mRNA_4510 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|166005
Unique NamemRNA_4510
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|166005 vs. uniprot
Match: A0A836CCV2_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCV2_9STRA)

HSP 1 Score: 597 bits (1539), Expect = 5.240e-216
Identity = 289/289 (100.00%), Postives = 289/289 (100.00%), Query Frame = 1
Query:    1 MHVIDLFCGAGGFSTGAAQEGAVVVLAVDGWRDALDVHAANHPGALHWCETLGGPPAEFAERLRGVIAEAVPPGEQVHLHASPPCQNLSQVNAGRDEGVGLALVAWCFELVDLVRPDSWTVEQVPNAALLRRFAHVPHGVYDMAAHGVPQTRRRVIFGHAPRLEEEGRASFEDALRGAGLDAGGHDEQCNGSIKKRGEGGEAIYYRRSLRDPSYTVTARFPVFVRGRADMTSLDVRLAAALQGFPPGYFPPDTPRVRQMIGNALPPPFARRLVRSAPGRRRPPAGHVKM 867
            MHVIDLFCGAGGFSTGAAQEGAVVVLAVDGWRDALDVHAANHPGALHWCETLGGPPAEFAERLRGVIAEAVPPGEQVHLHASPPCQNLSQVNAGRDEGVGLALVAWCFELVDLVRPDSWTVEQVPNAALLRRFAHVPHGVYDMAAHGVPQTRRRVIFGHAPRLEEEGRASFEDALRGAGLDAGGHDEQCNGSIKKRGEGGEAIYYRRSLRDPSYTVTARFPVFVRGRADMTSLDVRLAAALQGFPPGYFPPDTPRVRQMIGNALPPPFARRLVRSAPGRRRPPAGHVKM
Sbjct:    1 MHVIDLFCGAGGFSTGAAQEGAVVVLAVDGWRDALDVHAANHPGALHWCETLGGPPAEFAERLRGVIAEAVPPGEQVHLHASPPCQNLSQVNAGRDEGVGLALVAWCFELVDLVRPDSWTVEQVPNAALLRRFAHVPHGVYDMAAHGVPQTRRRVIFGHAPRLEEEGRASFEDALRGAGLDAGGHDEQCNGSIKKRGEGGEAIYYRRSLRDPSYTVTARFPVFVRGRADMTSLDVRLAAALQGFPPGYFPPDTPRVRQMIGNALPPPFARRLVRSAPGRRRPPAGHVKM 289          
BLAST of jgi.p|Trimin1|166005 vs. uniprot
Match: A0A835YWN5_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWN5_9STRA)

HSP 1 Score: 274 bits (701), Expect = 1.300e-88
Identity = 153/283 (54.06%), Postives = 183/283 (64.66%), Query Frame = 1
Query:    1 MHVIDLFCGAGGFSTGAAQEGAVVVLAVDGWRDALDVHAANHPGALHWCETLGGPPAEFAERLRGVIAEAVPPGEQVHLHASPPCQNLSQVNAGRDEGVGLALVAWCFELVDLVRPDSWTVEQVPNAALLRRFAHVPHGVYDMAAHGVPQTRRRVIFGHAPRLEEEGRASFEDALR---GAGLDAGGHDEQCNGSIKKRGEGGEAIYYRRSLRDPSYTVTARFPV-FVRGRADMTSLDVRLAAALQGFPPGY-FPPDTPRVRQMIGNALPPPFARRLVRSAPG 834
            ++VIDLFCGAGGFS GA++ GAVV+LAVD W+ ALDVHAANH    HW E LGG PA+F  RLR V++  VP G  VHLH SPPCQNLS VN  R+E  G+ LV W F + DL++PDS+TVEQVPNAALLR + H+PH VY M+ HG+PQ+RRRVIFG+AP+L     A     LR    AG  A     +C G+           Y  R L+D SYTVT  FPV F  GR  MT L + +   LQ FPP Y +     + R MI NALPP FAR+LVR   G
Sbjct:    2 IYVIDLFCGAGGFSEGASRAGAVVILAVDCWKAALDVHAANHGDCEHWNEPLGGDPAQFVARLRRVVSRRVPCGGLVHLHGSPPCQNLSSVNCMRNEREGMRLVEWTFAVGDLLQPDSFTVEQVPNAALLREYGHLPHSVYAMSEHGIPQSRRRVIFGNAPQLPRSSGADIGTILRRCDAAGCSAFAAGHRCRGA-----------YVTRRLQDVSYTVTRNFPVMFDDGR--MTKLPLTVMRELQTFPPSYKWHGSIGQQRIMIANALPPKFARQLVRHLEG 271          
BLAST of jgi.p|Trimin1|166005 vs. uniprot
Match: A0A836CNB4_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNB4_9STRA)

HSP 1 Score: 242 bits (617), Expect = 1.730e-75
Identity = 136/285 (47.72%), Postives = 171/285 (60.00%), Query Frame = 1
Query:    1 MHVIDLFCGAGGFSTGAAQEGAVVVLAVDGWRDALDVHAANHPGALHWCETLGGPPAEFAERLRGVIAEAVPPGEQVHLHASPPCQNLSQVNAGRDEGVGLALVAWCFELVDLVRPDSWTVEQVPNAALLRRFAHVPHGVYDMAAHGVPQTRRRVIFGHAPRLEEEGRASFEDALRGAGLDAGGHDEQCNGSIKKRGEG-GEA-------IYYRRSLRDPSYTVTARFPVFVRGRADMTSLDVRLAAALQGFPPGYFPPDTPR---VRQMIGNALPPPFARRLVR 822
            ++VIDLFCGAGGFS GA + GA V+LAVD W+ ALDVHA NHP   HW E LG  P EFA+RLR VIA+  PPG +VHLHASPPCQNL   N  R E  G+ LV W F + + +   + TVEQV +  LLR ++H+PH VYDM+ HGVPQ R RVIFG AP L         + L   G      D Q NG+++K  +G G A       +Y R SL   S TVT+ +P  +R    + +L  R+   LQ F   YFP  T +    R+MI N++PP  A  L+R
Sbjct:    2 LYVIDLFCGAGGFSEGARRAGATVILAVDCWQMALDVHALNHPDVEHWLEELGEDPREFADRLRRVIADKAPPGGRVHLHASPPCQNLCGANRRRSEDEGMRLVEWSFRVAEALGSVTVTVEQVASPVLLRAYSHLPHRVYDMSEHGVPQIRTRVIFGDAPELPILDEIPLREVLSRCGCAVTTGDMQTNGTVRKGRKGKGTARKPTRPPVYQRASLDAVSRTVTSCYPSLLRSER-LVTLPNRVVCELQTFDAAYFPLATLKKGVARRMIANSVPPVLAASLIR 285          
BLAST of jgi.p|Trimin1|166005 vs. uniprot
Match: A0A836CEM3_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEM3_9STRA)

HSP 1 Score: 226 bits (577), Expect = 1.410e-69
Identity = 129/275 (46.91%), Postives = 159/275 (57.82%), Query Frame = 1
Query:    1 MHVIDLFCGAGGFSTGAAQEGAVVVLAVDGWRDALDVHAANHPGALHWCETLGGPPAEFAERLRGVIAEAVPPGEQVHLHASPPCQNLSQVNAGRDEGVGLALVAWCFELVDLVRPDSWTVEQVPNAALLRRFAHVPHGVYDMAAHGVPQTRRRVIFGHAPRLEEEGRASFEDALRGAGLDAGGHDEQCNGSIKKRGEGGEAIYYRRSLRDPSYTVTARFPVFVRGRADMTSLDVRLAAALQGFPPGYFPPDTPRV-RQMIGNALPPPFARRLVR 822
            M+VID+F G GGF+ GA Q GA V+LAVD W++ALDVHA NHP   HW E +GG P+ FA RLR V    VP GE +H+H SPPCQ LS VN  R+E  GLALV W F++ +L+ PDS+TVEQV N  LLR +AH+PH +Y M  HG+PQTR RV+FG AP L           L    +  G      N       +     Y  R L   S+TVT   P   R     T L + + A LQ F   YF      V R++IGNA+PP FA  +VR
Sbjct:    1 MYVIDVFSGCGGFTQGAKQAGATVILAVDSWKEALDVHALNHPETEHWHEVVGGDPSLFAGRLRAVADLKVPSGEHLHVHFSPPCQQLSGVNHSRNELKGLALVEWSFQVAELLCPDSFTVEQVRNPFLLRTYAHLPHRIYKMCEHGIPQTRVRVLFGDAPALPFAPAEPILSFLNDVNILPGTCITNHNMKRVLGKKSNPIAYATRDLSQTSFTVTRAQPQLYRNMK-ATILPIEVVARLQTFDANYFAGLKMCVARRLIGNAVPPSFAELVVR 274          
BLAST of jgi.p|Trimin1|166005 vs. uniprot
Match: A0A835Z4N3_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4N3_9STRA)

HSP 1 Score: 223 bits (567), Expect = 6.080e-66
Identity = 126/285 (44.21%), Postives = 157/285 (55.09%), Query Frame = 1
Query:    1 MHVIDLFCGAGGFSTGAAQEGAVVVLAVDGWRDALDVHAANHPGALHWCETLGGPPAEFAERLRGVIAEAVPPGEQVHLHASPPCQNLSQVNAGRDEGVGLALVAWCFELVDLVRPDSWTVEQVPNAALLRRFAHVPHGVYDMAAHGVPQTRRRVIFGHAPRLEEEGRASFEDALRGAGLDAGGHDEQCNGSIKKRGEGGEAIYYRRSLRDPSYTVTARFPVFVRGRA--DMTSLDVRLAAALQGFPP---GYFPPDTPRV--RQMIGNALPPPFARRLVRSAPG 834
              +++    + GFS GA Q GA VVLAVD WRDALD HA  H    HWCE LGG P+ FA+RLR  I   +P   +VH+HASPPCQNLS  N GRDE  GL LV W F + D +   S+T+EQV +  L+  + H+PH  YD++ HGVPQTR+RV+FG AP L  E   S  DAL   G  A    E    +           Y  RS+  P+YTVT + P      A  + + L +     LQ FP      FP     V  RQ I NA+PP FA+RL+ S  G
Sbjct:  201 QRLVNAIAESAGFSEGARQAGATVVLAVDSWRDALDAHAVMHLNCTHWCEELGGDPSRFAKRLRDFIGSDLPADARVHVHASPPCQNLSAANPGRDESEGLRLVEWTFSVFDRLTNCSFTLEQVSSRPLMEAYGHLPHVRYDLSNHGVPQTRKRVVFGDAPHLLAEPAVSMRDALTDGGA-ASRMTESARQTSHSIATSNPTTYKTRSVNQPAYTVTQQQPQIWHRHAVGECSMLSIPQLLVLQTFPKRCLDAFPVGMSAVQRRQAIANAVPPAFAKRLMASLAG 484          
BLAST of jgi.p|Trimin1|166005 vs. uniprot
Match: A0A835YX35_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX35_9STRA)

HSP 1 Score: 211 bits (537), Expect = 8.880e-65
Identity = 106/168 (63.10%), Postives = 121/168 (72.02%), Query Frame = 1
Query:    1 MHVIDLFCGAGGFSTGAAQEGAVVVLAVDGWRDALDVHAANH--PGAL--HWCETLGGPPAEFAERLRGVIAEAVPPGEQVHLHASPPCQNLSQVNAGRDEGVGLALVAWCFELVDLVRP-DSWTVEQVPNAALLRRFAHVPHGVYDMAAHGVPQTRRRVIFGHAPRL 489
            +++IDLFCGAGGFS GA Q GAVV+LAVD WR ALDVHAANH  P A   HWCE LGG P  FA RLR V++  VPPG  VHLHASPPCQNL   N  R EG GL LV W F+L++      S+TVEQV +  LLR + H+PH VYDM+ HGVPQ R+RVIFG AP L
Sbjct:    2 IYLIDLFCGAGGFSEGARQSGAVVILAVDRWRAALDVHAANHTTPSASCEHWCEELGGDPEAFATRLRHVVSRRVPPGGHVHLHASPPCQNLCGANTRRREGEGLRLVEWSFKLMECCAEFHSFTVEQVASPTLLRTYEHIPHRVYDMSVHGVPQIRKRVIFGDAPML 169          
BLAST of jgi.p|Trimin1|166005 vs. uniprot
Match: A0A835ZAI0_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAI0_9STRA)

HSP 1 Score: 211 bits (538), Expect = 8.220e-64
Identity = 137/287 (47.74%), Postives = 157/287 (54.70%), Query Frame = 1
Query:    7 VIDLFCGAGGFSTGAAQEGAVVVLAVDGWRDALDVHAANHPGALHWCETLGGPPAEFAERLRGVIAEAVPPGEQVHLHASPPCQNLSQVNAGRDEGVGLALVAWCFELVDLVRPDSWTVEQVPNAALLRRFAH--VPHGVYDMAAHGVPQTRRRVIFGHAPRLEEEGRASFEDALRGAGLD--AGGHDEQCNGSIKKRGEGGEAIYYRRSLRDPSYTVTARFPVFVRGRADMTS-LDVRLAAALQGFPPGYFP---PDTPRVRQMIGNALPPPFARRLVRSAPGRRR 843
            V+DLFCG GGFS GA Q GA V LAVD WR ALD HA+ HP A HWCE LGG  AEFA R+R     AVP G ++HLH SPPCQ LS +N G D   G+ LV W  ++VD +RP SWT+EQVP+ A+LR       P GV      GVP  RRRVI G         R +   A   AGL+  AGG      G +   G GG   Y  RSL   S TVT RFP      A  +  L  R   ALQ FP GY     P T   R MIGNA+ P  AR L+ +  G  R
Sbjct:   14 VVDLFCGIGGFSEGARQAGASVALAVDSWRAALDAHASRHPEAEHWCEELGGDVAEFAGRVRA----AVPTGCRLHLHRSPPCQQLSSLNPGGDRVEGMRLVTWYLDVVDALRPHSWTMEQVPHPAVLRLLTERRAPFGVLRFDEFGVPTARRRVIAGTVDFDALPRREAPPAARVLAGLEDMAGGFTRLTGGRVDVAGGGG---YVSRSLDLVSSTVTRRFPCLYDPEARRSKMLRPRSLLALQSFPRGYLDAAAPGTEDARLMIGNAVSPALARALMTAVCGGER 293          
BLAST of jgi.p|Trimin1|166005 vs. uniprot
Match: A0A836CDD9_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDD9_9STRA)

HSP 1 Score: 192 bits (489), Expect = 1.280e-56
Identity = 129/290 (44.48%), Postives = 153/290 (52.76%), Query Frame = 1
Query:    1 MHVIDLFCGAGGFSTGAAQEGAVVVLAVDGWRDALDVHAANHPGALHWCETLGGPPAEFAERLRGVIAEAVPPGEQVHLHASPPCQNLSQVNAGRDEGVGLALVAWCFELVDLVRPDSWTVEQVPNAALLR--RFAHVPHGVYDMAAHGVPQTRRRVIFGHAP--RLEEEGRASFEDALRGAGLDAGGHDEQCNGSIKKRGEGGEAIYYRRSLRDPSYTVTARFPVFV---RGRADMTSLDVRLAAALQGFPPGYFPPD--TPRVRQMIGNALPPPFARRLVRSAPGRRR 843
            + V+DLFCG  GFS GAAQ GA VVLAVD W  ALD HA+ HP ALHW E LGG  AEFA R+R V+    PPG ++H+H SPPCQ LS +  G D   GL LV W   LVD + PDSWT+EQVP+ A+L   R    P  V     +GVP  RRR I G      L  +   S    +     D        +G+ + RGEG       RSL   S TVT   P  +   R R  M  L   LA  LQ FPP +          R MIGNA+ P  A  L+R+A GR R
Sbjct:    2 LAVVDLFCGIRGFSEGAAQAGASVVLAVDSWASALDAHASRHPEALHWREELGGDVAEFAARVRAVV----PPGARLHMHGSPPCQQLSSLKQGGDRVEGLRLVTWYLNLVDALAPDSWTMEQVPHPAVLALLRERGAPFRVLRFDDYGVPNRRRRAIAGTVDFDALRRKPAPSARSVVS-PHEDISAFSALTDGNTRGRGEGPVP----RSLGLVSTTVTRSHPRLLDQSRRRTKMLGLPALLA--LQSFPPDFSTAGLRVEDARTMIGNAVSPAVALELIRAAAGRPR 280          
BLAST of jgi.p|Trimin1|166005 vs. uniprot
Match: A0A836CC81_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC81_9STRA)

HSP 1 Score: 187 bits (474), Expect = 8.410e-55
Identity = 116/233 (49.79%), Postives = 141/233 (60.52%), Query Frame = 1
Query:    1 MHVIDLFCGAGGFSTGAAQEGAVVVLAVDGWRDALDVHAANHPGALHWCETLG-GPPAEFAERLRGVIAEAVPPGEQVHLHASPPCQNLSQVN-AGRDEGVGLALVAWCFELVDLVRPDSWTVEQVPNAALLRRFAHVPHGVYDMAAH---GVPQTRRRVIFGHAPRLEE-----EGRASFEDALRGAGLDAG-GHDEQCNGSIKKRGEGGEAIYYRRSLRDPSYTVTARFPV 666
            +HVIDLFCGAGGFS GA Q GAVVVLAVD WR+ALDVHAANHP A HWCE +G G PAE A+RLR   A A+PPG  VHLHASPPCQ+LS+ N A RD   GL L  +  ++++  R DSWTVEQV +A  +R        +Y   A    GVP  RRR+I   +  LE+     +   +   A+  A + A  G + Q +GS K           RR L D SYTVT R P+
Sbjct:    2 LHVIDLFCGAGGFSEGARQAGAVVVLAVDCWREALDVHAANHPDAEHWCEEIGTGDPAELAQRLRAFAANALPPGAPVHLHASPPCQSLSKANRASRDTSGGLRLTRFALDVIEAARFDSWTVEQV-SAPAVRGLFDARGVLYRHLACDKLGVPSIRRRLIAA-SETLEDMQECIDRPLTLRQAMDRADMSAPPGFEVQRDGSTKDT---------RRRLDDVSYTVTTRSPI 223          
BLAST of jgi.p|Trimin1|166005 vs. uniprot
Match: A0A835Z6C7_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6C7_9STRA)

HSP 1 Score: 185 bits (469), Expect = 1.850e-53
Identity = 123/288 (42.71%), Postives = 158/288 (54.86%), Query Frame = 1
Query:    1 MHVIDLFCGAGGFSTGAAQEGAVVVLAVDGWRDALDVHAANHPGALHWCETLGGPPAEFAERLRGVIAEAVPPGEQVHLHASPPCQNLSQVN-AGRDEGVGLALVAWCFELVDLVRPDSWTVEQVPNAALLR-------RFAHVPHGVYDMAAHGVPQTRRRVIFGHAPRLEE-----EGRASFEDALRGAGLDAG-GHDEQCNGSIKKRGEGGEAIYYRRSLRDPSYTVTARFPVFVRGRADMT-SLDVRLAAALQGFPPGYFPPDTPRVRQMIGNALPPPFARRLV 819
            M+VIDLF GAGGFS GA Q GAVV+LAVD W+ ALDVHAANH    HW E +GG PAE A RLR  I   VP G+ VH+HASPPCQ LS+ N + RD  VGL L  +  ++V  V   SWT+EQV   A+ +       ++ H+    Y     GVP  RRR+I    P L++         +  + +  AG+    G+D Q +GS K           RR L D SYTVT R PV          +L   + + LQ FPPGY        ++M+ NA+PP  +RRL+
Sbjct:    2 MYVIDLFSGAGGFSEGARQAGAVVILAVDCWQAALDVHAANHLDCHHWREEVGGHPAELAGRLRAFIGANVPAGQLVHVHASPPCQRLSKANRSSRDTDVGLRLTRFALDVVQAVGCHSWTIEQVSAPAVRKLMDDRGVKYRHLHFDKY-----GVPSIRRRLIASSVP-LDDLPVCVAPPLTLREVMTVAGMQPPEGYDAQRDGSSKPT---------RRRLDDTSYTVTTRAPVLWNDALGKELALPHVVRSLLQTFPPGY--KFGKHSKKMVANAVPPEMSRRLL 272          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|166005 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CCV2_9STRA5.240e-216100.00S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A835YWN5_9STRA1.300e-8854.06S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A836CNB4_9STRA1.730e-7547.72S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A836CEM3_9STRA1.410e-6946.91S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A835Z4N3_9STRA6.080e-6644.21S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A835YX35_9STRA8.880e-6563.10S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A835ZAI0_9STRA8.220e-6447.74S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A836CDD9_9STRA1.280e-5644.48S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A836CC81_9STRA8.410e-5549.79S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A835Z6C7_9STRA1.850e-5342.71S-adenosyl-L-methionine-dependent methyltransferas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_41contigContig_41:901552..902421 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|166005|e_gw1.41.55.1
BRITEko00000,ko00001,ko00002,ko01000,ko02048,ko03032,ko03036
KEGG rclassRC00003,RC00332
KEGG ReactionR04858
KEGG ModuleM00035
KEGG Pathwayko00270,ko01100,ko05206,map00270,map01100,map05206
KEGG koko:K00558
EC2.1.1.37
DescriptionC-5 cytosine-specific DNA methylase
COG categoryH
Max annot lvl1236|Gammaproteobacteria
EggNOG OGsCOG0270@1|root,COG0270@2|Bacteria,1MV9D@1224|Proteobacteria,1T9QR@1236|Gammaproteobacteria,3FIKT@34037|Rahnella
Evalue8.34e-17
Seed ortholog745277.GRAQ_02364
Hectar predicted targeting categoryother localisation
TranscriptId166327
TrackFilteredModels1
ProteinId166005
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166005gene_4510Tribonema minus UTEX_B_3156 geneContig_41 901552..902421 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4510_1exon_4510_1Tribonema minus UTEX_B_3156 exonContig_41 901552..902421 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4510CDS_4510Tribonema minus UTEX_B_3156 CDSContig_41 901552..902421 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166005Trimin1|166005|e_gw1.41.55.1Tribonema minus UTEX_B_3156 polypeptideContig_41 901552..902421 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4510 ID=mRNA_4510|Name=jgi.p|Trimin1|166005|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=870bp|location=Sequence derived from alignment at Contig_41:901552..902421+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCACGTGATCGACCTGTTCTGCGGTGCGGGGGGCTTCAGCACGGGAGC
TGCTCAGGAAGGGGCCGTCGTCGTCCTTGCGGTCGACGGCTGGAGGGACG
CCCTCGACGTGCACGCCGCCAACCACCCCGGGGCCCTCCACTGGTGCGAG
ACTCTGGGGGGACCCCCCGCGGAGTTCGCGGAGCGGCTCAGGGGGGTCAT
CGCCGAGGCCGTACCGCCCGGGGAACAAGTCCACCTACACGCGTCCCCCC
CGTGCCAGAACCTGTCGCAGGTCAACGCGGGGAGGGACGAGGGCGTCGGC
CTCGCCCTGGTGGCGTGGTGCTTCGAGCTGGTCGACCTCGTGCGCCCCGA
CAGCTGGACGGTTGAGCAGGTGCCGAACGCCGCCCTGCTGAGGCGGTTCG
CGCACGTCCCGCACGGGGTCTACGACATGGCCGCCCACGGAGTCCCGCAG
ACGCGGAGGCGCGTCATCTTCGGCCACGCTCCCCGCCTTGAAGAGGAGGG
GCGCGCGTCCTTCGAGGACGCGCTGCGCGGCGCGGGCCTAGACGCGGGGG
GGCACGACGAGCAGTGCAACGGCAGCATAAAGAAGAGAGGAGAGGGCGGG
GAGGCCATATATTACAGGCGGTCCCTGCGGGACCCCTCCTACACCGTGAC
CGCGCGCTTCCCGGTGTTCGTCCGGGGGAGGGCGGACATGACTTCGCTCG
ACGTGCGCCTCGCGGCGGCTCTGCAGGGCTTCCCCCCGGGCTACTTCCCC
CCCGACACGCCCCGCGTGCGGCAGATGATAGGCAACGCGCTGCCGCCTCC
GTTCGCCCGTCGCCTCGTGCGCTCCGCGCCGGGCCGCCGTCGGCCGCCCG
CGGGCCACGTAAAGATGTGA
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protein sequence of jgi.p|Trimin1|166005

>Trimin1|166005|e_gw1.41.55.1 ID=Trimin1|166005|e_gw1.41.55.1|Name=jgi.p|Trimin1|166005|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=290bp
MHVIDLFCGAGGFSTGAAQEGAVVVLAVDGWRDALDVHAANHPGALHWCE
TLGGPPAEFAERLRGVIAEAVPPGEQVHLHASPPCQNLSQVNAGRDEGVG
LALVAWCFELVDLVRPDSWTVEQVPNAALLRRFAHVPHGVYDMAAHGVPQ
TRRRVIFGHAPRLEEEGRASFEDALRGAGLDAGGHDEQCNGSIKKRGEGG
EAIYYRRSLRDPSYTVTARFPVFVRGRADMTSLDVRLAAALQGFPPGYFP
PDTPRVRQMIGNALPPPFARRLVRSAPGRRRPPAGHVKM*
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mRNA from alignment at Contig_41:901552..902421+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4510 ID=mRNA_4510|Name=jgi.p|Trimin1|166005|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=870bp|location=Sequence derived from alignment at Contig_41:901552..902421+ (Tribonema minus UTEX_B_3156 )
ATGCACGTGATCGACCTGTTCTGCGGTGCGGGGGGCTTCAGCACGGGAGC TGCTCAGGAAGGGGCCGTCGTCGTCCTTGCGGTCGACGGCTGGAGGGACG CCCTCGACGTGCACGCCGCCAACCACCCCGGGGCCCTCCACTGGTGCGAG ACTCTGGGGGGACCCCCCGCGGAGTTCGCGGAGCGGCTCAGGGGGGTCAT CGCCGAGGCCGTACCGCCCGGGGAACAAGTCCACCTACACGCGTCCCCCC CGTGCCAGAACCTGTCGCAGGTCAACGCGGGGAGGGACGAGGGCGTCGGC CTCGCCCTGGTGGCGTGGTGCTTCGAGCTGGTCGACCTCGTGCGCCCCGA CAGCTGGACGGTTGAGCAGGTGCCGAACGCCGCCCTGCTGAGGCGGTTCG CGCACGTCCCGCACGGGGTCTACGACATGGCCGCCCACGGAGTCCCGCAG ACGCGGAGGCGCGTCATCTTCGGCCACGCTCCCCGCCTTGAAGAGGAGGG GCGCGCGTCCTTCGAGGACGCGCTGCGCGGCGCGGGCCTAGACGCGGGGG GGCACGACGAGCAGTGCAACGGCAGCATAAAGAAGAGAGGAGAGGGCGGG GAGGCCATATATTACAGGCGGTCCCTGCGGGACCCCTCCTACACCGTGAC CGCGCGCTTCCCGGTGTTCGTCCGGGGGAGGGCGGACATGACTTCGCTCG ACGTGCGCCTCGCGGCGGCTCTGCAGGGCTTCCCCCCGGGCTACTTCCCC CCCGACACGCCCCGCGTGCGGCAGATGATAGGCAACGCGCTGCCGCCTCC GTTCGCCCGTCGCCTCGTGCGCTCCGCGCCGGGCCGCCGTCGGCCGCCCG CGGGCCACGTAAAGATGTGA
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Coding sequence (CDS) from alignment at Contig_41:901552..902421+

>mRNA_4510 ID=mRNA_4510|Name=jgi.p|Trimin1|166005|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=870bp|location=Sequence derived from alignment at Contig_41:901552..902421+ (Tribonema minus UTEX_B_3156 )
ATGCACGTGATCGACCTGTTCTGCGGTGCGGGGGGCTTCAGCACGGGAGC
TGCTCAGGAAGGGGCCGTCGTCGTCCTTGCGGTCGACGGCTGGAGGGACG
CCCTCGACGTGCACGCCGCCAACCACCCCGGGGCCCTCCACTGGTGCGAG
ACTCTGGGGGGACCCCCCGCGGAGTTCGCGGAGCGGCTCAGGGGGGTCAT
CGCCGAGGCCGTACCGCCCGGGGAACAAGTCCACCTACACGCGTCCCCCC
CGTGCCAGAACCTGTCGCAGGTCAACGCGGGGAGGGACGAGGGCGTCGGC
CTCGCCCTGGTGGCGTGGTGCTTCGAGCTGGTCGACCTCGTGCGCCCCGA
CAGCTGGACGGTTGAGCAGGTGCCGAACGCCGCCCTGCTGAGGCGGTTCG
CGCACGTCCCGCACGGGGTCTACGACATGGCCGCCCACGGAGTCCCGCAG
ACGCGGAGGCGCGTCATCTTCGGCCACGCTCCCCGCCTTGAAGAGGAGGG
GCGCGCGTCCTTCGAGGACGCGCTGCGCGGCGCGGGCCTAGACGCGGGGG
GGCACGACGAGCAGTGCAACGGCAGCATAAAGAAGAGAGGAGAGGGCGGG
GAGGCCATATATTACAGGCGGTCCCTGCGGGACCCCTCCTACACCGTGAC
CGCGCGCTTCCCGGTGTTCGTCCGGGGGAGGGCGGACATGACTTCGCTCG
ACGTGCGCCTCGCGGCGGCTCTGCAGGGCTTCCCCCCGGGCTACTTCCCC
CCCGACACGCCCCGCGTGCGGCAGATGATAGGCAACGCGCTGCCGCCTCC
GTTCGCCCGTCGCCTCGTGCGCTCCGCGCCGGGCCGCCGTCGGCCGCCCG
CGGGCCACGTAAAGATGTGA
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