mRNA_4479 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|132333
Unique NamemRNA_4479
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|132333 vs. uniprot
Match: A0A836CC70_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC70_9STRA)

HSP 1 Score: 162 bits (411), Expect = 1.330e-49
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 1 
Query:    1 QQHEGRLCYDACKPGYTGTLDRXXXXXXXXXXXXXXXXXXXXXXXWGMCVWWKGGTIQKTLFDRQSCPGPSEMYASLCYPKCKTGFHNVGAXXXXXXXXXXXXXXXXXXXXXXYYRGVGTP 363
            QQHEGRLCYDACKPGYTGTLDRXXXXXXXXXXXXXXXXXXXXXXXWGMCVWWKGGTIQKTLFDRQSCPGPSEMYASLCYPKCKTGFHNVGAXXXXXXXXXXXXXXXXXXXXXXYYRGVGTP
Sbjct:    1 QQHEGRLCYDACKPGYTGTLDRXXXXXXXXXXXXXXXXXXXXXXXWGMCVWWKGGTIQKTLFDRQSCPGPSEMYASLCYPKCKTGFHNVGAXXXXXXXXXXXXXXXXXXXXXXYYRGVGTP 121
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|132333 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CC70_9STRA1.330e-49100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_41contigContig_41:835349..835810 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|132333|gw1.41.11.1
Hectar predicted targeting categoryother localisation
TranscriptId132655
TrackFilteredModels1
ProteinId132333
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|132333gene_4479Tribonema minus UTEX_B_3156 geneContig_41 835349..835810 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4479_1exon_4479_1Tribonema minus UTEX_B_3156 exonContig_41 835349..835489 +
exon_4479_2exon_4479_2Tribonema minus UTEX_B_3156 exonContig_41 835589..835810 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4479CDS_4479Tribonema minus UTEX_B_3156 CDSContig_41 835349..835489 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|132333Trimin1|132333|gw1.41.11.1Tribonema minus UTEX_B_3156 polypeptideContig_41 835349..835810 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4479 ID=mRNA_4479|Name=jgi.p|Trimin1|132333|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=363bp|location=Sequence derived from alignment at Contig_41:835349..835810+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAACAGCACGAAGGCAGGTTGTGCTACGACGCCTGCAAGCCGGGCTACAC
GGGGACCCTCGACCGATGTTACAAGGACTGCCCGGCGGGGTTCGGCAACA
CCATCACGTCCTGCACGAAGCCCGCGTCCTACGGCTGGGGGATGTGCGTC
TGGTGGAAGGGGGGGACCATCCAGAAGACGCTTTTCGACCGCCAGAGCTG
CCCGGGGCCGAGTGAGATGTATGCATCCCTCTGCTATCCCAAGTGCAAGA
CCGGCTTCCACAACGTCGGCGCGAACGTGTGCTCGCCTGACTGCCCGGCG
GGCTATACCGATTTTGGCGTCGGATGTACGAAGCCGGACTACTACAGGGG
CGTCGGCACGCCC
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protein sequence of jgi.p|Trimin1|132333

>Trimin1|132333|gw1.41.11.1 ID=Trimin1|132333|gw1.41.11.1|Name=jgi.p|Trimin1|132333|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=121bp
QQHEGRLCYDACKPGYTGTLDRCYKDCPAGFGNTITSCTKPASYGWGMCV
WWKGGTIQKTLFDRQSCPGPSEMYASLCYPKCKTGFHNVGANVCSPDCPA
GYTDFGVGCTKPDYYRGVGTP
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mRNA from alignment at Contig_41:835349..835810+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4479 ID=mRNA_4479|Name=jgi.p|Trimin1|132333|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=462bp|location=Sequence derived from alignment at Contig_41:835349..835810+ (Tribonema minus UTEX_B_3156 )
CAACAGCACGAAGGCAGGTTGTGCTACGACGCCTGCAAGCCGGGCTACAC
GGGGACCCTCGACCGATGTTACAAGGACTGCCCGGCGGGGTTCGGCAACA
CCATCACGTCCTGCACGAAGCCCGCGTCCTACGGCTGGGGGGTTGGCAAG
ATGCCCACCAAGGGGCCCTGCGACGCGGGCCAGCGCGACGACGGCACCAG
CTGCTGGAGCCCCCTCACGTGCGCCAAGAAACTCGGCAAGATGTGCGTCT
GGTGGAAGGGGGGGACCATCCAGAAGACGCTTTTCGACCGCCAGAGCTGC
CCGGGGCCGAGTGAGATGTATGCATCCCTCTGCTATCCCAAGTGCAAGAC
CGGCTTCCACAACGTCGGCGCGAACGTGTGCTCGCCTGACTGCCCGGCGG
GCTATACCGATTTTGGCGTCGGATGTACGAAGCCGGACTACTACAGGGGC
GTCGGCACGCCC
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Coding sequence (CDS) from alignment at Contig_41:835349..835810+

>mRNA_4479 ID=mRNA_4479|Name=jgi.p|Trimin1|132333|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=363bp|location=Sequence derived from alignment at Contig_41:835349..835810+ (Tribonema minus UTEX_B_3156 )
CAACAGCACGAAGGCAGGTTGTGCTACGACGCCTGCAAGCCGGGCTACAC
GGGGACCCTCGACCGATGTTACAAGGACTGCCCGGCGGGGTTCGGCAACA
CCATCACGTCCTGCACGAAGCCCGCGTCCTACGGCTGGGGGATGTGCGTC
TGGTGGAAGGGGGGGACCATCCAGAAGACGCTTTTCGACCGCCAGAGCTG
CCCGGGGCCGAGTGAGATGTATGCATCCCTCTGCTATCCCAAGTGCAAGA
CCGGCTTCCACAACGTCGGCGCGAACGTGTGCTCGCCTGACTGCCCGGCG
GGCTATACCGATTTTGGCGTCGGATGTACGAAGCCGGACTACTACAGGGG
CGTCGGCACGCCC
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