGGGAGACGATGACTTTACTGTTGCTTGCGGATGTA
CACTGATTAACCCAGGTGCGCTCGCTGACATTTGGTCGTTCAACGTC
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