mRNA_4555 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|349598
Unique NamemRNA_4555
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|349598 vs. uniprot
Match: A0A835YUC4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUC4_9STRA)

HSP 1 Score: 213 bits (541), Expect = 2.090e-65
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 1
Query:    1 MADGQPVAVDAGSEDNASGAGAEEPGCSTDDTKTDLEAENEAYLRDKPEVMALIRLFMTTVLEQRPADPRAFAAEFFGRDTVLERARERGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTSGDGLPRLREEERDGARQCRRPPDPSSPT 537
            MADGQPVAVDAGSEDNASGAGAEEPGCSTDDTKTDLEAENEAYLRDKPEVMALIRLFMTTVLEQRPADPRAFAAEFFGRDTVLERARERGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTSGDGLPRLREEERDGARQCRRPPDPSSPT
Sbjct:    1 MADGQPVAVDAGSEDNASGAGAEEPGCSTDDTKTDLEAENEAYLRDKPEVMALIRLFMTTVLEQRPADPRAFAAEFFGRDTVLERARERGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTSGDGLPRLREEERDGARQCRRPPDPSSPT 179          
BLAST of jgi.p|Trimin1|349598 vs. uniprot
Match: A0A835YTI8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTI8_9STRA)

HSP 1 Score: 737 bits (1903), Expect = 8.500e-266
Identity = 376/376 (100.00%), Postives = 376/376 (100.00%), Query Frame = 1
Query:    1 MRRVFTSMAGRRLLPKEGWSLNRVIHDTAAPTVKARVEADTVLFAIQHRLLEDTSRRFILDLIMEGDFTRIQERPLSLPPSLVRLELNGFRGLRELELLEFPQLDEVPPGLRVLKLHTYEHPLPPLPDTLETLVLDNCTHHVVDVPDSVRSLSLYWRPPEPAPPLPARWPPHLERLAYWARCEDAALELNGCVVHTCLPQNLREMRLGSEFTQRLTFTGRVTLMNSKSAAVDNSKRRKTPAPVTPGVADGNISGFRHAADSSPDLELERRLRETEKEFNEVLRRSAELEKCITQGVPPPEVPQLLARLATLIAALDKLQAERVDAIVPQTGRHSEGVSETARKRRRSMNATLQERRAWLEQALDAARAYAKAGAAV 1128
            MRRVFTSMAGRRLLPKEGWSLNRVIHDTAAPTVKARVEADTVLFAIQHRLLEDTSRRFILDLIMEGDFTRIQERPLSLPPSLVRLELNGFRGLRELELLEFPQLDEVPPGLRVLKLHTYEHPLPPLPDTLETLVLDNCTHHVVDVPDSVRSLSLYWRPPEPAPPLPARWPPHLERLAYWARCEDAALELNGCVVHTCLPQNLREMRLGSEFTQRLTFTGRVTLMNSKSAAVDNSKRRKTPAPVTPGVADGNISGFRHAADSSPDLELERRLRETEKEFNEVLRRSAELEKCITQGVPPPEVPQLLARLATLIAALDKLQAERVDAIVPQTGRHSEGVSETARKRRRSMNATLQERRAWLEQALDAARAYAKAGAAV
Sbjct:    1 MRRVFTSMAGRRLLPKEGWSLNRVIHDTAAPTVKARVEADTVLFAIQHRLLEDTSRRFILDLIMEGDFTRIQERPLSLPPSLVRLELNGFRGLRELELLEFPQLDEVPPGLRVLKLHTYEHPLPPLPDTLETLVLDNCTHHVVDVPDSVRSLSLYWRPPEPAPPLPARWPPHLERLAYWARCEDAALELNGCVVHTCLPQNLREMRLGSEFTQRLTFTGRVTLMNSKSAAVDNSKRRKTPAPVTPGVADGNISGFRHAADSSPDLELERRLRETEKEFNEVLRRSAELEKCITQGVPPPEVPQLLARLATLIAALDKLQAERVDAIVPQTGRHSEGVSETARKRRRSMNATLQERRAWLEQALDAARAYAKAGAAV 376          
BLAST of jgi.p|Trimin1|349598 vs. uniprot
Match: A0A835YUX2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUX2_9STRA)

HSP 1 Score: 271 bits (692), Expect = 4.750e-84
Identity = 142/241 (58.92%), Postives = 164/241 (68.05%), Query Frame = 1
Query:    1 MRRVFTSMAGRRLLPKEGWSLNRVIHDTAAPTV-----KARVEADTVLFAIQHRLLEDTSRRFILDLIMEGDFTRIQERPLSLPPSLVRLELNGFRGLRELELLEFPQLDEVPPGLRVLKLHTYEHPLPPLPDTLETLVLDNCTHHVVDVPDSVRSLSLYWRPPEPAPPLPARWPPHLERLAYWARCEDAA-------------LELNGCVVHTCLPQNLREMRLGSEFTQRLTFTGRVTL 669
            MR VFTSMAGRRLLPKEGW LNR I DTAAPTV     +A ++AD+    I H LLED++RR ++ L MEGDFT +QERPLSLPPSLV L LNGFRGLREL+L+ FPQLDE+PPGLR LKL  ++HPLPPL                       RSLSLYW PP PAPPLP RWP HLERL YWA+ + A              L LNGC VH  LP+ L+++RLG  FTQ+LTFTGRVT+
Sbjct:   19 MRMVFTSMAGRRLLPKEGWGLNRAIRDTAAPTVSVHVKRAPLKADSTSCTILHGLLEDSARRLVVKLTMEGDFTSVQERPLSLPPSLVSLYLNGFRGLRELDLVAFPQLDELPPGLRFLKLRNHDHPLPPLXXXXXXXXXXXXXXXXXXXXXXXRSLSLYWLPPNPAPPLPTRWPAHLERLMYWAKSDGAPMPVIKRLPPTLRELALNGCEVHASLPRTLQKVRLGRNFTQQLTFTGRVTV 259          
BLAST of jgi.p|Trimin1|349598 vs. uniprot
Match: A0A835YUY3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUY3_9STRA)

HSP 1 Score: 251 bits (642), Expect = 7.140e-76
Identity = 135/230 (58.70%), Postives = 155/230 (67.39%), Query Frame = 1
Query:    1 MRRVFTSMAGRRLLPKEGWSLNRVIHDTAAPTVKARVEADTVLFAIQHRLLEDTSRRFILDLIMEGDFTRIQERPLSLPPSLVRLELNGFRG--------LRELELLEF----------PQL-----------------------DEVPPGLRVLKLHTYEHPLPPLPDTLETLVLDNCTHHVVDVPDSVRSLSLYWRPPEPAPPLPARWPPHLERLAYWARCEDAALEL 567
            +R VFTSMAGRRLLP+EGWSL+R IHDTAAP VK R+EA  V  A+ H LLEDT+R+ I++L MEGDFT IQ RPLSLPPSLV+LEL GFRG        LR+L L  +          P L                       +E+PP LRVLKLH YEHPLPPLPDTLETLVLD CT H+  +P+SVRSLSLYWRPP PAPPLPARWP HLE L YW+   DA  ++
Sbjct:   89 IRIVFTSMAGRRLLPEEGWSLSRAIHDTAAPIVKVRLEAGGVPIAMAHHLLEDTARKLIVELTMEGDFTEIQARPLSLPPSLVQLELAGFRGELGPAPSGLRKLSLCAYCEDGDKIIPHPPLADINDGDAMQNLLQEMAELIRAFNELPPSLRVLKLHKYEHPLPPLPDTLETLVLDECTGHIAQLPNSVRSLSLYWRPPRPAPPLPARWPAHLEHLTYWSCALDAGSQI 318          
BLAST of jgi.p|Trimin1|349598 vs. uniprot
Match: A0A836CD10_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD10_9STRA)

HSP 1 Score: 237 bits (604), Expect = 4.840e-69
Identity = 159/393 (40.46%), Postives = 184/393 (46.82%), Query Frame = 1
Query:    1 MRRVFTSMAGRRLLPKEGWSLNRVIHDTAAPTV-----KARVEADTVLFAIQHRLLEDTSRRFILDLIMEGDFTRIQERPLSLPPSLVRLELNGFRG---------LRELEL-----------------------------------------------------------------LEFPQ---------------------------------------------------------------------LDEVPPGLRVLKLHTYEHPLPPLPDTLETLVLDNCTHHVVDVPDSVRSLSLYWRPPEPAPPLPARWPPHLERLAYWARCEDAA-------------LELNGCVVHTCLPQNLREMRLGSEFTQRLTF---TGRVTLMNSKSA 687
            MRRVFTSMAGRRLLPKEGWSLNR IHDTAAPTV     +ARV A +   A+ HRLLEDT RR ++ L+++GDFT IQERPLSLPP LVRLEL GFRG         LREL L                                                                 LE P                                                                      L ++PPGLRVLKL  Y HPLPPLPDTLETLVLD+CTHHV DV DS R LSL WRPP+P P LP+RWP  L+RL YW + + A              LELN C +H  LP+ LRE+ LG+EFTQ L F   TGR+   +++S+
Sbjct:   20 MRRVFTSMAGRRLLPKEGWSLNRAIHDTAAPTVMYRLYRARVGAGSAPLALPHRLLEDTRRRLVVQLLIDGDFTNIQERPLSLPPFLVRLELYGFRGELGPPPSGGLRELRLCATSSIATSVHHLLTDIQNGEAVTNFFRETAEVLRALLPAVRALEVHGEYEPYRCVHVRTFMPALLEVPHPNLKGLSLDGWKVHWEDLLPLLSSTVAELQLEACQCDSDAGSDRLTVPPLPEGFSSLTLRGCPGSRFQPLGDLPPGLRVLKLRCYTHPLPPLPDTLETLVLDHCTHHVDDVFDSARLLSLSWRPPQPTPSLPSRWPARLKRLVYWGKPDTAEPQRIQNLPSTLTRLELNRCELHADLPRTLRELHLGNEFTQELNFKEFTGRIHTNSTRSS 412          
BLAST of jgi.p|Trimin1|349598 vs. uniprot
Match: A0A835Z745_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z745_9STRA)

HSP 1 Score: 223 bits (567), Expect = 4.160e-61
Identity = 140/274 (51.09%), Postives = 166/274 (60.58%), Query Frame = 1
Query:   22 MAGRRLLPKEGWSLNRVIHDTAAPTVKARVEADTVLFAIQHRLLEDTSRRFILDLIMEGDFTRIQERPLSLPPSLVRLELNGFRG-----LRELEL--LEFPQLDEVPPGLRVLKLHTYEHPLPPLPDTLETLVLDNCTHHVVDVPDSVRSLSLYWRPPEPAPPLPARWPPHLERLAYWARCEDAALELNGCVVHTCLPQNLREMRLGSEFTQRLT---FTGRVTLMNSKS-------AAVDNSKRRKTPAPVTPGVADGNISGFRHAADSSPD 792
            MAGRRLLPK  WSLNRVIHDTAAPTV+AR+ AD+   AI H LLEDT++R ++DL +EG+FT IQER L+LPPSLVRL+L GFRG     L  LEL   +  QLD VPPGLRVLKL  +EHPLP LP TLETLVL+ CTHH+  +PDS+RSLSL                                 ELNGC + T LPQ L+E+RLG EF Q LT   F G VT+    S       AA D S   +  A     VAD  ++ + HAA  + D
Sbjct:    1 MAGRRLLPKNCWSLNRVIHDTAAPTVRARLVADSTDSAISHLLLEDTTKRLVVDLRLEGNFTGIQERSLNLPPSLVRLDLRGFRGVLPAGLHALELGGSQHEQLDYVPPGLRVLKLRDHEHPLPQLPGTLETLVLNQCTHHIAHIPDSLRSLSL---------------------------------ELNGCAIDTDLPQALQELRLGHEFEQILTLKYFRGSVTINGGNSEQIEFGWAAYDISMEAQQRALD---VADTQLAAY-HAAQDAAD 237          
BLAST of jgi.p|Trimin1|349598 vs. uniprot
Match: A0A835ZHU4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHU4_9STRA)

HSP 1 Score: 210 bits (535), Expect = 1.440e-59
Identity = 134/322 (41.61%), Postives = 160/322 (49.69%), Query Frame = 1
Query:   10 VFTSMAGRRLLPKEGWSLNRVIHDTAAPTVKARVEADTVLFAIQHRLLEDTSRRFILDLIMEGDFTRIQERPLSLPPSL------VRLELNGFRG----------------------------------------------------------------------------------LRELELLEFPQLDEVPPGLRVLKLHTYEHPLPPLPDTLETLVLDNCTHHVVDVPDSVRSLSLYWRPPEPAPPLPARWPPHLERLAYWA-----------RCED-------AALELNGCVVHTCLPQNLREMRLGSEFTQRLTFTG 657
            VFTSMAGRRLLPK+ WSL+R++HDT AP +K  + AD++  A  HRLLEDTSRR +  L ++GDFT +Q+RPL+L P L      V +    F G                                                                                  LR L+L  F QL E+PP LRVL L  Y +PLP LPDTLETLVLD CTHHV ++PDSVRSL+LYW P +PAPPLPARWP HLERL  WA            C D         LELNGC + T LPQ L+ +RLG  F+Q L   G
Sbjct:   24 VFTSMAGRRLLPKKCWSLSRLLHDTVAPIIKVHLVADSINAATLHRLLEDTSRRNVQRLTLDGDFTSMQQRPLNLVPLLSPAVAQVDVAFCSFSGSIEDVLTIPSLPEGVASLSVTAGFSRDVVWAFSKLPQSLRHLIVDATTDVIVFEQPLPTLLESFIVESGGEVHVGAGSLPASLRNLQLWGFQQLYELPPRLRVLMLQRYIYPLPLLPDTLETLVLDYCTHHVSNLPDSVRSLALYWHPAQPAPPLPARWPAHLERLVDWAVGESEPDDAPEPCIDRPLPPTLTQLELNGCSIATDLPQTLQTLRLGRGFSQELDLAG 345          
BLAST of jgi.p|Trimin1|349598 vs. uniprot
Match: A0A836CCC0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCC0_9STRA)

HSP 1 Score: 192 bits (489), Expect = 2.200e-51
Identity = 130/304 (42.76%), Postives = 150/304 (49.34%), Query Frame = 1
Query:    1 MRRVFTSMAGRRLLPKEGWSLNRVIHDTAAPTVKARVEADTVLFAIQHRLLEDTSRRFILDLIMEGDFTRIQERPLSLPPSLVRLELNGFR----------------------------------------GLRELELLEF---------------PQLDEVPPGLRVLKLHTYEHPLPPLPDTLETLVLDNCTHHVVDVPDSVRSLSLYWRPPEPAPPLPARWPPHLERLAYWARC----EDAA-----------LELNGC-VVHTCLPQNLREMRLGSEFTQRLT-----FTGRVTLMNSKS 684
            MRRVFTSMAGRRLLPKE WSLNR IHDTAAPTV+  + A +   AI H LLE   RR I++L MEGDFT+IQ  PLSLPPSLVRL L GFR                                        GL  L++                  P+L ++PPGLRVLKL  YEHPLPPLP TLETL                           PAPPLP  WP HLE L YWA      ED A           LELNGC V+   +PQ L+E+RLG E           FTG + + +++S
Sbjct:  226 MRRVFTSMAGRRLLPKESWSLNRAIHDTAAPTVEVHLVAGSASPAIAHCLLEGIVRRLIVNLTMEGDFTKIQAHPLSLPPSLVRLSLRGFRVHWQDLIALLSPAVANVEVHSCLFASDIRSHAVTILSLPEGLSSLQMAACNTVSSGRVIFSRAPTPELADLPPGLRVLKLRAYEHPLPPLPHTLETL---------------------------PAPPLPDDWPAHLEHLVYWATAASDSEDRAWVDHLPLTLTRLELNGCAVLDGAVPQTLQELRLGRELRHAFDLDVKKFTGTIKINSNRS 502          
BLAST of jgi.p|Trimin1|349598 vs. uniprot
Match: A0A836CBV0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBV0_9STRA)

HSP 1 Score: 189 bits (480), Expect = 1.890e-49
Identity = 91/131 (69.47%), Postives = 104/131 (79.39%), Query Frame = 1
Query:  274 GLRELELLEFPQLDEVPPGLRVLKLHTYEHPLPPLPDTLETLVLDNCTHHVVDVPDSVRSLSLYWRPPEPAPPLPARWPPHLERLAYWARCEDAALELNGCVVHTCLPQNLREMRLGSEFTQRLTFTGRVT 666
            GLR+LEL++FPQL EVPPGLR LKL  YEHPLPPLPDTLETLVLD C HHV D+P+SVRSLSLYW PP+PAPPLPARWP  +ERL YW + E++ L           PQ L+E+RLGSEFTQ +TFTGRVT
Sbjct:  448 GLRKLELIDFPQLAEVPPGLRELKLREYEHPLPPLPDTLETLVLDECAHHVTDIPNSVRSLSLYWLPPQPAPPLPARWPARMERLVYWGKYEESGL-----------PQMLQELRLGSEFTQAMTFTGRVT 567          
BLAST of jgi.p|Trimin1|349598 vs. uniprot
Match: A0A835YM31_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM31_9STRA)

HSP 1 Score: 189 bits (479), Expect = 7.670e-49
Identity = 148/445 (33.26%), Postives = 174/445 (39.10%), Query Frame = 1
Query:    1 MRRVFTSMAGRRLLPKEGWSLNRVIHDTAAPTVKARVEADTVLFAIQHRLLEDTSRRFILDLIMEGDFTRIQERPLSLPPSLVRLELNGFRG--------LRELEL-------------------------------------------------------------------------------------------------------------------------------------------------------------LEFP-----------------------------------------QLDEVPPGLRVLKLHTYEHPLPPLPDTLETLVLDNCTHHVVDVPDSVRSLSLYWR--PPEPAPPLPARWPPHLERLAYWA---------RCEDAA-----LELNGCVVHTCLPQNLREMRLGSEFTQRL---TFTGR 660
            +R V  +MAGRRLLPKE WSL+R +HD+AAPTV+ R+ AD+  FAI HRLL+DT+RR ++ L MEGDF+ IQ+RPLSLP SLVRLEL+GFRG        LREL L                                                                                                                                                             +E P                                         QLDE+PPGLRVLKL ++EH LPP PDTLETLVLDNCTH + D+PDSV+SLSLYW   PP    P+P RWP  LE L YW          R E        LELN C +H  LPQ L+E+RLG EF Q L    FTGR
Sbjct:  184 LRMVLLNMAGRRLLPKEAWSLSRSVHDSAAPTVQVRLVADSAAFAIPHRLLDDTARRLVVKLTMEGDFSSIQDRPLSLPASLVRLELHGFRGELGPAPAGLRELFLCACRDQGIHHPLLEVLADEYNVLQFLHETAEMVGSMLPTLRVLHVDGLNLRHDLRACMQVLCELPHPYLEDLTLSNFKLHLEDLLSLLSPPVAMVNMVYCSLESDAVSSRFTMPTFPEGLISLSVKDCYFAREGLVLSRLPNSLRHIIVESSSEDVDIELPLPTLLESLSLAATRNSESFNITAGMLPAGLQSLELAGSRHAQLDEMPPGLRVLKLRSHEHLLPPFPDTLETLVLDNCTHQIADIPDSVQSLSLYWSQDPPALQLPVPTRWPACLEHLVYWGTRTHQDRRPRVERLPPTLRWLELNCCEIHADLPQTLQELRLGREFNQPLHLEQFTGR 628          
BLAST of jgi.p|Trimin1|349598 vs. uniprot
Match: A0A836CEP4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEP4_9STRA)

HSP 1 Score: 172 bits (436), Expect = 2.770e-45
Identity = 116/277 (41.88%), Postives = 126/277 (45.49%), Query Frame = 1
Query:   22 MAGRRLLPKEGWSLNRVIHDTAAPTVKARVEADTVLFAIQHRLLEDTSRRFILDLIMEGDFTRIQERPLSLPPSL----------------------------VRLELNGFRG--------LREL-------------------ELLEFPQLDEVPPGLRVLKLHTYEHPLPPLPDTLETLVLDNCTHHVVDVPDSVRSLSLYWRPPEPAPPLPARWPPHLERLAYWARCEDAA-------------LELNGCVVHTCLPQNLREMRLGSEFTQRLT 648
            MAGRRLLPKEGWSLNR IHDTAAPT                                 GDFT IQERPLSLP +L                            VRLELNG RG        LR                     +L+  PQL+ VPPGLR LKL  YEHPLP LPDT                   VR LSLYW+PP+PAPPLPARWP HLERL YW +   A              LELNGC VH  LPQ L+ +RLG    + LT
Sbjct:    1 MAGRRLLPKEGWSLNRAIHDTAAPT---------------------------------GDFTSIQERPLSLPATLGRRRIISLTMEXXXXXXXXXXXXXXXXXVRLELNGSRGELGPAPAGLRXXXXXXXXXXXXXXXXXXXXXQLVGSPQLEHVPPGLRALKLRDYEHPLPQLPDTXXXXXXXXXXXXXXXXXXXVRLLSLYWQPPQPAPPLPARWPTHLERLVYWGKSAVAEPPRIAHLPRTLRQLELNGCEVHARLPQTLQRVRLGPTMARSLT 244          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349598 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YUC4_9STRA2.090e-65100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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BLAST of jgi.p|Trimin1|349598 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A835YTI8_9STRA8.500e-266100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YUX2_9STRA4.750e-8458.92Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YUY3_9STRA7.140e-7658.70Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CD10_9STRA4.840e-6940.46Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z745_9STRA4.160e-6151.09Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZHU4_9STRA1.440e-5941.61Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CCC0_9STRA2.200e-5142.76Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CBV0_9STRA1.890e-4969.47Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YM31_9STRA7.670e-4933.26Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CEP4_9STRA2.770e-4541.88Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_46contigContig_46:62912..65247 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|349598|estExt_Genemark1.C_Ctg_460012
Preferred nameRIIAD1
Descriptionregulatory subunit of type II PKA R-subunit (RIIa) domain containing 1
COG categoryS
Max annot lvl33208|Metazoa
EggNOG OGs2CZ7Y@1|root,2S8ZF@2759|Eukaryota,3A60F@33154|Opisthokonta,3BSW6@33208|Metazoa
Evalue1.03e-06
Seed ortholog45351.EDO45600
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_003440.1
TranscriptId349920
TrackFilteredModels1
ProteinId349598
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349598gene_4555Tribonema minus UTEX_B_3156 geneContig_46 62912..65247 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4555_2exon_4555_2Tribonema minus UTEX_B_3156 exonContig_46 62912..63778 -
exon_4555_1exon_4555_1Tribonema minus UTEX_B_3156 exonContig_46 65149..65247 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_4555UTR3_4555Tribonema minus UTEX_B_3156 three_prime_UTRContig_46 62912..63337 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4555CDS_4555Tribonema minus UTEX_B_3156 CDSContig_46 65149..65247 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349598Trimin1|349598|estExt_Genemark1.C_Ctg_460012Tribonema minus UTEX_B_3156 polypeptideContig_46 63338..65247 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4555 ID=mRNA_4555|Name=jgi.p|Trimin1|349598|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=966bp|location=Sequence derived from alignment at Contig_46:62912..65247- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGATGGACAGCCTGTGGCGGTGGACGCAGGCAGTGAGGACAACGC
GTCTGGTGCGGGAGCGGAAGAACCAGGTTGCTCTACGGATGATACCAAGA
CCGACCTCGAGGCGGAGAATGAGGCGTACCTGCGCGACAAGCCGGAGGTC
ATGGCGCTCATCCGCCTGTTCATGACGACGGTGCTGGAGCAGCGCCCCGC
GGACCCGCGTGCGTTCGCCGCAGAGTTCTTTGGGCGCGACACCGTGCTGG
AGCGCGCGCGCGAGCGCGGCGGCGGCGGCGGCGCCGCTGCCGCGGCAGCG
CGGCCGCGCGAGCGCAGCAGCAGTCACGCTGAGAGGGACGCTTCCGCCGC
GGCGGCGGAGGCGCCTCCGCACGAGGGGGCGGGGGCGCGCGGAAGCAGAG
CGCAGAGCGCGCCAGGCGCTGCCGCCGCGGCATCAGCGAATGAGAGCACT
TCGGGCGATGGCTTGCCGCGCTTGCGTGAAGAGGAGCGCGATGGGGCGAG
ACAATGTAGGAGGCCACCCGACCCGTCGTCGCCGACGTGAGCGCTGCCAC
CTCAGCCATGCAGACGTAGGCGTTTCCACTCGATCACAGCAAGGTGCTCA
TTGCGCGCGCACAGCGCAGCGCGTCAGCGCTGCGCACCCCGCCAAGCTTC
GCTGCCTTAGATGCCTCCCTTGCGTCACGCAATTGCCTGCCTTTTATGCT
TTCAAGCGTCGCACGCATCATGGGCGGATTCGACGCCTGTGGCGCGCGAG
GCTACCTTCGACGCCGCCAGCCTTTTTACGATGATGAGCACAGCTCGACA
GCACCGCACCTTCGGGCCATGCGGCGGCCGTAGGCATGAATGGCGGCGCG
GGTGTGCGCTCGTCGCCGCCAAGTCTGCGGCCGTGAGCATCCGCACGCTG
TCCCCTTGCGCCCAACCAGAGGCAACAGGCCCGGACTAATGATGGCAATA
ATATACTTAAGAGAAG
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protein sequence of jgi.p|Trimin1|349598

>Trimin1|349598|estExt_Genemark1.C_Ctg_460012 ID=Trimin1|349598|estExt_Genemark1.C_Ctg_460012|Name=jgi.p|Trimin1|349598|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=180bp
MADGQPVAVDAGSEDNASGAGAEEPGCSTDDTKTDLEAENEAYLRDKPEV
MALIRLFMTTVLEQRPADPRAFAAEFFGRDTVLERARERGGGGGAAAAAA
RPRERSSSHAERDASAAAAEAPPHEGAGARGSRAQSAPGAAAAASANEST
SGDGLPRLREEERDGARQCRRPPDPSSPT*
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mRNA from alignment at Contig_46:62912..65247-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4555 ID=mRNA_4555|Name=jgi.p|Trimin1|349598|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2336bp|location=Sequence derived from alignment at Contig_46:62912..65247- (Tribonema minus UTEX_B_3156 )
ATGGCAGATGGACAGCCTGTGGCGGTGGACGCAGGCAGTGAGGACAACGC GTCTGGTGCGGGAGCGGAAGAACCAGGTTGCTCTACGGATGATACCAAGG TGACAGACACAAATATATGCACTGCGCGAGGTTTTTCGTAGTACCAAGTC ATTCACTGTGTCGCTCAATGTTTGCAAGATGATCTCATCATGATGATCTC ATACGTCGACACAAGGTTGTCTGTTGCTTCATGCTGCCTGCAAGTTCGTG CATCGGTCGAAACATGGCGGCGGCTGGAATTGCAAGAGGTTGGTTGATCG CAAATTGGCAGCGATGTTCGTGGCAGCCAGGCTCTCGTATTACCCACTGC AGAATATTCCAGAACCTGCCCCAGTGTCGGTGTGTGTGTGTGTGCGTGTG ATTGCGCTCGTGCTATGAGCGAGCGGCCACACACTTCCTAGGGCACTCAG CAAGCAATTCGCCTGACCGGCGTCACCTATGATTGTTGTCTGTTTTTGTA ACTGTGGCTTCTAGTGTGTTGCGCTTTGCTTGTGACTACCTGAGAATGCC ACCAGGAATGTTTCATGCACCGCTTGTGCCTGGGAGAACCTCAATGCTTT CAAGCAAAGTGACTATGCTGAAGTGCACGAGCAATGCATCCGCACACACT TTCACACATCTGAAGCATTCTTTCATCCACTGCTGCCGAACATGTTGACA GTATATGACTGCATTCATGAGGTCCAGAATGTTGCCTGTCGGGCCGCTTC ACCTGGCCAAGTTCTTGCGAGTGACTGCAGGCATGTGTCTGATCGCGATT TTAAACTACGCACCTACGGTTGGAGGGCGTGTGCATGCGATACACTTTTT GGTCCAGCAGTAAGCTATGGCAATGCAGGGCGTACTGCTTCTGTATGCCA GCATGAGCCTTGCGTGGTTCCCTTGCACTGAGCGTGCCACAGCCTCACGG TCGGCTCTCGCGGCGCACAAGCAGTCCAGCATCGCCAACAGCACCGGCAC TGCATAGGGCAAGTGTCTGGCGACTGCGCCCCAAGCGCGATTCATCGAGA GGTAGTTTGCTCAATCGCTACCGACACTGCGGGCCGTTGTACGTCACGGC AGTGCAGCCGCCACCGCCGCTGCTGCTGCTATAGCAATGTCCTCGATGCG TAGCACGCTTTAAGTATTGTAGTAGCCTGAGGCCGTTCGGCTTGTGATAG GCATTCACCTGAGCACTTCGAGCTGGACGTAGCAGCTCATGTGCACCTAT TGCGGTCGCGGCGGGGCACCATGCTGCTTGTGGCCCCATGACAGTATCGT CGACTCACAGACTTGCTGGTCCTGGGTAGGCCCTCAGCGCCCAGGCCTGC TAACGCATACCACCAGAGTATACATCTATCGAGCACAAGCTCGCTCAAAT CTGTAACGGCGCACACACTCCACCACACGCTCACCCGCGCGCCGCGCACG CCGCCGCCTGCGCGCGCAGACCGACCTCGAGGCGGAGAATGAGGCGTACC TGCGCGACAAGCCGGAGGTCATGGCGCTCATCCGCCTGTTCATGACGACG GTGCTGGAGCAGCGCCCCGCGGACCCGCGTGCGTTCGCCGCAGAGTTCTT TGGGCGCGACACCGTGCTGGAGCGCGCGCGCGAGCGCGGCGGCGGCGGCG GCGCCGCTGCCGCGGCAGCGCGGCCGCGCGAGCGCAGCAGCAGTCACGCT GAGAGGGACGCTTCCGCCGCGGCGGCGGAGGCGCCTCCGCACGAGGGGGC GGGGGCGCGCGGAAGCAGAGCGCAGAGCGCGCCAGGCGCTGCCGCCGCGG CATCAGCGAATGAGAGCACTTCGGGCGATGGCTTGCCGCGCTTGCGTGAA GAGGAGCGCGATGGGGCGAGACAATGTAGGAGGCCACCCGACCCGTCGTC GCCGACGTGAGCGCTGCCACCTCAGCCATGCAGACGTAGGCGTTTCCACT CGATCACAGCAAGGTGCTCATTGCGCGCGCACAGCGCAGCGCGTCAGCGC TGCGCACCCCGCCAAGCTTCGCTGCCTTAGATGCCTCCCTTGCGTCACGC AATTGCCTGCCTTTTATGCTTTCAAGCGTCGCACGCATCATGGGCGGATT CGACGCCTGTGGCGCGCGAGGCTACCTTCGACGCCGCCAGCCTTTTTACG ATGATGAGCACAGCTCGACAGCACCGCACCTTCGGGCCATGCGGCGGCCG TAGGCATGAATGGCGGCGCGGGTGTGCGCTCGTCGCCGCCAAGTCTGCGG CCGTGAGCATCCGCACGCTGTCCCCTTGCGCCCAACCAGAGGCAACAGGC CCGGACTAATGATGGCAATAATATACTTAAGAGAAG
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Coding sequence (CDS) from alignment at Contig_46:62912..65247-

>mRNA_4555 ID=mRNA_4555|Name=jgi.p|Trimin1|349598|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=540bp|location=Sequence derived from alignment at Contig_46:62912..65247- (Tribonema minus UTEX_B_3156 )
ATGGCAGATGGACAGCCTGTGGCGGTGGACGCAGGCAGTGAGGACAACGC
GTCTGGTGCGGGAGCGGAAGAACCAGGTTGCTCTACGGATGATACCAAGA
CCGACCTCGAGGCGGAGAATGAGGCGTACCTGCGCGACAAGCCGGAGGTC
ATGGCGCTCATCCGCCTGTTCATGACGACGGTGCTGGAGCAGCGCCCCGC
GGACCCGCGTGCGTTCGCCGCAGAGTTCTTTGGGCGCGACACCGTGCTGG
AGCGCGCGCGCGAGCGCGGCGGCGGCGGCGGCGCCGCTGCCGCGGCAGCG
CGGCCGCGCGAGCGCAGCAGCAGTCACGCTGAGAGGGACGCTTCCGCCGC
GGCGGCGGAGGCGCCTCCGCACGAGGGGGCGGGGGCGCGCGGAAGCAGAG
CGCAGAGCGCGCCAGGCGCTGCCGCCGCGGCATCAGCGAATGAGAGCACT
TCGGGCGATGGCTTGCCGCGCTTGCGTGAAGAGGAGCGCGATGGGGCGAG
ACAATGTAGGAGGCCACCCGACCCGTCGTCGCCGACGTGA
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