mRNA_4505 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|165893
Unique NamemRNA_4505
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|165893 vs. uniprot
Match: A0A835Z135_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z135_9STRA)

HSP 1 Score: 154 bits (390), Expect = 2.700e-43
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1 
Query:    1 MINCLGSACVCGAARATFGAVGESATRCVKCRTDGMVDARAKRCPCGRQMNFGYPGDRLXXXXXXXXXXXXXXXXXXXXXXXKSVPHFGYPGSARSDASC 300
            MINCLGSACVCGAARATFGAVGESATRCVKCRTDGMVDARAKRCPCGRQMNFGYPGDRLXXXXXXXXXXXXXXXXXXXXXXXKSVPHFGYPGSARSDASC
Sbjct:    1 MINCLGSACVCGAARATFGAVGESATRCVKCRTDGMVDARAKRCPCGRQMNFGYPGDRLXXXXXXXXXXXXXXXXXXXXXXXKSVPHFGYPGSARSDASC 100
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|165893 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z135_9STRA2.700e-43100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_41contigContig_41:894666..895352 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|165893|e_gw1.41.66.1
Hectar predicted targeting categoryother localisation
TranscriptId166215
TrackFilteredModels1
ProteinId165893
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|165893gene_4505Tribonema minus UTEX_B_3156 geneContig_41 894666..895352 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4505_1exon_4505_1Tribonema minus UTEX_B_3156 exonContig_41 894666..895352 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4505CDS_4505Tribonema minus UTEX_B_3156 CDSContig_41 894666..895352 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|165893Trimin1|165893|e_gw1.41.66.1Tribonema minus UTEX_B_3156 polypeptideContig_41 894666..895352 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4505 ID=mRNA_4505|Name=jgi.p|Trimin1|165893|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=687bp|location=Sequence derived from alignment at Contig_41:894666..895352+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGATCAACTGTTTGGGGAGTGCGTGCGTGTGCGGCGCTGCCCGCGCCAC
CTTCGGCGCGGTCGGTGAGTCCGCCACGCGCTGCGTCAAGTGCAGGACAG
ACGGCATGGTCGACGCACGCGCTAAGAGATGCCCCTGCGGGAGGCAGATG
AATTTCGGCTACCCGGGAGACAGGCTGGCGTCGCGTTGCTCACAATGCAA
AGCAGAGGGCATGGTCAACGTCGTCAGTAGAAAGTGCGAGTGCGGCAAGA
GCGTCCCTCACTTCGGGTACCCGGGATCGGCGAGGAGCGATGCGTCCTGC
TGCAGGATGTGCAAACGGGACGGAATGGTCAACATCCGCAGCCGGAAGTG
CCAGTGCCGCAGAGCGGTCCCGAGCTACGGATTTCCGTCGGATTTGGTCG
CCACGTGCTGCCGGCACTGCAAGCGAGACGGGATGGTCAACATCGCCAGC
CGAAAGTGCTTCTGCGGCAGGGCGCAGCCCAGCCTGGGCTTCGACGGGGA
TGCGCGGCCCTCTCGGTGCGCGGTCTGCAAGGTGGACGGCATGGTCAACA
TCTCAAGTCCCAGGTGCGTTTGCGGGACGGCCATCGCGACTTTCGGCCTT
GCGTGGGACCTCAAGCGCACGTGCTGCTCGCGACGTATGACGTCCGACAT
GGTGGATCTCGTCAGCAGGAAGTGCGCGTGCGGGAAA
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protein sequence of jgi.p|Trimin1|165893

>Trimin1|165893|e_gw1.41.66.1 ID=Trimin1|165893|e_gw1.41.66.1|Name=jgi.p|Trimin1|165893|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=229bp
MINCLGSACVCGAARATFGAVGESATRCVKCRTDGMVDARAKRCPCGRQM
NFGYPGDRLASRCSQCKAEGMVNVVSRKCECGKSVPHFGYPGSARSDASC
CRMCKRDGMVNIRSRKCQCRRAVPSYGFPSDLVATCCRHCKRDGMVNIAS
RKCFCGRAQPSLGFDGDARPSRCAVCKVDGMVNISSPRCVCGTAIATFGL
AWDLKRTCCSRRMTSDMVDLVSRKCACGK
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mRNA from alignment at Contig_41:894666..895352+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4505 ID=mRNA_4505|Name=jgi.p|Trimin1|165893|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=687bp|location=Sequence derived from alignment at Contig_41:894666..895352+ (Tribonema minus UTEX_B_3156 )
ATGATCAACTGTTTGGGGAGTGCGTGCGTGTGCGGCGCTGCCCGCGCCAC
CTTCGGCGCGGTCGGTGAGTCCGCCACGCGCTGCGTCAAGTGCAGGACAG
ACGGCATGGTCGACGCACGCGCTAAGAGATGCCCCTGCGGGAGGCAGATG
AATTTCGGCTACCCGGGAGACAGGCTGGCGTCGCGTTGCTCACAATGCAA
AGCAGAGGGCATGGTCAACGTCGTCAGTAGAAAGTGCGAGTGCGGCAAGA
GCGTCCCTCACTTCGGGTACCCGGGATCGGCGAGGAGCGATGCGTCCTGC
TGCAGGATGTGCAAACGGGACGGAATGGTCAACATCCGCAGCCGGAAGTG
CCAGTGCCGCAGAGCGGTCCCGAGCTACGGATTTCCGTCGGATTTGGTCG
CCACGTGCTGCCGGCACTGCAAGCGAGACGGGATGGTCAACATCGCCAGC
CGAAAGTGCTTCTGCGGCAGGGCGCAGCCCAGCCTGGGCTTCGACGGGGA
TGCGCGGCCCTCTCGGTGCGCGGTCTGCAAGGTGGACGGCATGGTCAACA
TCTCAAGTCCCAGGTGCGTTTGCGGGACGGCCATCGCGACTTTCGGCCTT
GCGTGGGACCTCAAGCGCACGTGCTGCTCGCGACGTATGACGTCCGACAT
GGTGGATCTCGTCAGCAGGAAGTGCGCGTGCGGGAAA
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Coding sequence (CDS) from alignment at Contig_41:894666..895352+

>mRNA_4505 ID=mRNA_4505|Name=jgi.p|Trimin1|165893|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=687bp|location=Sequence derived from alignment at Contig_41:894666..895352+ (Tribonema minus UTEX_B_3156 )
ATGATCAACTGTTTGGGGAGTGCGTGCGTGTGCGGCGCTGCCCGCGCCAC
CTTCGGCGCGGTCGGTGAGTCCGCCACGCGCTGCGTCAAGTGCAGGACAG
ACGGCATGGTCGACGCACGCGCTAAGAGATGCCCCTGCGGGAGGCAGATG
AATTTCGGCTACCCGGGAGACAGGCTGGCGTCGCGTTGCTCACAATGCAA
AGCAGAGGGCATGGTCAACGTCGTCAGTAGAAAGTGCGAGTGCGGCAAGA
GCGTCCCTCACTTCGGGTACCCGGGATCGGCGAGGAGCGATGCGTCCTGC
TGCAGGATGTGCAAACGGGACGGAATGGTCAACATCCGCAGCCGGAAGTG
CCAGTGCCGCAGAGCGGTCCCGAGCTACGGATTTCCGTCGGATTTGGTCG
CCACGTGCTGCCGGCACTGCAAGCGAGACGGGATGGTCAACATCGCCAGC
CGAAAGTGCTTCTGCGGCAGGGCGCAGCCCAGCCTGGGCTTCGACGGGGA
TGCGCGGCCCTCTCGGTGCGCGGTCTGCAAGGTGGACGGCATGGTCAACA
TCTCAAGTCCCAGGTGCGTTTGCGGGACGGCCATCGCGACTTTCGGCCTT
GCGTGGGACCTCAAGCGCACGTGCTGCTCGCGACGTATGACGTCCGACAT
GGTGGATCTCGTCAGCAGGAAGTGCGCGTGCGGGAAA
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