mRNA_437 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|157451
Unique NamemRNA_437
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|157451 vs. uniprot
Match: A0A836CF06_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF06_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 2.250e-16
Identity = 322/322 (100.00%), Postives = 322/322 (100.00%), Query Frame = 1 
Query:    1 MLVKSLSVLNLSSCAGLARLPDSIGELAALTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLVSLLLKHIPIEXXXXXXXXXXXXXNLQVEGCRAVRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWRLKRLTRIYADGCQLSVKRTADVMALKNRCIRRG 966
            MLVKSLSVLNLSSCAGLARLPDSIGELAALTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLVSLLLKHIPIEXXXXXXXXXXXXXNLQVEGCRAVRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWRLKRLTRIYADGCQLSVKRTADVMALKNRCIRRG
Sbjct:    1 MLVKSLSVLNLSSCAGLARLPDSIGELAALTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLVSLLLKHIPIEXXXXXXXXXXXXXNLQVEGCRAVRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWRLKRLTRIYADGCQLSVKRTADVMALKNRCIRRG 322
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|157451 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CF06_9STRA2.250e-16100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_3contigContig_3:1514134..1515102 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|157451|e_gw1.3.142.1
Hectar predicted targeting categoryother localisation
TranscriptId157773
TrackFilteredModels1
ProteinId157451
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157451gene_437Tribonema minus UTEX_B_3156 geneContig_3 1514134..1515102 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_437_1exon_437_1Tribonema minus UTEX_B_3156 exonContig_3 1514134..1515102 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_437CDS_437Tribonema minus UTEX_B_3156 CDSContig_3 1514134..1515102 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157451Trimin1|157451|e_gw1.3.142.1Tribonema minus UTEX_B_3156 polypeptideContig_3 1514134..1515102 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_437 ID=mRNA_437|Name=jgi.p|Trimin1|157451|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=969bp|location=Sequence derived from alignment at Contig_3:1514134..1515102- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGGTGAAGTCGCTGTCGGTGCTCAATCTCAGCAGCTGCGCGGGCCT
GGCGCGCCTGCCTGACAGCATCGGCGAGCTGGCGGCGCTGACGGCACTCG
ACGTGAGGAACTGCAGCGGCCTGCGGACGCTGCCCGACAGCCTCGGCGAT
CTCGCCGCGCTGAAGCAGCTGCGCGTCGTCGGCTGCGCGCAGCTCTCGCG
CCTGCCCGGCACCGTGTGCGATCTGGCATTGCTGGAATCGCTCCACGTGG
CCTGGTGCAATGCGCTCACGAGTCTGCCCGCGCGCCTCGGCCGCCTGCCG
GCGCTGACCGAGCTGTCGATTGCGGCGTGTGCGGGCCTCGCGACGCTGCC
CGACTCCATCGGTGGTCTGACGCGTCTTGTGTCGCTGCTGCTGAAGCACA
TCCCGATCGAGACGCTGCCAAGCAGCATCGGCGGCCTGACAGCGCTGACC
AACCTTCAGGTAGAGGGCTGCCGTGCCGTGCGCCGCCTGCCCGCCGCCGT
CGGCGCGCTGCGCGCGCTCACACGCCTGTCGCTCGTGGAATGTGCTGCCC
TCGGCGCGCTACCCGATGCTCTCTGCTCCCTGCCAGCGCTGAAAGTGCTC
GACGTCAGCGCCTGCGCGCGGCTCGTGCAGCTTCCGTACAACATTGGCGA
CTTGCAGGCGCTCACGCACCTCCACCTCGGCGCATGCGTGGCGCTGGAGT
CGCTGCCGGATGCCATCGGCACACTGCGCGCGCTCACGTGCCTCAACCTC
GCGCACTGCAAGCGGCTCGCGGTGCTGCCCGACAGCATGGGCGAGATGGC
AGCGCTCAGGCTGCTGGACATCAGCCGCTGCGCGCGCCTGGCGGCCCTGC
CCGACGCGCTGTGGCGGCTGAAGCGGCTCACGCGGATATACGCAGACGGC
TGCCAGCTTTCCGTGAAGCGGACCGCGGACGTCATGGCACTGAAGAACCG
TTGCATCCGTCGCGGCTAG
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protein sequence of jgi.p|Trimin1|157451

>Trimin1|157451|e_gw1.3.142.1 ID=Trimin1|157451|e_gw1.3.142.1|Name=jgi.p|Trimin1|157451|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=323bp
MLVKSLSVLNLSSCAGLARLPDSIGELAALTALDVRNCSGLRTLPDSLGD
LAALKQLRVVGCAQLSRLPGTVCDLALLESLHVAWCNALTSLPARLGRLP
ALTELSIAACAGLATLPDSIGGLTRLVSLLLKHIPIETLPSSIGGLTALT
NLQVEGCRAVRRLPAAVGALRALTRLSLVECAALGALPDALCSLPALKVL
DVSACARLVQLPYNIGDLQALTHLHLGACVALESLPDAIGTLRALTCLNL
AHCKRLAVLPDSMGEMAALRLLDISRCARLAALPDALWRLKRLTRIYADG
CQLSVKRTADVMALKNRCIRRG*
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mRNA from alignment at Contig_3:1514134..1515102-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_437 ID=mRNA_437|Name=jgi.p|Trimin1|157451|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=969bp|location=Sequence derived from alignment at Contig_3:1514134..1515102- (Tribonema minus UTEX_B_3156 )
ATGCTGGTGAAGTCGCTGTCGGTGCTCAATCTCAGCAGCTGCGCGGGCCT
GGCGCGCCTGCCTGACAGCATCGGCGAGCTGGCGGCGCTGACGGCACTCG
ACGTGAGGAACTGCAGCGGCCTGCGGACGCTGCCCGACAGCCTCGGCGAT
CTCGCCGCGCTGAAGCAGCTGCGCGTCGTCGGCTGCGCGCAGCTCTCGCG
CCTGCCCGGCACCGTGTGCGATCTGGCATTGCTGGAATCGCTCCACGTGG
CCTGGTGCAATGCGCTCACGAGTCTGCCCGCGCGCCTCGGCCGCCTGCCG
GCGCTGACCGAGCTGTCGATTGCGGCGTGTGCGGGCCTCGCGACGCTGCC
CGACTCCATCGGTGGTCTGACGCGTCTTGTGTCGCTGCTGCTGAAGCACA
TCCCGATCGAGACGCTGCCAAGCAGCATCGGCGGCCTGACAGCGCTGACC
AACCTTCAGGTAGAGGGCTGCCGTGCCGTGCGCCGCCTGCCCGCCGCCGT
CGGCGCGCTGCGCGCGCTCACACGCCTGTCGCTCGTGGAATGTGCTGCCC
TCGGCGCGCTACCCGATGCTCTCTGCTCCCTGCCAGCGCTGAAAGTGCTC
GACGTCAGCGCCTGCGCGCGGCTCGTGCAGCTTCCGTACAACATTGGCGA
CTTGCAGGCGCTCACGCACCTCCACCTCGGCGCATGCGTGGCGCTGGAGT
CGCTGCCGGATGCCATCGGCACACTGCGCGCGCTCACGTGCCTCAACCTC
GCGCACTGCAAGCGGCTCGCGGTGCTGCCCGACAGCATGGGCGAGATGGC
AGCGCTCAGGCTGCTGGACATCAGCCGCTGCGCGCGCCTGGCGGCCCTGC
CCGACGCGCTGTGGCGGCTGAAGCGGCTCACGCGGATATACGCAGACGGC
TGCCAGCTTTCCGTGAAGCGGACCGCGGACGTCATGGCACTGAAGAACCG
TTGCATCCGTCGCGGCTAG
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Coding sequence (CDS) from alignment at Contig_3:1514134..1515102-

>mRNA_437 ID=mRNA_437|Name=jgi.p|Trimin1|157451|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=969bp|location=Sequence derived from alignment at Contig_3:1514134..1515102- (Tribonema minus UTEX_B_3156 )
ATGCTGGTGAAGTCGCTGTCGGTGCTCAATCTCAGCAGCTGCGCGGGCCT
GGCGCGCCTGCCTGACAGCATCGGCGAGCTGGCGGCGCTGACGGCACTCG
ACGTGAGGAACTGCAGCGGCCTGCGGACGCTGCCCGACAGCCTCGGCGAT
CTCGCCGCGCTGAAGCAGCTGCGCGTCGTCGGCTGCGCGCAGCTCTCGCG
CCTGCCCGGCACCGTGTGCGATCTGGCATTGCTGGAATCGCTCCACGTGG
CCTGGTGCAATGCGCTCACGAGTCTGCCCGCGCGCCTCGGCCGCCTGCCG
GCGCTGACCGAGCTGTCGATTGCGGCGTGTGCGGGCCTCGCGACGCTGCC
CGACTCCATCGGTGGTCTGACGCGTCTTGTGTCGCTGCTGCTGAAGCACA
TCCCGATCGAGACGCTGCCAAGCAGCATCGGCGGCCTGACAGCGCTGACC
AACCTTCAGGTAGAGGGCTGCCGTGCCGTGCGCCGCCTGCCCGCCGCCGT
CGGCGCGCTGCGCGCGCTCACACGCCTGTCGCTCGTGGAATGTGCTGCCC
TCGGCGCGCTACCCGATGCTCTCTGCTCCCTGCCAGCGCTGAAAGTGCTC
GACGTCAGCGCCTGCGCGCGGCTCGTGCAGCTTCCGTACAACATTGGCGA
CTTGCAGGCGCTCACGCACCTCCACCTCGGCGCATGCGTGGCGCTGGAGT
CGCTGCCGGATGCCATCGGCACACTGCGCGCGCTCACGTGCCTCAACCTC
GCGCACTGCAAGCGGCTCGCGGTGCTGCCCGACAGCATGGGCGAGATGGC
AGCGCTCAGGCTGCTGGACATCAGCCGCTGCGCGCGCCTGGCGGCCCTGC
CCGACGCGCTGTGGCGGCTGAAGCGGCTCACGCGGATATACGCAGACGGC
TGCCAGCTTTCCGTGAAGCGGACCGCGGACGTCATGGCACTGAAGAACCG
TTGCATCCGTCGCGGCTAG
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