mRNA_4368 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|347335
Unique NamemRNA_4368
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|347335 vs. uniprot
Match: A0A835ZKW5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKW5_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 3.540e-18
Identity = 165/167 (98.80%), Postives = 165/167 (98.80%), Query Frame = 1
Query:   10 MENVKIKRCEGEGCTKQPNYAFQGQKARFCKGHAQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKWRRATAAAGVAXXXXXXXXXXXXXXXXXXXXXXXXTDAATAAVAVASLR 510
            MENVKIKRCEGEGCTKQPNYAFQGQKARFCKGHAQE  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKWRRATAAAGVAXXXXXXXXXXXXXXXXXXXXXXXXTDAATAAVAVASLR
Sbjct:    1 MENVKIKRCEGEGCTKQPNYAFQGQKARFCKGHAQEGMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKWRRATAAAGVAXXXXXXXXXXXXXXXXXXXXXXXXTDAATAAVAVASLR 167          
BLAST of jgi.p|Trimin1|347335 vs. uniprot
Match: A0A835YPU0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPU0_9STRA)

HSP 1 Score: 799 bits (2063), Expect = 1.410e-285
Identity = 546/546 (100.00%), Postives = 546/546 (100.00%), Query Frame = 1
Query:    1 MVVQQQEALNESLSDVEPIVVAKKHIVQMAAQHTSCAGCVAAVKALITQPLSNLRMLAAIMDDDGSNLVLKEAYQNDERRLSLLLEAFPLNAVLKKVQPPSSSLRCPLHRRSACSTPLTASNXXXXXXXXXXXXXXXXSANNSSSTVAALDGWEWMDAWDRLPQQDRCKVATIDAAGLESALHVATSNHRFCADCKHNVVIAFDLLTQRYDASGIDNAEEYNAELFRPFIGRMRPMEGGAEGSGGAGRAGRQMLVCAVEDVEELICWHEDFDSQQEYASSGQRHAATLEHGQRELRSIVGSMLLSQLRAAWTAHNARAQAEQYLFGLAVDAIRTALRSAEDDLMGDGLLEGDGADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKPKDGKAARKGQPAAAALPLPPPRIDTGADAAPPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVGGLSLMDQLEDSSDEDALDPDLLREMEALRAGLDVCDRASLRATLHQNFREFLSAQRG 1638
            MVVQQQEALNESLSDVEPIVVAKKHIVQMAAQHTSCAGCVAAVKALITQPLSNLRMLAAIMDDDGSNLVLKEAYQNDERRLSLLLEAFPLNAVLKKVQPPSSSLRCPLHRRSACSTPLTASNXXXXXXXXXXXXXXXXSANNSSSTVAALDGWEWMDAWDRLPQQDRCKVATIDAAGLESALHVATSNHRFCADCKHNVVIAFDLLTQRYDASGIDNAEEYNAELFRPFIGRMRPMEGGAEGSGGAGRAGRQMLVCAVEDVEELICWHEDFDSQQEYASSGQRHAATLEHGQRELRSIVGSMLLSQLRAAWTAHNARAQAEQYLFGLAVDAIRTALRSAEDDLMGDGLLEGDGADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKPKDGKAARKGQPAAAALPLPPPRIDTGADAAPPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVGGLSLMDQLEDSSDEDALDPDLLREMEALRAGLDVCDRASLRATLHQNFREFLSAQRG
Sbjct:    1 MVVQQQEALNESLSDVEPIVVAKKHIVQMAAQHTSCAGCVAAVKALITQPLSNLRMLAAIMDDDGSNLVLKEAYQNDERRLSLLLEAFPLNAVLKKVQPPSSSLRCPLHRRSACSTPLTASNXXXXXXXXXXXXXXXXSANNSSSTVAALDGWEWMDAWDRLPQQDRCKVATIDAAGLESALHVATSNHRFCADCKHNVVIAFDLLTQRYDASGIDNAEEYNAELFRPFIGRMRPMEGGAEGSGGAGRAGRQMLVCAVEDVEELICWHEDFDSQQEYASSGQRHAATLEHGQRELRSIVGSMLLSQLRAAWTAHNARAQAEQYLFGLAVDAIRTALRSAEDDLMGDGLLEGDGADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKPKDGKAARKGQPAAAALPLPPPRIDTGADAAPPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVGGLSLMDQLEDSSDEDALDPDLLREMEALRAGLDVCDRASLRATLHQNFREFLSAQRG 546          
BLAST of jgi.p|Trimin1|347335 vs. uniprot
Match: A0A6H5KD93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD93_9PHAE)

HSP 1 Score: 260 bits (664), Expect = 6.150e-75
Identity = 153/326 (46.93%), Postives = 210/326 (64.42%), Query Frame = 1
Query:   55 IVVAKKHIVQMAAQHTSCAGCVAAVKALITQPLSNLRMLAAIMDDDGSN------LVLKEAYQNDERRLSLLLEAFPLNAVLKKVQPPSSSLRCPLHRRSACSTPLTASNXXXXXXXXXXXXXXXXSANNSSSTVAALDGWEWMDAWDRLPQQDRCKVATIDAAGLESALHVATSNHRFCADCKHNVVIAFDLLTQRYDASGIDNAEEYNAELFRPFIGRMRPMEGGAEGSGGAGRAGRQMLVCAVEDVEELICWHEDFD-SQQEYASSG-QRHAATLEHGQRELRSIVGSMLLSQLRAAWTAHNARAQAEQYLFGLAVDAIRTAL 1008
            IVV K+ + ++A  +TSCAGCVA+V+AL+ +PLS LRML A++D+ G+         LKEAY  D +R+  LL+ FP+++VLKK+QP  S+ RC LHRR    +     +        XXXXXXXX        V ++D W+W DAW+R+P   R +VAT+ A   E+A+H AT +++FC DCK+NVV A D+L  +    G DN EEY+ E+F P   R+          G +G +  +ML+C V DVE+LI +HE+F  S QE  SSG QRHA+TL+ GQRE+RSI+G ++LSQLR+ W    A+ QAEQYLF L VDA+RT L
Sbjct:    4 IVVEKELLAKLALHNTSCAGCVASVRALLARPLSELRMLKAVVDEHGNGGGMSGAFRLKEAYVKDPKRMGQLLDTFPMSSVLKKIQPMGSAQRCQLHRRLISLSLAGVGSGGGHRAGDXXXXXXXXXXXXXXXGVGSVDSWDWEDAWERMPPNLRNEVATVKAPAFEAAVHQATESNKFCPDCKYNVVQAHDILMGKIGLEGSDNEEEYDEEIFLPIEDRVF--------EGESGTSEDKMLICDVMDVEDLIYFHEEFSASSQELDSSGSQRHASTLDQGQREVRSILGGLVLSQLRSVWHTQTAQVQAEQYLFCLVVDAVRTML 321          
BLAST of jgi.p|Trimin1|347335 vs. uniprot
Match: A0A4D9CZ38_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZ38_9STRA)

HSP 1 Score: 195 bits (495), Expect = 4.750e-50
Identity = 132/368 (35.87%), Postives = 171/368 (46.47%), Query Frame = 1
Query:  193 GSNLVLKEAYQNDERRLSLLLEAFPLNAVLKKVQPPSSSLRCPLHRRSACSTPLTASNXXXXXXXXXXXXXXXXSANNSSSTVAALDGWEWMDAWDRLPQQDRCKVATIDAAGLESALHVATSNHRFCADCKHNVVIAFDLLTQRYDASGIDNAEEYNAELFRPFIGRMRPM-----------------------EGGAEG-------------------------------------------SGGAGRAGRQ---------------------------MLVCAVEDVEELICWHEDFDSQQEYASSGQRHAATLEHGQRELRSIVGSMLLSQLRAAWTAHNARAQAEQYLFGLAVDAIRTALRSA 1017
             + L+L+E +  +  RL+ LLE FP   + KKV    +  RCPLHRR        A                    ++         GW+   AW RLP   +  V  I+   L++A+H AT++HRFCADCKHNVV+A D+LT+R     +D  E+ + EL+RPF+GR+                          EGG EG                                           S   G +G++                           +L CAVEDVE LI W +DFDSQ EYA+SGQRHAATLEHGQRE+R+I+GS+LLSQLRAAW    A AQ+E YLF LA+ AIRT L SA
Sbjct:    7 STTLLLREQFMQNPSRLAQLLERFPPPPLPKKVSAHGAHGRCPLHRRMGSGAGWGAGGWQ----------------HHHYGQXXXDGGWDREAAWARLPGAAKEGVGKIELGTLQTAMHAATASHRFCADCKHNVVMALDILTERVGVGEVDEGEDVDMELYRPFMGRVLDRSAAYGDVPPEKEGRGGIRRGSVKEGGREGDXXXXXXXXXXXXXXXXXXXXXXXXGERMKIELEDIGHEKRRKSASKGESGQEDAGAVEAVSAAGGGARPATPLKGEDDRVLWCAVEDVERLIAWAQDFDSQ-EYATSGQRHAATLEHGQREVRAIIGSVLLSQLRAAWHQQTAHAQSEHYLFALAMQAIRTQLASA 357          
BLAST of jgi.p|Trimin1|347335 vs. uniprot
Match: A0A7S2S925_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S925_9STRA)

HSP 1 Score: 187 bits (476), Expect = 1.760e-49
Identity = 117/335 (34.93%), Postives = 181/335 (54.03%), Query Frame = 1
Query:   61 VAKKHIVQMAAQHTSCAGCVAAVKALITQPLSNLRMLAAIMDDDGSN-LVLKEAYQNDERRLSLLLEAFPLNAVLKKVQPPSSSLRCPLHRRSACSTPLTASNXXXXXXXXXXXXXXXXSANNSSSTVAALDGWEWMDAWDRLPQQDRCKVATIDAAGLESALHVATSNHRFCADCKHNVVIAFDLLTQRYDASGIDNA-EEYNAELFRPFIGRMRPMEGGAEGSGGAGRAGRQMLVCAVEDVEELICWHEDFDSQQEYASSGQRHAATLEHGQRELRSIVGSMLLSQLRAAWTAHNARAQAEQYLFGLAVDAIRTALRS-AEDDLMGDGLLEGD 1056
            ++K  + + AA HTSC+GC++A+++ ++    +LR++ ++++D   + LVL++ Y +D ++L  L+++FP + V ++VQP   + RC LHRR+         N                              W+W DAW+RLP   R +VA +D   LESA+  ATS+  FC DCK NV+  FD+L  RYD   +  A E+YN  LF   +GR+       E     GR+  + L C  ++V  LI   E F+ Q+  +   QRHAATL+  Q E+R+ +G+ LL QLR A  AH    Q EQ+L GL +D I+ A+ +  E +L+ D   E D
Sbjct:   41 MSKAVLSRAAAHHTSCSGCLSAIRSFLSVSAQDLRLVGSVVEDCTCDALVLRQCYADDPKKLGQLMQSFPHSNVFEQVQPEKGAKRCALHRRAGVVASALPDN-----------------------------SWDWRDAWERLPSPIRREVALVDVGVLESAVQRATSSKHFCPDCKPNVIAMFDVLVGRYDLLDLPGAIEDYNPVLFDSLMGRVI-----TEQLNDGGRS--EFLHCREDEVANLIADFEAFEIQELTSPVNQRHAATLDQAQEEIRATIGAQLLVQLRTASQAHATAVQGEQFLLGLILDFIQRAVDTDGESELLPDSPTERD 339          
BLAST of jgi.p|Trimin1|347335 vs. uniprot
Match: D7FSF5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSF5_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 9.310e-38
Identity = 102/267 (38.20%), Postives = 118/267 (44.19%), Query Frame = 1
Query:  202 LVLKEAYQNDERRLSLLLEAFPLNAVLKKVQPPSSSLRCPLHRRSACSTPLTASNXXXXXXXXXXXXXXXXSANNSSSTVAALDGWEWMDAWDRLPQQDRCKVATIDAAGLESALHVATSNHRFCADCKHNVVIAFDLLTQRYDASGIDNAEEYNAELFRPFIGRMRPMEGGAEGSGGAGRAGRQMLVCAVEDVEELICWHEDFDSQQEYASSGQRHAATLEHGQRELRSIVGSMLLSQLRAAWTAHNARAQAEQYLFGLAVDAIRT 1002
            L L+EAY  D  RL  LLE FPL  ++KKVQP    LRC +HRR                              N    ++  +GWEW DAWDRLP   R KVA ID   LE+A+H                                                                           +DVEELICWHEDFDS+ EY  S QRHAATLEHGQRE+RSIVGS+LLSQLR  +  H A+ Q EQYLF L + AIRT
Sbjct:   75 LCLREAYLTDRARLDQLLETFPLEPLMKKVQPKGVGLRCEIHRR------------------------------NGGQAIS--EGWEWEDAWDRLPADMRLKVAAIDVDALEAAMH---------------------------------------------------------------------------QDVEELICWHEDFDSR-EYTRSSQRHAATLEHGQREIRSIVGSVLLSQLRTTYHNHLAQVQGEQYLFALVLQAIRT 233          
BLAST of jgi.p|Trimin1|347335 vs. uniprot
Match: A0A7S2ATP2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ATP2_9STRA)

HSP 1 Score: 129 bits (325), Expect = 1.490e-31
Identity = 74/163 (45.40%), Postives = 103/163 (63.19%), Query Frame = 1
Query:   76 IVQMAAQHTSCAGCVAAVKALITQPLSNLRMLAAIMDD--DGSNLVLKEAYQNDERRLSLLLEAFPLNAVLKKVQPPSSSLRCPLHRRSACSTPLTASNXXXXXXXXXXXXXXXXSANNSSSTVAALDGWEWMDAWDRLPQQDRCKVATIDAAGLESALHVAT 558
            IV++AAQ+T+CAGC AA+ +L+ +PLS+LR+L A+M +  D   L L+E+YQND  RL  LL  FPL++V+KKVQP   +LRC +HRR+  +T LT  +                   +S +   A  GW+W +AWDRLP   R KVATID + L +A+H AT
Sbjct:    2 IVRLAAQYTTCAGCCAALGSLLKRPLSDLRLLNAVMKEGNDCGELYLRESYQNDPLRLDQLLTTFPLSSVIKKVQPTGMNLRCAVHRRALSAT-LTMGHV------------------HSHTASEAGGGWDWEEAWDRLPANLRKKVATIDVSALSTAVHHAT 145          
BLAST of jgi.p|Trimin1|347335 vs. uniprot
Match: W7TQZ3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQZ3_9STRA)

HSP 1 Score: 120 bits (301), Expect = 6.210e-25
Identity = 62/88 (70.45%), Postives = 73/88 (82.95%), Query Frame = 1
Query:  754 QMLVCAVEDVEELICWHEDFDSQQEYASSGQRHAATLEHGQRELRSIVGSMLLSQLRAAWTAHNARAQAEQYLFGLAVDAIRTALRSA 1017
            ++L CAVEDVE LI W +DFDSQ E+A+SGQRHAATLEHGQRE+R+I+GS+LLSQLRAAW    A AQ+E YLF LA+ AIRT L SA
Sbjct:  174 RVLWCAVEDVERLIAWAQDFDSQ-EFAASGQRHAATLEHGQREVRAIIGSVLLSQLRAAWHQQTAHAQSEHYLFALAMQAIRTQLASA 260          
BLAST of jgi.p|Trimin1|347335 vs. uniprot
Match: D7FQ15_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ15_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 8.640e-25
Identity = 71/159 (44.65%), Postives = 97/159 (61.01%), Query Frame = 1
Query:   55 IVVAKKHIVQMAAQHTSCAGCVAAVKALITQPLSNLRMLAAIMDDDGSN-------LVLKEAYQNDERRLSLLLEAFPLNAVLKKVQPPSSSLRCPLHRRSACSTPLTASNXXXXXXXXXXXXXXXXSANNSSSTVAALDGWEWMDAWDRLPQQDRCKV 510
            IVV K+ + ++A  +TSCAGCVA+V+AL+ +PLS LRML A++D+ G N         LKEAY  D +R+  LL+ FP+++VLKKVQP  S+ RC LHRR    +     +       XXXXXXXXX          ++D W+W DAW+R+P   R K 
Sbjct:   49 IVVEKELLAKLALHNTSCAGCVASVRALLARPLSELRMLKAVVDEHGGNGGGMSGAFRLKEAYVKDPKRMGQLLDTFPMSSVLKKVQPMGSAQRCQLHRRLISLSLAGVGSGGGHRGGXXXXXXXXXXXXXXXXXXXSVDSWDWEDAWERMPPNLRVKT 207          
BLAST of jgi.p|Trimin1|347335 vs. uniprot
Match: D7FQ14_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ14_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 1.010e-18
Identity = 53/86 (61.63%), Postives = 66/86 (76.74%), Query Frame = 1
Query:  757 MLVCAVEDVEELICWHEDFD-SQQEYASSG-QRHAATLEHGQRELRSIVGSMLLSQLRAAWTAHNARAQAEQYLFGLAVDAIRTAL 1008
            ML+C V DVE+LI +HE+F  S QE  SSG QRHA+TL+ GQRE+RSI+G ++LSQLR+ W    A+ QAEQYLF L VDA+RT L
Sbjct:    1 MLICDVMDVEDLIYFHEEFSASSQELDSSGSQRHASTLDQGQREVRSILGGLVLSQLRSVWHTQTAQVQAEQYLFCLVVDAVRTML 86          
BLAST of jgi.p|Trimin1|347335 vs. uniprot
Match: A0A0B7BFE8_9EUPU (Uncharacterized protein n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B7BFE8_9EUPU)

HSP 1 Score: 70.1 bits (170), Expect = 7.750e-9
Identity = 75/335 (22.39%), Postives = 130/335 (38.81%), Query Frame = 1
Query:   55 IVVAKKHIVQMAAQHTSCAGCVAAVKALITQ-PLSNLRMLAAIMDDDGSNLVLKEAYQNDERRLSLLLEAF--PLNAVLKKVQPPSSSLRCPLHRRSACSTPLTASNXXXXXXXXXXXXXXXXSANNSSSTVAALDGWEWMDAWDRLPQQDRCKVATIDAAGLESALHVATSNHRFCADCKHNVVIAFDLLTQRYDASGIDNAEEYNAELFRPFIGRMRPMEGGAEGSGGAGRAGRQMLVCAVEDVEELICWHEDFDSQQEYASSGQRHAATLEHGQRELRSIVGSMLLSQLRAAWTAHNARAQAEQYLFGLAVDAIRTALRSAEDDLMGDGLLE 1050
            ++V+ K IV M +    C GC  +V+ L  Q   S    L  ++      + ++  Y  + R L  L       L++V++ +     + RC LH                                + S TV       W+DAWD L +  R KV  +D   L + +      H+FCA+CK  V++A+ +L   +D+S   + + Y A L+                        ++  V  + D E +    E  + +        RHA TL+  Q E+ + +G  +  +L   W    +  Q    LF + VD +R + ++A ++  G   LE
Sbjct:   71 LLVSGKDIVSMLSHMVPCVGCRKSVERLFYQLQKSQHPALEPLVITSRGEMSIRHDYLLNPRLLFSLFHVHGSKLHSVVEAMSKSKKNKRCNLHSLET----------------------------HKSRTVGC-----WLDAWDALAESCRGKVLVVDMNQLLTTIDTYLDKHKFCAECKTKVMLAYSILIGEHDSS---SEKGYCAALYENLH-----------------CCAKERHVHVLNDTEFIAQLLEKAEPEF-IGGKKDRHAKTLDIAQEEVLTCLGIHIFERLHRIWQKLRSEEQTWLILFYMGVDTLRKSYQTALEEKQGASNLE 351          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347335 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZKW5_9STRA3.540e-1898.80Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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BLAST of jgi.p|Trimin1|347335 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A835YPU0_9STRA1.410e-285100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5KD93_9PHAE6.150e-7546.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4D9CZ38_9STRA4.750e-5035.87Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S2S925_9STRA1.760e-4934.93Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
D7FSF5_ECTSI9.310e-3838.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2ATP2_9STRA1.490e-3145.40Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
W7TQZ3_9STRA6.210e-2570.45Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
D7FQ15_ECTSI8.640e-2544.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FQ14_ECTSI1.010e-1861.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0B7BFE8_9EUPU7.750e-922.39Uncharacterized protein n=1 Tax=Arion vulgaris Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_10contigContig_10:1447665..1448461 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|347335|estExt_Genemark1.C_Ctg_100171
Max annot lvl2880.D7FKH1|-
EggNOG OGs29ZCP@1|root,2RXW0@2759|Eukaryota
Evalue0.000284
Seed ortholog2880.D7FKH1
Hectar predicted targeting categoryother localisation
TranscriptId347657
TrackFilteredModels1
ProteinId347335
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347335gene_4368Tribonema minus UTEX_B_3156 geneContig_10 1447665..1448461 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4368_1exon_4368_1Tribonema minus UTEX_B_3156 exonContig_10 1447665..1448035 +
exon_4368_2exon_4368_2Tribonema minus UTEX_B_3156 exonContig_10 1448320..1448461 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_4368UTR5_4368Tribonema minus UTEX_B_3156 five_prime_UTRContig_10 1447665..1447673 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4368CDS_4368Tribonema minus UTEX_B_3156 CDSContig_10 1447674..1448035 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347335Trimin1|347335|estExt_Genemark1.C_Ctg_100171Tribonema minus UTEX_B_3156 polypeptideContig_10 1447674..1448461 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4368 ID=mRNA_4368|Name=jgi.p|Trimin1|347335|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=513bp|location=Sequence derived from alignment at Contig_10:1447665..1448461+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGGAGAAAATGGAGAACGTCAAGATCAAGCGCTGCGAGGGGGAGGGGTG
CACGAAGCAGCCGAACTACGCATTCCAGGGACAGAAGGCGCGGTTCTGCA
AAGGGCACGCGCAGGAGGGCATGGAGAATGTTAATCAAAGGCGCTGCAAG
GAGGAGGGGTGCAAGAAGCAGCCGTCCTTTGGTTTCCAGGGACAGAAGGC
GCTGTTCTGCAAAGGGCACGCGCAGGAGGGAATGGAGGACGTCAACACAA
AGCGCTGCGAGGGGGAGGGGTGCAGGAAGTTGCCGTCCTTCGCTTTCCAG
GGACAGAGGGCGCGGTTCTGCAAAGGGCACGCGCAAGAGGGAATGGAGAA
CGTCAGGACCAAGTGGCGGCGGGCTACCGCTGCCGCCGGTGTGGCCGCCG
CTGCTACTGCCGCCGCCGCTGCCGCCGCCGCTGCCGCCGCCTCCACCGCC
GCCGCCGCCGCCATTGTGACCGACGCTGCCACCGCCGCCGTCGCCGTTGC
CAGCCTCAGATAA
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protein sequence of jgi.p|Trimin1|347335

>Trimin1|347335|estExt_Genemark1.C_Ctg_100171 ID=Trimin1|347335|estExt_Genemark1.C_Ctg_100171|Name=jgi.p|Trimin1|347335|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=168bp
MENVKIKRCEGEGCTKQPNYAFQGQKARFCKGHAQEGMENVNQRRCKEEG
CKKQPSFGFQGQKALFCKGHAQEGMEDVNTKRCEGEGCRKLPSFAFQGQR
ARFCKGHAQEGMENVRTKWRRATAAAGVAAAATAAAAAAAAAAASTAAAA
AIVTDAATAAVAVASLR*
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mRNA from alignment at Contig_10:1447665..1448461+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4368 ID=mRNA_4368|Name=jgi.p|Trimin1|347335|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=797bp|location=Sequence derived from alignment at Contig_10:1447665..1448461+ (Tribonema minus UTEX_B_3156 )
CAGGAGAAAATGGAGAACGTCAAGATCAAGCGCTGCGAGGGGGAGGGGTG CACGAAGCAGCCGAACTACGCATTCCAGGGACAGAAGGCGCGGTTCTGCA AAGGGCACGCGCAGGAGGGCATGGAGAATGTTAATCAAAGGCGCTGCAAG GAGGAGGGGTGCAAGAAGCAGCCGTCCTTTGGTTTCCAGGGACAGAAGGC GCTGTTCTGCAAAGGGCACGCGCAGGAGGGAATGGAGGACGTCAACACAA AGCGCTGCGAGGGGGAGGGGTGCAGGAAGTTGCCGTCCTTCGCTTTCCAG GGACAGAGGGCGCGGTTCTGCAAAGGGCACGCGCAAGAGGGAATGGAGAA CGTCAGGACCAAGTGGCGGCGGTGGCGACGGGCTGGGCTGAAGCCGCCGA ACTTTGGAGCGGACGAGCAAAGCACTGCGTGACATCATCCATCCCAGCAC ACACACACACACACACACACACACACACACACACACACACACACACACAC ACCATCACACCGCTTTGATGGGCGTGCACAACGTGTTGTATGCTGCTCAT ATACATATACCCACACACGTCTACGAGTCTCCATTCCATAGCGTTACATC CCATCACCACACCCAGCAAGTAGGAGAGTCAAGAACTCCAGTACGCGAGC CCAAGGGCTACCGCTGCCGCCGGTGTGGCCGCCGCTGCTACTGCCGCCGC CGCTGCCGCCGCCGCTGCCGCCGCCTCCACCGCCGCCGCCGCCGCCATTG TGACCGACGCTGCCACCGCCGCCGTCGCCGTTGCCAGCCTCAGATAA
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Coding sequence (CDS) from alignment at Contig_10:1447665..1448461+

>mRNA_4368 ID=mRNA_4368|Name=jgi.p|Trimin1|347335|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=504bp|location=Sequence derived from alignment at Contig_10:1447665..1448461+ (Tribonema minus UTEX_B_3156 )
ATGGAGAACGTCAAGATCAAGCGCTGCGAGGGGGAGGGGTGCACGAAGCA
GCCGAACTACGCATTCCAGGGACAGAAGGCGCGGTTCTGCAAAGGGCACG
CGCAGGAGGGCATGGAGAATGTTAATCAAAGGCGCTGCAAGGAGGAGGGG
TGCAAGAAGCAGCCGTCCTTTGGTTTCCAGGGACAGAAGGCGCTGTTCTG
CAAAGGGCACGCGCAGGAGGGAATGGAGGACGTCAACACAAAGCGCTGCG
AGGGGGAGGGGTGCAGGAAGTTGCCGTCCTTCGCTTTCCAGGGACAGAGG
GCGCGGTTCTGCAAAGGGCACGCGCAAGAGGGAATGGAGAACGTCAGGAC
CAAGTGGCGGCGGGCTACCGCTGCCGCCGGTGTGGCCGCCGCTGCTACTG
CCGCCGCCGCTGCCGCCGCCGCTGCCGCCGCCTCCACCGCCGCCGCCGCC
GCCATTGTGACCGACGCTGCCACCGCCGCCGTCGCCGTTGCCAGCCTCAG
ATAA
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