mRNA_4541 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|166050
Unique NamemRNA_4541
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|166050 vs. uniprot
Match: A0A836CC90_9STRA (Pept_C1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC90_9STRA)

HSP 1 Score: 719 bits (1855), Expect = 9.630e-262
Identity = 361/361 (100.00%), Postives = 361/361 (100.00%), Query Frame = 1 
Query:    1 MASSSSRRPAARAAEAALPAAAALVLAYAWAGRQRAPRIPRLFGASASEPLPSYFKYHEALLNPPRDQLGCASCWAFAVCDMAADALNLRTEGAWGVRPLSPQYLLSCAPGLTQSCEEGGIPEEALESPAATSEGGGIPLESEVPYRADEGPCAASSARPSPGGVRVRIAPGSSLSLCDDPSLALPGMRGATVKRNVANMKRAIMRHGPVVGTLRVTEDLYDYAASEIYRQDPASAFVGYHAVLIVGWCDARVNSAEPGFDGAYWVIKSSWGQHWGVPEGVRSGYAYVAMGENIAEVESRASVATAVLPDGFAEAEGWQKRTAYWSYDDYARDPDRDNFLGAVARAHAEQRGAREKGDPKP 1083
            MASSSSRRPAARAAEAALPAAAALVLAYAWAGRQRAPRIPRLFGASASEPLPSYFKYHEALLNPPRDQLGCASCWAFAVCDMAADALNLRTEGAWGVRPLSPQYLLSCAPGLTQSCEEGGIPEEALESPAATSEGGGIPLESEVPYRADEGPCAASSARPSPGGVRVRIAPGSSLSLCDDPSLALPGMRGATVKRNVANMKRAIMRHGPVVGTLRVTEDLYDYAASEIYRQDPASAFVGYHAVLIVGWCDARVNSAEPGFDGAYWVIKSSWGQHWGVPEGVRSGYAYVAMGENIAEVESRASVATAVLPDGFAEAEGWQKRTAYWSYDDYARDPDRDNFLGAVARAHAEQRGAREKGDPKP
Sbjct:    1 MASSSSRRPAARAAEAALPAAAALVLAYAWAGRQRAPRIPRLFGASASEPLPSYFKYHEALLNPPRDQLGCASCWAFAVCDMAADALNLRTEGAWGVRPLSPQYLLSCAPGLTQSCEEGGIPEEALESPAATSEGGGIPLESEVPYRADEGPCAASSARPSPGGVRVRIAPGSSLSLCDDPSLALPGMRGATVKRNVANMKRAIMRHGPVVGTLRVTEDLYDYAASEIYRQDPASAFVGYHAVLIVGWCDARVNSAEPGFDGAYWVIKSSWGQHWGVPEGVRSGYAYVAMGENIAEVESRASVATAVLPDGFAEAEGWQKRTAYWSYDDYARDPDRDNFLGAVARAHAEQRGAREKGDPKP 361
[Close]
BLAST of jgi.p|Trimin1|166050 vs. uniprot
Match: A0A835YX55_9STRA (Putative cysteine protease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX55_9STRA)

HSP 1 Score: 325 bits (832), Expect = 1.940e-106
Identity = 172/327 (52.60%), Postives = 215/327 (65.75%), Query Frame = 1 
Query:   67 ALVLAYAWAGRQRAPRIPRLFGASASEPLPSYFKYHEALLNPPRDQLGCASCWAFAVCDMAADALNLRTEGAWGVRPLSPQYLLSCAPGLTQSCEEGGIPEEALESPAATSEGGGIPLESEVPYRADEGPCAASSARPSPGGV-RVRIAPGSSLSLCDDPSLALPGMRGATVKRNVANMKRAIMRHGPVVGTLRVTEDLYDYAASEIYRQDPASAFVGYHAVLIVGWCDARVNSAEPGFDGAYWVIKSSWGQHWGVPEGVRSGYAYVAMGENIAEVESRASVATAVLPDGFAEAEGWQKRTA--YWSYDDYARDPDRDNFLGAVARA 1038
            A++LA+A+     A  +     A    PLPSY KY E  L P RDQ  CA+CW+F+V DM AD LN +T GA+G RPLS QYLLSC+    + CE GG PE+  + P  T    G PL++++PY   E PC     RP P  V RVR  P +++SLCDDP  ALPG R AT++RNV NMKRA++++GP+VGTLRVT DLY Y    I+R DPAS F GYHAV IVGWCD  VN AEPGFDGAYW+++SSWG  WGVP+G+R G+AYV MGEN A++ESRASV     P    E       +A  Y SY+ Y  DP+R+NF+G +  A
Sbjct:   20 AVLLAFAYRSASFATPV-----ADDGAPLPSYLKYKEKFLMPVRDQRCCAACWSFSVADMMADTLNAQTAGAFGKRPLSAQYLLSCS-SAHRGCEVGGSPEDVYDLPQLTD--AGCPLDADLPYEGKETPC-----RPLPPDVLRVRTVPNTAVSLCDDPDRALPGTRAATIRRNVRNMKRALLQYGPIVGTLRVTGDLYAYRGDGIFRGDPASKFYGYHAVEIVGWCDENVNWAEPGFDGAYWIVRSSWGFDWGVPKGMRYGWAYVTMGENCADIESRASVCRVEFPMALEEVRRRTPTSAARYESYEHYVDDPERENFIGGLKTA 333
[Close]
BLAST of jgi.p|Trimin1|166050 vs. uniprot
Match: A0A836CER7_9STRA (FirrV-1-A48 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CER7_9STRA)

HSP 1 Score: 293 bits (751), Expect = 2.520e-94
Identity = 163/325 (50.15%), Postives = 203/325 (62.46%), Query Frame = 1 
Query:   64 AALVLAYAWAGRQRAPRIPRLFGASASEPLPSYFKYHEALLNPPRDQLGCASCWAFAVCDMAADALNLRTEGAWGVRPLSPQYLLSCAPGLTQSCEEGGIPEEALESPAATSEGGGIPLESEVPYRADEGPCAASSARPSPGGVRVRIAPGSSLSLCDDPSLALPGMRGATVKRNVANMKRAIMRHGPVVGTLRVTEDLYDYAASEIYRQDPASAFVGYHAVLIVGWCDARVNSAEPGFDG-AYWVIKSSWGQHWGVPEGVRSGYAYVAMGENIAEVESRASVATAVLPDGFAEAEGWQKRTA--YWSYDDYARDPDRDNFLGAV 1029
            AA+++  A+    RA  IP       +  LPSY KY E  L P RDQ  CA+CW+++V DM AD LN+ T G +G RPLS QYLLSC+    + C+ GG PE     P  T  G   PL++++PY   EG        P P   RVR    +++ LCDDPSLALPG RGAT+KRNV NMKRA+M +GP+VGT+RVTEDLY Y A  IYR DP S  VGYHA+ I+GWC   VN  EPGFD  A+W+ +SSWG +WGVP GV SG+A++ MG N+ ++ESRASV     P   A        T   Y SY DYA DP+R NF+ AV
Sbjct:   12 AAIIVVIAYRVSSRASIIP------LTAALPSYLKYKERWLMPVRDQGPCAACWSYSVVDMMADTLNVWTAGGYGKRPLSAQYLLSCSKAH-EGCDVGGSPEAVYNLPQMTDVG--CPLDADLPY---EGKVTECKQLP-PDAFRVRTIKNTAVDLCDDPSLALPGTRGATIKRNVENMKRALMAYGPIVGTIRVTEDLYAYKADGIYRGDPTSKLVGYHAIEIIGWCCEAVNIREPGFDSPAFWICRSSWGVYWGVPPGVSSGFAFIEMGANVCDIESRASVCRVNFPKELAAIAKKTPLTEVRYESYTDYADDPERQNFIDAV 323
[Close]
BLAST of jgi.p|Trimin1|166050 vs. uniprot
Match: A0A835Z8B2_9STRA (Putative cysteine protease n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8B2_9STRA)

HSP 1 Score: 266 bits (681), Expect = 9.300e-84
Identity = 146/314 (46.50%), Postives = 190/314 (60.51%), Query Frame = 1 
Query:  112 RIPRLFGASASEPLPSYFKYHEALLNPPRDQLGCASCWAFAVCDMAADALNLRTEGAWGVRPLSPQYLLSCAPGLTQSCEEGGIPEEALESPAATSEGGGIPLESEVPYRA-DEGPCAASSARPSPGGVRVRIAPGSSLSLCDDPSLALPGMRGATVKRNVANMKRAIMRHGPVVGTLRVTEDLYDYAASEIYRQDPASAFVGYHAVLIVGWCDARVNSAEPGFDGAYWVIKSSWGQHWGVPEGVRSGYAYVAMGENIAEVESRASVATAVLPDGFAEAEGWQK--RTAYWSYDDYARDPDRDNFLGAVARAHA 1044
            RI     A+A + LP+YFK+ E  L P R+Q GCA+CWA +VCDM +D +NLR+ G WG   LSPQYL+SC  G  + C  GG PE   + P  T    GIPLE E PY A D  PC A +     G +RVR    +   LC DP+     +R   +  N+  MK+A++ +GP+VGTLRV EDLY Y    IY+  P S  +GYHAV +VGW +  VN AEPGFD AYWV++SSWG +WG   G+R G+AYV MG N A++ESRASV    +P+   +A          Y SY  Y  DP+R +F+GA+ + HA
Sbjct:   29 RIYTAVAAAAPDDLPTYFKWKERFLVPVRNQKGCAACWALSVCDMMSDTINLRSGGQWGRNHLSPQYLISCWSGH-EGCNTGGSPEGTYDLPQLTD--AGIPLEEEFPYVATDTAPCKAITE----GVLRVRTVKNTGRDLCIDPATVPENVRQQVIDANIVRMKKALL-NGPIVGTLRVHEDLYKYDGLAIYQVTPGSRQIGYHAVEVVGWANEEVNFAEPGFDDAYWVVRSSWGDNWGA-RGIRYGFAYVKMGCNEADIESRASVCEVEMPESVKDAIAATDIDTMRYTSYTQYVEDPERSHFVGAMVKNHA 333
[Close]
BLAST of jgi.p|Trimin1|166050 vs. uniprot
Match: A0A836CH74_9STRA (FirrV-1-A48 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH74_9STRA)

HSP 1 Score: 261 bits (668), Expect = 4.370e-82
Identity = 146/311 (46.95%), Postives = 189/311 (60.77%), Query Frame = 1 
Query:  115 IPRLFGASASEPLPSYFKYHEALLNPPRDQLGCASCWAFAVCDMAADALNLRTEGAWGVRPLSPQYLLSCAPGLTQSCEEGGIPEEALESPAATSEGGGIPLESEVPYRADEGPCAASSARPSPGGVRVRIAPGSSLSLCDDPSLALPGMRGATVKRNVANMKRAIMRHGPVVGTLRVTEDLYDYAASEIYRQDPASAFVGYHAVLIVGWCDARVNSAEPGFDGAYWVIKSSWGQHWGVPEGVRSGYAYVAMGENIAEVESRASVATAVLPDGFAEAEGWQKRT--AYWSYDDYARDPDRDNFLGAVARAH 1041
            I R+ G   S  LPSYFK+ E  L P R+Q GCASCW+ +VCDM AD+LNL+T GA+G+ PLS QYLLSC  G    C+ G  PE   + P  T +G  IPLES  PY+A +     +  + + G  RV+    ++  +C +P+  +   +   + RN+ NMKRA+ R  P+VGTLRV  D+Y+Y    IY   P S  +GYHAVLIVG+ DA  N+ EPGF   YWV KSSWG  WG  +G + G+ YV MG N A++ESRAS    V+PD   +A      T  AY SY +Y  DPDR NFLG+V  AH
Sbjct:   12 IRRVIGLG-SVGLPSYFKWREKWLMPVRNQRGCASCWSISVCDMLADSLNLKTGGAYGLNPLSSQYLLSCYRGHL-GCDIGDSPENVYDLPQLTEQG--IPLESAFPYQASD---TLACPKFADGIQRVKTVKSTAEDICLEPNTVVFTSKQDVINRNIVNMKRALQR-SPIVGTLRVHHDVYNYDGKSIYTVTPGSPLIGYHAVLIVGYADANANTHEPGFSEGYWVAKSSWGNSWGAQDGDKRGFIYVKMGVNEADIESRASRCDVVVPDELKDAVAATDMTQMAYSSYSEYVNDPDRFNFLGSVKSAH 314
[Close]
BLAST of jgi.p|Trimin1|166050 vs. uniprot
Match: A0A224XSC2_9HEMI (Putative cathepsin b-like cysteine protease (Fragment) n=1 Tax=Panstrongylus lignarius TaxID=156445 RepID=A0A224XSC2_9HEMI)

HSP 1 Score: 82.8 bits (203), Expect = 4.160e-14
Identity = 77/247 (31.17%), Postives = 105/247 (42.51%), Query Frame = 1 
Query:  196 RDQLGCASCWAFAVCDMAADALNLRTEGAWGVRPLSPQYLLSCAPGLTQSCEEGGIPEEALES--PAATSEGGGI------------PLESEVPYRADEGPCAASSARPSPGGVRVRIAPGSSLSLCDDPSLALPGMRGATVKRNVANMKRAIMRHGPVVGTLRVTEDLYDYAASEIYRQDPASAFVGYHAVLIVGWCDARVNSAEPGFDGAYWVIKSSWGQHWGVPEGVRSGYAYVAMGENIAEVE 894
            RDQ  C SCWA A   + +D + + +EG   V  LS + LLSC       C  GG P+ A E         GG              P E  VP    E  C   +  P       + A G  +    D     PG    TV+ +   ++  I+++GPVV TL V EDL++Y   E   Q  A  FVG HA+ I+GW    V +  P     YW+  +SW   WG      +G+  +  G N  +VE
Sbjct:  101 RDQGSCGSCWALASVGVMSDRMCIHSEGRLQVN-LSAENLLSCCESCGYGCT-GGSPDAAWEYWYDFGIVSGGNYGSKQGCQPYSLAPCEHNVPGVTPE--CKGVTDTPK---CEKQCAKGYDIPYDKDLYYGKPGY---TVQNDTRKIQAEILKYGPVVATLSVYEDLFNY--KEGVYQHVAGYFVGLHAIKILGW---GVENGTP-----YWLTANSWNTDWG-----NNGFFKILRGTNNCDVE 322
[Close]
BLAST of jgi.p|Trimin1|166050 vs. uniprot
Match: A0A5A7RZB7_9ARCH (PKD domain-containing protein n=2 Tax=Thermoplasmata archaeon TaxID=1906666 RepID=A0A5A7RZB7_9ARCH)

HSP 1 Score: 82.8 bits (203), Expect = 1.460e-13
Identity = 77/235 (32.77%), Postives = 103/235 (43.83%), Query Frame = 1 
Query:  187 NPPRDQLGCASCWAFAVCDMAADALNLRTEGAWGVR-PLSPQYLLSCAPGLTQSCEEGGIPE-EALESPAATSEGGGIPLESEVPYRA-DEGPCAASSARPSPGGVRVRIAPGSSLSLCDDPSLALPGMRGATVKRNVAN--MKRAIMRHGPVVGTLRVTEDLYDYAASEIYRQDPASAFVGYHAVLIVGWCDARVNSAEPGFDGAYWVIKSSWGQHWGVPEGVRSGYAYVAMGE 876
             P RDQ  C SCWAFA        +N+R EG   +   LS QYLLSC P        GG     A  +    ++ GG  LES  PY A D  PC+                       C D    L  +       NV +  +K  I  HGPVV T++V ED Y+Y    +YR    + FVG+H V+I+G+ D +            W+ K+SWG++WG       G+  +A GE
Sbjct:  183 TPARDQKACGSCWAFAAMGALEAIVNIR-EGFPDIDVDLSEQYLLSCPPN------SGGCSGWNAYFAYEYIAKNGGALLESCFPYGASDIIPCS---------------------DKCPDWEEKLVPIVDYGWYMNVDDEFIKYMIYNHGPVVATMKVYEDFYEYEEG-VYRHTYGN-FVGWHQVVIIGYDDEQ----------RCWICKNSWGRYWG-----EDGFFRIAYGE 372
[Close]
BLAST of jgi.p|Trimin1|166050 vs. uniprot
Match: A0A660ZMW1_9BACT (Pept_C1 domain-containing protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A660ZMW1_9BACT)

HSP 1 Score: 77.8 bits (190), Expect = 4.790e-12
Identity = 71/221 (32.13%), Postives = 98/221 (44.34%), Query Frame = 1 
Query:  187 NPPRDQLGCASCWAFA---VCDMAADALNLRTEGAWGVRPLSPQYLLS----CAPGLTQSCEEGGIPEEALESPAATSEGGGIPLESEVPYRADEGPCAASSARPSPGGVRVRIAPGSSLSLCDDPSLALPGMRGATVKRNVANMKRAIMRHGPVVGTLRVTEDLYDYAASEIYRQDPASAFVGYHAVLIVGWCDARVNSAEPGFDGAYWVIKSSWGQHWG 828
             P +DQ  C SCW FA   V +   D L+L    A G   LS +Y+LS    C+P   + C+ GG  + AL    A     G   E+  PY A++              +R  +  GS+L L D       G    T   + + +K A+ R GPV+ T+ V ED +DY  + +Y     S  VG HAV IVGW D              W+ K+SW + WG
Sbjct:  258 TPIKDQRNCGSCWDFAAVAVAESQFDILSLDPSNAVG-EILSEEYVLSHCSDCSP--RRGCD-GGWADRAL----AFLTKWGTTTEAAFPYNAEDS-------------LRTPLEDGSTLRLED-----WGGYIKYTGDLSNSTIKEAVYRFGPVLATMLVYEDFFDYT-NGVYEPVEGSKKVGSHAVTIVGWDDEE----------DAWICKNSWSRLWG 441
[Close]
BLAST of jgi.p|Trimin1|166050 vs. uniprot
Match: A0A8J4BDD4_9CHLO (Pept_C1 domain-containing protein (Fragment) n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4BDD4_9CHLO)

HSP 1 Score: 70.1 bits (170), Expect = 1.990e-9
Identity = 67/232 (28.88%), Postives = 99/232 (42.67%), Query Frame = 1 
Query:  151 LPSYFKYHEALLNPP--RDQLGCASCWAFAVCDMAADALNLRTEGAWGVRPLSPQYLLSCAPGL-TQSCEEGGIPEEALESPAATSEGGGIPLESEVPYRADEGPCAASSARPSPGGVRVRIAPGSSLSLCDDPSLALPGMRGATVKRNVANMKRAIMRHGPVVGTLRVTEDLYDYAASEIYRQD--PASAFVGYHAVLIVGWCDARVNSAEPGFDGAYWVIKSSWGQHWGV 831
            LP+   Y     + P  +DQL CASCWAF+       A    T  +      S Q L+ CA       C  G +P       AA    GGI  E +  +   EG C    A  SP   R   AP  S SL +    A  G++  T     A M+ A+  +GP+   +  +   + + +S IY     P+      HAVL++G+    V + +      YW++K+SW + WG+
Sbjct:  410 LPAALDYRATGADGPGVKDQLYCASCWAFSTAGAMTGAWFKATGQSLS---FSEQQLVDCAWNFGLDGCSGGDVPSAVKYVMAA----GGIAQEGDYQFTGQEGTC--RGAVVSPNNTRTGPAPPGSPSLLN----AFSGIKRVTPNDTQAIME-ALYLYGPLPVYMYASMPDFQFYSSGIYSNPDCPSRPREADHAVLLMGYGTDNVTNID------YWIVKNSWSRTWGM 621
[Close]
BLAST of jgi.p|Trimin1|166050 vs. uniprot
Match: A0A258H2K8_9SPHN (Pept_C1 domain-containing protein n=1 Tax=Sphingomonas sp. 32-66-10 TaxID=1970437 RepID=A0A258H2K8_9SPHN)

HSP 1 Score: 69.3 bits (168), Expect = 2.080e-9
Identity = 71/239 (29.71%), Postives = 99/239 (41.42%), Query Frame = 1 
Query:  172 HEALLNPPRDQLGCASCWAFAVCDMAADALNLRTEGAWGVRPLSPQYLLSCAPGLTQSCEEGGIPEEALESPAATSEGGGIPLESEVPYRADEGPCAASSARPSPGGVRVRIAPGSSLSLCDDPSLALPGMRGATVKR---NVANMKRAIMRHGPVVGTLRVTEDLYDYAASEIYRQDPASAFVGYHAVLIVGWCDARVNSAEPGFDGAYWVIKSSWGQHWGVPEGVRSGYAYVAMGEN 879
            +E+ +   R+Q GC SCWAF           LR      V   S Q+++SCA     SC  GG  +        T     +  E++ PY A  G C      P+P G     A G                   TVK     VA +K A++ HGP+   +RVT     Y A    + D  + ++  H V+IVGW DA+         GA W I++SWG  WG      +GY ++  G N
Sbjct:  149 YESRMPAIRNQGGCGSCWAFTAMGAYEGTYRLRFNA---VIDTSEQHIVSCAGA--GSCA-GGWWDPVFTWMLGTK----VRSEAQTPYTASNGVCT-----PAPTGTYKAAAWGF-----------------VTVKAAVPTVAQLKSALVTHGPLAVAVRVTPAFQAYTAGVFNQND--TGWIN-HGVVIVGWDDAK---------GA-WRIRNSWGTGWG-----ENGYMWIKYGAN 337
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|166050 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CC90_9STRA9.630e-262100.00Pept_C1 domain-containing protein n=1 Tax=Tribonem... [more]
A0A835YX55_9STRA1.940e-10652.60Putative cysteine protease n=1 Tax=Tribonema minus... [more]
A0A836CER7_9STRA2.520e-9450.15FirrV-1-A48 n=2 Tax=Tribonema minus TaxID=303371 R... [more]
A0A835Z8B2_9STRA9.300e-8446.50Putative cysteine protease n=2 Tax=Tribonema minus... [more]
A0A836CH74_9STRA4.370e-8246.95FirrV-1-A48 n=1 Tax=Tribonema minus TaxID=303371 R... [more]
A0A224XSC2_9HEMI4.160e-1431.17Putative cathepsin b-like cysteine protease (Fragm... [more]
A0A5A7RZB7_9ARCH1.460e-1332.77PKD domain-containing protein n=2 Tax=Thermoplasma... [more]
A0A660ZMW1_9BACT4.790e-1232.13Pept_C1 domain-containing protein n=1 Tax=bacteriu... [more]
A0A8J4BDD4_9CHLO1.990e-928.88Pept_C1 domain-containing protein (Fragment) n=1 T... [more]
A0A258H2K8_9SPHN2.080e-929.71Pept_C1 domain-containing protein n=1 Tax=Sphingom... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_41contigContig_41:995562..996647 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|166050|e_gw1.41.101.1
BRITEko00000,ko00001,ko00536,ko01000,ko01002,ko03110,ko04147
KEGG Pathwayko04140,ko04142,ko04210,ko04612,ko04621,ko04924,map04140,map04142,map04210,map04612,map04621,map04924
KEGG koko:K01363
EC3.4.22.1
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0005198,GO:0005201,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005604,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006807,GO:0006810,GO:0007155,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009966,GO:0009967,GO:0010646,GO:0010647,GO:0016192,GO:0016197,GO:0016787,GO:0017147,GO:0019538,GO:0022610,GO:0023051,GO:0023056,GO:0030111,GO:0030177,GO:0030312,GO:0031012,GO:0033036,GO:0035592,GO:0035593,GO:0036094,GO:0042600,GO:0043170,GO:0043236,GO:0044238,GO:0044421,GO:0044424,GO:0044464,GO:0045184,GO:0046907,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050840,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060828,GO:0062023,GO:0065007,GO:0070011,GO:0071692,GO:0071704,GO:0071944,GO:0090263,GO:0097159,GO:0140096,GO:1901265,GO:1901363,GO:1901564
Preferred nameTINAGL1
Descriptionscavenger receptor activity
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG1544@1|root,KOG1544@2759|Eukaryota
Evalue1.56e-44
Seed ortholog2880.D8LPA7
Hectar predicted targeting categoryother localisation
TranscriptId166372
TrackFilteredModels1
ProteinId166050
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166050gene_4541Tribonema minus UTEX_B_3156 geneContig_41 995562..996647 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4541_1exon_4541_1Tribonema minus UTEX_B_3156 exonContig_41 995562..996647 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4541CDS_4541Tribonema minus UTEX_B_3156 CDSContig_41 995562..996647 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166050Trimin1|166050|e_gw1.41.101.1Tribonema minus UTEX_B_3156 polypeptideContig_41 995562..996647 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4541 ID=mRNA_4541|Name=jgi.p|Trimin1|166050|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1086bp|location=Sequence derived from alignment at Contig_41:995562..996647- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCGTCGTCGTCGCGCCGCCCCGCCGCCAGGGCCGCGGAGGCCGC
GCTGCCCGCCGCCGCCGCGCTCGTCCTCGCGTACGCGTGGGCGGGCAGGC
AGAGGGCCCCGCGGATCCCCCGACTGTTCGGCGCGTCAGCGTCCGAACCC
CTGCCGAGCTACTTCAAGTACCACGAGGCCCTGCTGAACCCCCCCCGGGA
CCAGCTGGGGTGCGCCTCCTGCTGGGCCTTCGCCGTCTGCGACATGGCGG
CGGACGCCCTGAACCTCAGGACGGAGGGGGCCTGGGGGGTCCGTCCCCTG
AGCCCACAGTACCTGCTGTCCTGCGCCCCGGGGCTGACGCAGAGCTGCGA
GGAGGGGGGCATCCCGGAGGAGGCGCTGGAGTCCCCCGCGGCGACGTCCG
AGGGGGGGGGCATCCCCCTCGAGTCGGAGGTGCCCTACAGGGCGGACGAG
GGGCCGTGCGCCGCGTCGTCCGCTCGGCCGTCGCCCGGCGGCGTCCGCGT
GCGCATCGCCCCCGGGTCCTCCCTCTCCCTGTGCGACGACCCCTCCCTCG
CCCTCCCCGGCATGAGGGGGGCGACCGTCAAGCGCAACGTCGCCAACATG
AAGCGCGCGATCATGAGGCACGGCCCCGTCGTCGGCACCCTCAGGGTGAC
CGAGGACCTGTACGACTACGCGGCGTCGGAGATATACAGGCAGGACCCGG
CGTCGGCGTTCGTCGGGTACCACGCGGTCCTGATCGTCGGGTGGTGCGAC
GCGAGGGTCAACTCCGCGGAGCCCGGCTTCGACGGCGCGTACTGGGTGAT
CAAGTCGAGTTGGGGGCAGCACTGGGGGGTGCCCGAGGGCGTACGCTCGG
GCTACGCGTACGTCGCCATGGGGGAGAACATCGCGGAAGTCGAATCGAGG
GCGAGCGTGGCGACGGCGGTCCTGCCGGACGGGTTCGCGGAGGCCGAGGG
CTGGCAGAAGCGCACCGCCTACTGGTCCTACGACGACTACGCGCGGGACC
CGGACAGGGACAACTTCCTGGGGGCGGTCGCAAGGGCGCACGCCGAGCAG
AGGGGGGCCCGGGAGAAGGGGGATCCCAAGCCCTAG
back to top

protein sequence of jgi.p|Trimin1|166050

>Trimin1|166050|e_gw1.41.101.1 ID=Trimin1|166050|e_gw1.41.101.1|Name=jgi.p|Trimin1|166050|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=362bp
MASSSSRRPAARAAEAALPAAAALVLAYAWAGRQRAPRIPRLFGASASEP
LPSYFKYHEALLNPPRDQLGCASCWAFAVCDMAADALNLRTEGAWGVRPL
SPQYLLSCAPGLTQSCEEGGIPEEALESPAATSEGGGIPLESEVPYRADE
GPCAASSARPSPGGVRVRIAPGSSLSLCDDPSLALPGMRGATVKRNVANM
KRAIMRHGPVVGTLRVTEDLYDYAASEIYRQDPASAFVGYHAVLIVGWCD
ARVNSAEPGFDGAYWVIKSSWGQHWGVPEGVRSGYAYVAMGENIAEVESR
ASVATAVLPDGFAEAEGWQKRTAYWSYDDYARDPDRDNFLGAVARAHAEQ
RGAREKGDPKP*
back to top

mRNA from alignment at Contig_41:995562..996647-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4541 ID=mRNA_4541|Name=jgi.p|Trimin1|166050|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1086bp|location=Sequence derived from alignment at Contig_41:995562..996647- (Tribonema minus UTEX_B_3156 )
ATGGCGTCGTCGTCGTCGCGCCGCCCCGCCGCCAGGGCCGCGGAGGCCGC
GCTGCCCGCCGCCGCCGCGCTCGTCCTCGCGTACGCGTGGGCGGGCAGGC
AGAGGGCCCCGCGGATCCCCCGACTGTTCGGCGCGTCAGCGTCCGAACCC
CTGCCGAGCTACTTCAAGTACCACGAGGCCCTGCTGAACCCCCCCCGGGA
CCAGCTGGGGTGCGCCTCCTGCTGGGCCTTCGCCGTCTGCGACATGGCGG
CGGACGCCCTGAACCTCAGGACGGAGGGGGCCTGGGGGGTCCGTCCCCTG
AGCCCACAGTACCTGCTGTCCTGCGCCCCGGGGCTGACGCAGAGCTGCGA
GGAGGGGGGCATCCCGGAGGAGGCGCTGGAGTCCCCCGCGGCGACGTCCG
AGGGGGGGGGCATCCCCCTCGAGTCGGAGGTGCCCTACAGGGCGGACGAG
GGGCCGTGCGCCGCGTCGTCCGCTCGGCCGTCGCCCGGCGGCGTCCGCGT
GCGCATCGCCCCCGGGTCCTCCCTCTCCCTGTGCGACGACCCCTCCCTCG
CCCTCCCCGGCATGAGGGGGGCGACCGTCAAGCGCAACGTCGCCAACATG
AAGCGCGCGATCATGAGGCACGGCCCCGTCGTCGGCACCCTCAGGGTGAC
CGAGGACCTGTACGACTACGCGGCGTCGGAGATATACAGGCAGGACCCGG
CGTCGGCGTTCGTCGGGTACCACGCGGTCCTGATCGTCGGGTGGTGCGAC
GCGAGGGTCAACTCCGCGGAGCCCGGCTTCGACGGCGCGTACTGGGTGAT
CAAGTCGAGTTGGGGGCAGCACTGGGGGGTGCCCGAGGGCGTACGCTCGG
GCTACGCGTACGTCGCCATGGGGGAGAACATCGCGGAAGTCGAATCGAGG
GCGAGCGTGGCGACGGCGGTCCTGCCGGACGGGTTCGCGGAGGCCGAGGG
CTGGCAGAAGCGCACCGCCTACTGGTCCTACGACGACTACGCGCGGGACC
CGGACAGGGACAACTTCCTGGGGGCGGTCGCAAGGGCGCACGCCGAGCAG
AGGGGGGCCCGGGAGAAGGGGGATCCCAAGCCCTAG
back to top

Coding sequence (CDS) from alignment at Contig_41:995562..996647-

>mRNA_4541 ID=mRNA_4541|Name=jgi.p|Trimin1|166050|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1086bp|location=Sequence derived from alignment at Contig_41:995562..996647- (Tribonema minus UTEX_B_3156 )
ATGGCGTCGTCGTCGTCGCGCCGCCCCGCCGCCAGGGCCGCGGAGGCCGC
GCTGCCCGCCGCCGCCGCGCTCGTCCTCGCGTACGCGTGGGCGGGCAGGC
AGAGGGCCCCGCGGATCCCCCGACTGTTCGGCGCGTCAGCGTCCGAACCC
CTGCCGAGCTACTTCAAGTACCACGAGGCCCTGCTGAACCCCCCCCGGGA
CCAGCTGGGGTGCGCCTCCTGCTGGGCCTTCGCCGTCTGCGACATGGCGG
CGGACGCCCTGAACCTCAGGACGGAGGGGGCCTGGGGGGTCCGTCCCCTG
AGCCCACAGTACCTGCTGTCCTGCGCCCCGGGGCTGACGCAGAGCTGCGA
GGAGGGGGGCATCCCGGAGGAGGCGCTGGAGTCCCCCGCGGCGACGTCCG
AGGGGGGGGGCATCCCCCTCGAGTCGGAGGTGCCCTACAGGGCGGACGAG
GGGCCGTGCGCCGCGTCGTCCGCTCGGCCGTCGCCCGGCGGCGTCCGCGT
GCGCATCGCCCCCGGGTCCTCCCTCTCCCTGTGCGACGACCCCTCCCTCG
CCCTCCCCGGCATGAGGGGGGCGACCGTCAAGCGCAACGTCGCCAACATG
AAGCGCGCGATCATGAGGCACGGCCCCGTCGTCGGCACCCTCAGGGTGAC
CGAGGACCTGTACGACTACGCGGCGTCGGAGATATACAGGCAGGACCCGG
CGTCGGCGTTCGTCGGGTACCACGCGGTCCTGATCGTCGGGTGGTGCGAC
GCGAGGGTCAACTCCGCGGAGCCCGGCTTCGACGGCGCGTACTGGGTGAT
CAAGTCGAGTTGGGGGCAGCACTGGGGGGTGCCCGAGGGCGTACGCTCGG
GCTACGCGTACGTCGCCATGGGGGAGAACATCGCGGAAGTCGAATCGAGG
GCGAGCGTGGCGACGGCGGTCCTGCCGGACGGGTTCGCGGAGGCCGAGGG
CTGGCAGAAGCGCACCGCCTACTGGTCCTACGACGACTACGCGCGGGACC
CGGACAGGGACAACTTCCTGGGGGCGGTCGCAAGGGCGCACGCCGAGCAG
AGGGGGGCCCGGGAGAAGGGGGATCCCAAGCCCTAG
back to top