mRNA_4368 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|347335 vs. uniprot
Match: A0A835ZKW5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKW5_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 3.540e-18 Identity = 165/167 (98.80%), Postives = 165/167 (98.80%), Query Frame = 1
Query: 10 MENVKIKRCEGEGCTKQPNYAFQGQKARFCKGHAQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKWRRATAAAGVAXXXXXXXXXXXXXXXXXXXXXXXXTDAATAAVAVASLR 510
MENVKIKRCEGEGCTKQPNYAFQGQKARFCKGHAQE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKWRRATAAAGVAXXXXXXXXXXXXXXXXXXXXXXXXTDAATAAVAVASLR
Sbjct: 1 MENVKIKRCEGEGCTKQPNYAFQGQKARFCKGHAQEGMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKWRRATAAAGVAXXXXXXXXXXXXXXXXXXXXXXXXTDAATAAVAVASLR 167
BLAST of jgi.p|Trimin1|347335 vs. uniprot
Match: A0A835YPU0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPU0_9STRA) HSP 1 Score: 799 bits (2063), Expect = 1.410e-285 Identity = 546/546 (100.00%), Postives = 546/546 (100.00%), Query Frame = 1
Query: 1 MVVQQQEALNESLSDVEPIVVAKKHIVQMAAQHTSCAGCVAAVKALITQPLSNLRMLAAIMDDDGSNLVLKEAYQNDERRLSLLLEAFPLNAVLKKVQPPSSSLRCPLHRRSACSTPLTASNXXXXXXXXXXXXXXXXSANNSSSTVAALDGWEWMDAWDRLPQQDRCKVATIDAAGLESALHVATSNHRFCADCKHNVVIAFDLLTQRYDASGIDNAEEYNAELFRPFIGRMRPMEGGAEGSGGAGRAGRQMLVCAVEDVEELICWHEDFDSQQEYASSGQRHAATLEHGQRELRSIVGSMLLSQLRAAWTAHNARAQAEQYLFGLAVDAIRTALRSAEDDLMGDGLLEGDGADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKPKDGKAARKGQPAAAALPLPPPRIDTGADAAPPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVGGLSLMDQLEDSSDEDALDPDLLREMEALRAGLDVCDRASLRATLHQNFREFLSAQRG 1638
MVVQQQEALNESLSDVEPIVVAKKHIVQMAAQHTSCAGCVAAVKALITQPLSNLRMLAAIMDDDGSNLVLKEAYQNDERRLSLLLEAFPLNAVLKKVQPPSSSLRCPLHRRSACSTPLTASNXXXXXXXXXXXXXXXXSANNSSSTVAALDGWEWMDAWDRLPQQDRCKVATIDAAGLESALHVATSNHRFCADCKHNVVIAFDLLTQRYDASGIDNAEEYNAELFRPFIGRMRPMEGGAEGSGGAGRAGRQMLVCAVEDVEELICWHEDFDSQQEYASSGQRHAATLEHGQRELRSIVGSMLLSQLRAAWTAHNARAQAEQYLFGLAVDAIRTALRSAEDDLMGDGLLEGDGADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKPKDGKAARKGQPAAAALPLPPPRIDTGADAAPPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVGGLSLMDQLEDSSDEDALDPDLLREMEALRAGLDVCDRASLRATLHQNFREFLSAQRG
Sbjct: 1 MVVQQQEALNESLSDVEPIVVAKKHIVQMAAQHTSCAGCVAAVKALITQPLSNLRMLAAIMDDDGSNLVLKEAYQNDERRLSLLLEAFPLNAVLKKVQPPSSSLRCPLHRRSACSTPLTASNXXXXXXXXXXXXXXXXSANNSSSTVAALDGWEWMDAWDRLPQQDRCKVATIDAAGLESALHVATSNHRFCADCKHNVVIAFDLLTQRYDASGIDNAEEYNAELFRPFIGRMRPMEGGAEGSGGAGRAGRQMLVCAVEDVEELICWHEDFDSQQEYASSGQRHAATLEHGQRELRSIVGSMLLSQLRAAWTAHNARAQAEQYLFGLAVDAIRTALRSAEDDLMGDGLLEGDGADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKPKDGKAARKGQPAAAALPLPPPRIDTGADAAPPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVGGLSLMDQLEDSSDEDALDPDLLREMEALRAGLDVCDRASLRATLHQNFREFLSAQRG 546
BLAST of jgi.p|Trimin1|347335 vs. uniprot
Match: A0A6H5KD93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD93_9PHAE) HSP 1 Score: 260 bits (664), Expect = 6.150e-75 Identity = 153/326 (46.93%), Postives = 210/326 (64.42%), Query Frame = 1
Query: 55 IVVAKKHIVQMAAQHTSCAGCVAAVKALITQPLSNLRMLAAIMDDDGSN------LVLKEAYQNDERRLSLLLEAFPLNAVLKKVQPPSSSLRCPLHRRSACSTPLTASNXXXXXXXXXXXXXXXXSANNSSSTVAALDGWEWMDAWDRLPQQDRCKVATIDAAGLESALHVATSNHRFCADCKHNVVIAFDLLTQRYDASGIDNAEEYNAELFRPFIGRMRPMEGGAEGSGGAGRAGRQMLVCAVEDVEELICWHEDFD-SQQEYASSG-QRHAATLEHGQRELRSIVGSMLLSQLRAAWTAHNARAQAEQYLFGLAVDAIRTAL 1008
IVV K+ + ++A +TSCAGCVA+V+AL+ +PLS LRML A++D+ G+ LKEAY D +R+ LL+ FP+++VLKK+QP S+ RC LHRR + + XXXXXXXX V ++D W+W DAW+R+P R +VAT+ A E+A+H AT +++FC DCK+NVV A D+L + G DN EEY+ E+F P R+ G +G + +ML+C V DVE+LI +HE+F S QE SSG QRHA+TL+ GQRE+RSI+G ++LSQLR+ W A+ QAEQYLF L VDA+RT L
Sbjct: 4 IVVEKELLAKLALHNTSCAGCVASVRALLARPLSELRMLKAVVDEHGNGGGMSGAFRLKEAYVKDPKRMGQLLDTFPMSSVLKKIQPMGSAQRCQLHRRLISLSLAGVGSGGGHRAGDXXXXXXXXXXXXXXXGVGSVDSWDWEDAWERMPPNLRNEVATVKAPAFEAAVHQATESNKFCPDCKYNVVQAHDILMGKIGLEGSDNEEEYDEEIFLPIEDRVF--------EGESGTSEDKMLICDVMDVEDLIYFHEEFSASSQELDSSGSQRHASTLDQGQREVRSILGGLVLSQLRSVWHTQTAQVQAEQYLFCLVVDAVRTML 321
BLAST of jgi.p|Trimin1|347335 vs. uniprot
Match: A0A4D9CZ38_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZ38_9STRA) HSP 1 Score: 195 bits (495), Expect = 4.750e-50 Identity = 132/368 (35.87%), Postives = 171/368 (46.47%), Query Frame = 1
Query: 193 GSNLVLKEAYQNDERRLSLLLEAFPLNAVLKKVQPPSSSLRCPLHRRSACSTPLTASNXXXXXXXXXXXXXXXXSANNSSSTVAALDGWEWMDAWDRLPQQDRCKVATIDAAGLESALHVATSNHRFCADCKHNVVIAFDLLTQRYDASGIDNAEEYNAELFRPFIGRMRPM-----------------------EGGAEG-------------------------------------------SGGAGRAGRQ---------------------------MLVCAVEDVEELICWHEDFDSQQEYASSGQRHAATLEHGQRELRSIVGSMLLSQLRAAWTAHNARAQAEQYLFGLAVDAIRTALRSA 1017
+ L+L+E + + RL+ LLE FP + KKV + RCPLHRR A ++ GW+ AW RLP + V I+ L++A+H AT++HRFCADCKHNVV+A D+LT+R +D E+ + EL+RPF+GR+ EGG EG S G +G++ +L CAVEDVE LI W +DFDSQ EYA+SGQRHAATLEHGQRE+R+I+GS+LLSQLRAAW A AQ+E YLF LA+ AIRT L SA
Sbjct: 7 STTLLLREQFMQNPSRLAQLLERFPPPPLPKKVSAHGAHGRCPLHRRMGSGAGWGAGGWQ----------------HHHYGQXXXDGGWDREAAWARLPGAAKEGVGKIELGTLQTAMHAATASHRFCADCKHNVVMALDILTERVGVGEVDEGEDVDMELYRPFMGRVLDRSAAYGDVPPEKEGRGGIRRGSVKEGGREGDXXXXXXXXXXXXXXXXXXXXXXXXGERMKIELEDIGHEKRRKSASKGESGQEDAGAVEAVSAAGGGARPATPLKGEDDRVLWCAVEDVERLIAWAQDFDSQ-EYATSGQRHAATLEHGQREVRAIIGSVLLSQLRAAWHQQTAHAQSEHYLFALAMQAIRTQLASA 357
BLAST of jgi.p|Trimin1|347335 vs. uniprot
Match: A0A7S2S925_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S925_9STRA) HSP 1 Score: 187 bits (476), Expect = 1.760e-49 Identity = 117/335 (34.93%), Postives = 181/335 (54.03%), Query Frame = 1
Query: 61 VAKKHIVQMAAQHTSCAGCVAAVKALITQPLSNLRMLAAIMDDDGSN-LVLKEAYQNDERRLSLLLEAFPLNAVLKKVQPPSSSLRCPLHRRSACSTPLTASNXXXXXXXXXXXXXXXXSANNSSSTVAALDGWEWMDAWDRLPQQDRCKVATIDAAGLESALHVATSNHRFCADCKHNVVIAFDLLTQRYDASGIDNA-EEYNAELFRPFIGRMRPMEGGAEGSGGAGRAGRQMLVCAVEDVEELICWHEDFDSQQEYASSGQRHAATLEHGQRELRSIVGSMLLSQLRAAWTAHNARAQAEQYLFGLAVDAIRTALRS-AEDDLMGDGLLEGD 1056
++K + + AA HTSC+GC++A+++ ++ +LR++ ++++D + LVL++ Y +D ++L L+++FP + V ++VQP + RC LHRR+ N W+W DAW+RLP R +VA +D LESA+ ATS+ FC DCK NV+ FD+L RYD + A E+YN LF +GR+ E GR+ + L C ++V LI E F+ Q+ + QRHAATL+ Q E+R+ +G+ LL QLR A AH Q EQ+L GL +D I+ A+ + E +L+ D E D
Sbjct: 41 MSKAVLSRAAAHHTSCSGCLSAIRSFLSVSAQDLRLVGSVVEDCTCDALVLRQCYADDPKKLGQLMQSFPHSNVFEQVQPEKGAKRCALHRRAGVVASALPDN-----------------------------SWDWRDAWERLPSPIRREVALVDVGVLESAVQRATSSKHFCPDCKPNVIAMFDVLVGRYDLLDLPGAIEDYNPVLFDSLMGRVI-----TEQLNDGGRS--EFLHCREDEVANLIADFEAFEIQELTSPVNQRHAATLDQAQEEIRATIGAQLLVQLRTASQAHATAVQGEQFLLGLILDFIQRAVDTDGESELLPDSPTERD 339
BLAST of jgi.p|Trimin1|347335 vs. uniprot
Match: D7FSF5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSF5_ECTSI) HSP 1 Score: 154 bits (388), Expect = 9.310e-38 Identity = 102/267 (38.20%), Postives = 118/267 (44.19%), Query Frame = 1
Query: 202 LVLKEAYQNDERRLSLLLEAFPLNAVLKKVQPPSSSLRCPLHRRSACSTPLTASNXXXXXXXXXXXXXXXXSANNSSSTVAALDGWEWMDAWDRLPQQDRCKVATIDAAGLESALHVATSNHRFCADCKHNVVIAFDLLTQRYDASGIDNAEEYNAELFRPFIGRMRPMEGGAEGSGGAGRAGRQMLVCAVEDVEELICWHEDFDSQQEYASSGQRHAATLEHGQRELRSIVGSMLLSQLRAAWTAHNARAQAEQYLFGLAVDAIRT 1002
L L+EAY D RL LLE FPL ++KKVQP LRC +HRR N ++ +GWEW DAWDRLP R KVA ID LE+A+H +DVEELICWHEDFDS+ EY S QRHAATLEHGQRE+RSIVGS+LLSQLR + H A+ Q EQYLF L + AIRT
Sbjct: 75 LCLREAYLTDRARLDQLLETFPLEPLMKKVQPKGVGLRCEIHRR------------------------------NGGQAIS--EGWEWEDAWDRLPADMRLKVAAIDVDALEAAMH---------------------------------------------------------------------------QDVEELICWHEDFDSR-EYTRSSQRHAATLEHGQREIRSIVGSVLLSQLRTTYHNHLAQVQGEQYLFALVLQAIRT 233
BLAST of jgi.p|Trimin1|347335 vs. uniprot
Match: A0A7S2ATP2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ATP2_9STRA) HSP 1 Score: 129 bits (325), Expect = 1.490e-31 Identity = 74/163 (45.40%), Postives = 103/163 (63.19%), Query Frame = 1
Query: 76 IVQMAAQHTSCAGCVAAVKALITQPLSNLRMLAAIMDD--DGSNLVLKEAYQNDERRLSLLLEAFPLNAVLKKVQPPSSSLRCPLHRRSACSTPLTASNXXXXXXXXXXXXXXXXSANNSSSTVAALDGWEWMDAWDRLPQQDRCKVATIDAAGLESALHVAT 558
IV++AAQ+T+CAGC AA+ +L+ +PLS+LR+L A+M + D L L+E+YQND RL LL FPL++V+KKVQP +LRC +HRR+ +T LT + +S + A GW+W +AWDRLP R KVATID + L +A+H AT
Sbjct: 2 IVRLAAQYTTCAGCCAALGSLLKRPLSDLRLLNAVMKEGNDCGELYLRESYQNDPLRLDQLLTTFPLSSVIKKVQPTGMNLRCAVHRRALSAT-LTMGHV------------------HSHTASEAGGGWDWEEAWDRLPANLRKKVATIDVSALSTAVHHAT 145
BLAST of jgi.p|Trimin1|347335 vs. uniprot
Match: W7TQZ3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQZ3_9STRA) HSP 1 Score: 120 bits (301), Expect = 6.210e-25 Identity = 62/88 (70.45%), Postives = 73/88 (82.95%), Query Frame = 1
Query: 754 QMLVCAVEDVEELICWHEDFDSQQEYASSGQRHAATLEHGQRELRSIVGSMLLSQLRAAWTAHNARAQAEQYLFGLAVDAIRTALRSA 1017
++L CAVEDVE LI W +DFDSQ E+A+SGQRHAATLEHGQRE+R+I+GS+LLSQLRAAW A AQ+E YLF LA+ AIRT L SA
Sbjct: 174 RVLWCAVEDVERLIAWAQDFDSQ-EFAASGQRHAATLEHGQREVRAIIGSVLLSQLRAAWHQQTAHAQSEHYLFALAMQAIRTQLASA 260
BLAST of jgi.p|Trimin1|347335 vs. uniprot
Match: D7FQ15_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ15_ECTSI) HSP 1 Score: 112 bits (281), Expect = 8.640e-25 Identity = 71/159 (44.65%), Postives = 97/159 (61.01%), Query Frame = 1
Query: 55 IVVAKKHIVQMAAQHTSCAGCVAAVKALITQPLSNLRMLAAIMDDDGSN-------LVLKEAYQNDERRLSLLLEAFPLNAVLKKVQPPSSSLRCPLHRRSACSTPLTASNXXXXXXXXXXXXXXXXSANNSSSTVAALDGWEWMDAWDRLPQQDRCKV 510
IVV K+ + ++A +TSCAGCVA+V+AL+ +PLS LRML A++D+ G N LKEAY D +R+ LL+ FP+++VLKKVQP S+ RC LHRR + + XXXXXXXXX ++D W+W DAW+R+P R K
Sbjct: 49 IVVEKELLAKLALHNTSCAGCVASVRALLARPLSELRMLKAVVDEHGGNGGGMSGAFRLKEAYVKDPKRMGQLLDTFPMSSVLKKVQPMGSAQRCQLHRRLISLSLAGVGSGGGHRGGXXXXXXXXXXXXXXXXXXXSVDSWDWEDAWERMPPNLRVKT 207
BLAST of jgi.p|Trimin1|347335 vs. uniprot
Match: D7FQ14_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ14_ECTSI) HSP 1 Score: 98.6 bits (244), Expect = 1.010e-18 Identity = 53/86 (61.63%), Postives = 66/86 (76.74%), Query Frame = 1
Query: 757 MLVCAVEDVEELICWHEDFD-SQQEYASSG-QRHAATLEHGQRELRSIVGSMLLSQLRAAWTAHNARAQAEQYLFGLAVDAIRTAL 1008
ML+C V DVE+LI +HE+F S QE SSG QRHA+TL+ GQRE+RSI+G ++LSQLR+ W A+ QAEQYLF L VDA+RT L
Sbjct: 1 MLICDVMDVEDLIYFHEEFSASSQELDSSGSQRHASTLDQGQREVRSILGGLVLSQLRSVWHTQTAQVQAEQYLFCLVVDAVRTML 86
BLAST of jgi.p|Trimin1|347335 vs. uniprot
Match: A0A0B7BFE8_9EUPU (Uncharacterized protein n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B7BFE8_9EUPU) HSP 1 Score: 70.1 bits (170), Expect = 7.750e-9 Identity = 75/335 (22.39%), Postives = 130/335 (38.81%), Query Frame = 1
Query: 55 IVVAKKHIVQMAAQHTSCAGCVAAVKALITQ-PLSNLRMLAAIMDDDGSNLVLKEAYQNDERRLSLLLEAF--PLNAVLKKVQPPSSSLRCPLHRRSACSTPLTASNXXXXXXXXXXXXXXXXSANNSSSTVAALDGWEWMDAWDRLPQQDRCKVATIDAAGLESALHVATSNHRFCADCKHNVVIAFDLLTQRYDASGIDNAEEYNAELFRPFIGRMRPMEGGAEGSGGAGRAGRQMLVCAVEDVEELICWHEDFDSQQEYASSGQRHAATLEHGQRELRSIVGSMLLSQLRAAWTAHNARAQAEQYLFGLAVDAIRTALRSAEDDLMGDGLLE 1050
++V+ K IV M + C GC +V+ L Q S L ++ + ++ Y + R L L L++V++ + + RC LH + S TV W+DAWD L + R KV +D L + + H+FCA+CK V++A+ +L +D+S + + Y A L+ ++ V + D E + E + + RHA TL+ Q E+ + +G + +L W + Q LF + VD +R + ++A ++ G LE
Sbjct: 71 LLVSGKDIVSMLSHMVPCVGCRKSVERLFYQLQKSQHPALEPLVITSRGEMSIRHDYLLNPRLLFSLFHVHGSKLHSVVEAMSKSKKNKRCNLHSLET----------------------------HKSRTVGC-----WLDAWDALAESCRGKVLVVDMNQLLTTIDTYLDKHKFCAECKTKVMLAYSILIGEHDSS---SEKGYCAALYENLH-----------------CCAKERHVHVLNDTEFIAQLLEKAEPEF-IGGKKDRHAKTLDIAQEEVLTCLGIHIFERLHRIWQKLRSEEQTWLILFYMGVDTLRKSYQTALEEKQGASNLE 351 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347335 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
BLAST of jgi.p|Trimin1|347335 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_4368 ID=mRNA_4368|Name=jgi.p|Trimin1|347335|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=513bp|location=Sequence derived from alignment at Contig_10:1447665..1448461+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CAGGAGAAAATGGAGAACGTCAAGATCAAGCGCTGCGAGGGGGAGGGGTGback to top protein sequence of jgi.p|Trimin1|347335 >Trimin1|347335|estExt_Genemark1.C_Ctg_100171 ID=Trimin1|347335|estExt_Genemark1.C_Ctg_100171|Name=jgi.p|Trimin1|347335|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=168bp MENVKIKRCEGEGCTKQPNYAFQGQKARFCKGHAQEGMENVNQRRCKEEGback to top mRNA from alignment at Contig_10:1447665..1448461+ Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_4368 ID=mRNA_4368|Name=jgi.p|Trimin1|347335|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=797bp|location=Sequence derived from alignment at Contig_10:1447665..1448461+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_10:1447665..1448461+ >mRNA_4368 ID=mRNA_4368|Name=jgi.p|Trimin1|347335|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=504bp|location=Sequence derived from alignment at Contig_10:1447665..1448461+ (Tribonema minus UTEX_B_3156 )back to top |