mRNA_4524 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|147880
Unique Name	mRNA_4524
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|147880 vs. uniprot

BLAST of jgi.p|Trimin1|147880 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_41	contig	Contig_41:944687..945987 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|147880\|gw1.41.130.1
Hectar predicted targeting category	other localisation
TranscriptId	148202
Track	FilteredModels1
ProteinId	147880

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|147880	gene_4524	Tribonema minus UTEX_B_3156	gene	Contig_41 944687..945987 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|147880	Trimin1\|147880\|gw1.41.130.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_41 944687..945987 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_4524_3	exon_4524_3	Tribonema minus UTEX_B_3156	exon	Contig_41 944687..944989 -
exon_4524_2	exon_4524_2	Tribonema minus UTEX_B_3156	exon	Contig_41 945281..945592 -
exon_4524_1	exon_4524_1	Tribonema minus UTEX_B_3156	exon	Contig_41 945892..945987 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_4524	CDS_4524	Tribonema minus UTEX_B_3156	CDS	Contig_41 945892..945987 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_41:944687..945987-
coding sequence from alignment at Contig_41:944687..945987-

spliced messenger RNA

>mRNA_4524 ID=mRNA_4524|Name=jgi.p|Trimin1|147880|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=711bp|location=Sequence derived from alignment at Contig_41:944687..945987- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTATCAGCAACACAAGTGGAATCAGTGCTACCAGAGCTATCAGCAACACA
AGTGGGATCAGTGCTACCAGCGCTATCAGCAACACAAGTGGAATCTCTAT
CAGCAACACAAGTGCTACCAGTGCTACCAGAGCTATCAGCAACACAAGTG
CTACCAGTGCTACCAGGGCTATCAGCAACACAAGTGCTACCAGTGCTACC
AGGGCTATCAGCACCACAAGTGGAATCAGTGCTACCAGGGCTATCAGCAA
CACAAGTGGAATCAGTGCTACCAGCGCTATCAGCAACACAAGTGGAATCA
GTGCTACCAGGGCTATCAGCAACACAAGTGGAATCAGTGCTACCAGGGCT
ATCAGCAACTCAAGTGGAATCAGTGCTACCAGGGCTATCAGCAACGCAAG
TGGAATCACTATCAGCAACACAAGTGCTACCAGTGCTACCAGGGCTATCA
GCAACACAAGTGCTACCAGTGCTACCAGGGCTATCAGCAACACAAGTGGA
ATCAGTGCTACCAGGGCTATCAGCAACACAAGTGGAATCAGTGCTACCAG
CGCTATCAGCAACACAAGTGGAATCAGTGCTACCAGGGCTATCAGCAACA
CAAGTGGAATCAGTGCTACCAGGGCTATCAGCAACACAAGTGGAATCAGT
GCTACCAGGGCTATCAGCAACTCAAATGGAATCAGTGCTACCAGGGCTAT
CAGCAACGCAA

protein sequence of jgi.p|Trimin1|147880

>Trimin1|147880|gw1.41.130.1 ID=Trimin1|147880|gw1.41.130.1|Name=jgi.p|Trimin1|147880|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=237bp
LSATQVESVLPELSATQVGSVLPALSATQVESLSATQVLPVLPELSATQV
LPVLPGLSATQVLPVLPGLSAPQVESVLPGLSATQVESVLPALSATQVES
VLPGLSATQVESVLPGLSATQVESVLPGLSATQVESLSATQVLPVLPGLS
ATQVLPVLPGLSATQVESVLPGLSATQVESVLPALSATQVESVLPGLSAT
QVESVLPGLSATQVESVLPGLSATQMESVLPGLSATQ

mRNA from alignment at Contig_41:944687..945987-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4524 ID=mRNA_4524|Name=jgi.p|Trimin1|147880|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1301bp|location=Sequence derived from alignment at Contig_41:944687..945987- (Tribonema minus UTEX_B_3156 )
CTATCAGCAACACAAGTGGAATCAGTGCTACCAGAGCTATCAGCAACACA
AGTGGGATCAGTGCTACCAGCGCTATCAGCAACACAAGTGGAATCTGTGC
TACCAGTGTTGCCAGTCCAACCAGTGCTACCAGAGCAATCAGCGACACAA
GTGCTACCAGACTGACAGTGGTGCCAGTCCAACCAGTGCTACCACAGCAA
TCAGCAACACAACTGCTACCAGTGTTGCCAGTCCAACCAGTGGAATCAGT
GCTACCAGAGCTATCAGCAACACAAGTGCTACCAGTGCTACCAGAGCTAT
CAGCAACACAAGTGCTACCAGTGTCACCAGTCCAACCAGTGGAATAAGTG
CTACCAGAGCTATCAGCAACACAAGTGGAATCAGTGCTACCAGAGCTATC
AGCAACACAAGTGCTACCAGTGCTACCAGAGCTATCAGCAACACAAGTGC
TACCAGTGCTACCAGGGCTATCAGCAACACAAGTGCTACCAGTGCTACCA
GGGCTATCAGCACCACAAGTGGAATCAGTGCTACCAGGGCTATCAGCAAC
ACAAGTGGAATCAGTGCTACCAGCGCTATCAGCAACACAAGTGGAATCAG
TGCTACCAGGGCTATCAGCAACACAAGTGGAATCAGTGCTACCAGGGCTA
TCAGCAACTCAAGTGGAATCAGTGCTACCAGGGCTATCAGCAACGCAAGT
GGAATCAGTGCTACCAGGGCCATCAGCAACGCAAGTGGAATCAGTGCTAC
CAGAGCCATCAGCAACTCAAGTGCAATCAGTGCTACCAGAGCCATCAGCA
ACACAAGTGGAATCAGTGCTACCAGAGCTATCAGCAACACAAGTGGAATC
AGTGCTACCAGAGCTATCAGCAACACAAGTGCTACCAGTGTCACCAGTCC
AACCAGTGGAATCAGTGCTACCAGTGTTGCCAGTCTAACCAGTGGAACCA
GTGCTACCAGAGCTATCAGCAACACAAGTGCTACCAGTGCTACCAGAGCT
ATCAGCAACACAAGTGCTACCAGTGCTACCAGGGCTATCAGCAACACAAG
TGCTACCAGTGCTACCAGGGCTATCAGCAACACAAGTGGAATCAGTGCTA
CCAGGGCTATCAGCAACACAAGTGGAATCAGTGCTACCAGCGCTATCAGC
AACACAAGTGGAATCAGTGCTACCAGGGCTATCAGCAACACAAGTGGAAT
CAGTGCTACCAGGGCTATCAGCAACACAAGTGGAATCAGTGCTACCAGGG
CTATCAGCAACTCAAATGGAATCAGTGCTACCAGGGCTATCAGCAACGCA
A

Coding sequence (CDS) from alignment at Contig_41:944687..945987-

>mRNA_4524 ID=mRNA_4524|Name=jgi.p|Trimin1|147880|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=711bp|location=Sequence derived from alignment at Contig_41:944687..945987- (Tribonema minus UTEX_B_3156 )
CTATCAGCAACACAAGTGGAATCAGTGCTACCAGAGCTATCAGCAACACA
AGTGGGATCAGTGCTACCAGCGCTATCAGCAACACAAGTGGAATCTCTAT
CAGCAACACAAGTGCTACCAGTGCTACCAGAGCTATCAGCAACACAAGTG
CTACCAGTGCTACCAGGGCTATCAGCAACACAAGTGCTACCAGTGCTACC
AGGGCTATCAGCACCACAAGTGGAATCAGTGCTACCAGGGCTATCAGCAA
CACAAGTGGAATCAGTGCTACCAGCGCTATCAGCAACACAAGTGGAATCA
GTGCTACCAGGGCTATCAGCAACACAAGTGGAATCAGTGCTACCAGGGCT
ATCAGCAACTCAAGTGGAATCAGTGCTACCAGGGCTATCAGCAACGCAAG
TGGAATCACTATCAGCAACACAAGTGCTACCAGTGCTACCAGGGCTATCA
GCAACACAAGTGCTACCAGTGCTACCAGGGCTATCAGCAACACAAGTGGA
ATCAGTGCTACCAGGGCTATCAGCAACACAAGTGGAATCAGTGCTACCAG
CGCTATCAGCAACACAAGTGGAATCAGTGCTACCAGGGCTATCAGCAACA
CAAGTGGAATCAGTGCTACCAGGGCTATCAGCAACACAAGTGGAATCAGT
GCTACCAGGGCTATCAGCAACTCAAATGGAATCAGTGCTACCAGGGCTAT
CAGCAACGCAA