mRNA_4314 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|159738 vs. uniprot
Match: A0A835ZFJ6_9STRA (TauD domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFJ6_9STRA) HSP 1 Score: 503 bits (1295), Expect = 2.550e-180 Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 1
Query: 1 MRMLRAYGIVLVTGSPTTMEGTEALATRIGVVRETLYGGMWATSAEGAEEAHNDTAYTNLALGAHTDCTYMIDPPGLQVFNCVAAAPKGGTSTYVDGFAVAAALREQDPEAFEFFARTPFKYFCHDKYHHLLAAGPVFTLGCGGQVVQVRHNDYDRAPLDHLPYGDIEAFYKHHGKLTELIRAESSILKLRLRPGDTVIADNHRTMHGREAFVGRRRMVGCYISRDDHESRARVCGLAVPPEVL 732
MRMLRAYGIVLVTGSPTTMEGTEALATRIGVVRETLYGGMWATSAEGAEEAHNDTAYTNLALGAHTDCTYMIDPPGLQVFNCVAAAPKGGTSTYVDGFAVAAALREQDPEAFEFFARTPFKYFCHDKYHHLLAAGPVFTLGCGGQVVQVRHNDYDRAPLDHLPYGDIEAFYKHHGKLTELIRAESSILKLRLRPGDTVIADNHRTMHGREAFVGRRRMVGCYISRDDHESRARVCGLAVPPEVL
Sbjct: 1 MRMLRAYGIVLVTGSPTTMEGTEALATRIGVVRETLYGGMWATSAEGAEEAHNDTAYTNLALGAHTDCTYMIDPPGLQVFNCVAAAPKGGTSTYVDGFAVAAALREQDPEAFEFFARTPFKYFCHDKYHHLLAAGPVFTLGCGGQVVQVRHNDYDRAPLDHLPYGDIEAFYKHHGKLTELIRAESSILKLRLRPGDTVIADNHRTMHGREAFVGRRRMVGCYISRDDHESRARVCGLAVPPEVL 244
BLAST of jgi.p|Trimin1|159738 vs. uniprot
Match: D7FLG7_ECTSI (TauD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLG7_ECTSI) HSP 1 Score: 276 bits (705), Expect = 4.570e-90 Identity = 140/236 (59.32%), Postives = 173/236 (73.31%), Query Frame = 1
Query: 7 MLRAYGIVLVTGSPTTMEGTEALATRIGV-VRETLYG-GMWATSAEGA--EEAHNDTAYTNLALGAHTDCTYMIDPPGLQVFNCVAAAPKGGTSTYVDGFAVAAALREQDPEAFEFFARTPFKYFCHDKYHHLLAAGPVFTLGCGGQVVQVRHNDYDRAPLDHLPYGDIEAFYKHHGKLTELIRAESSILKLRLRPGDTVIADNHRTMHGREAFVGRRRMVGCYISRDDHESRARV 702
++R++G+ LV G PT +GTEALA RIG +R TLYG GMWATSAE + EE D+AY+N L HTDC Y+ DPPG+QVFNCV A +GG S YVDGFAVA LR +PEAFEFF+RT Y C D+ H +A GPVF LG G+VVQVR+NDYDRAPLD+LP DI+ FY++H L+E+IR S + ++ L PG+ VI DNHR +HGRE+F GRRRMVGCY+ D+ S ARV
Sbjct: 35 LIRSHGVALVRGVPTDEKGTEALALRIGGHLRSTLYGPGMWATSAEASAGEEGFRDSAYSNDGLALHTDCGYLADPPGIQVFNCVVRAQEGGASIYVDGFAVADRLRATNPEAFEFFSRTSISYQCFDEGCHYMAEGPVFRLGPLGEVVQVRYNDYDRAPLDYLPNEDIDRFYEYHASLSEIIRDPSLVARIVLEPGECVILDNHRALHGRESFKGRRRMVGCYLGMDELHSSARV 270
BLAST of jgi.p|Trimin1|159738 vs. uniprot
Match: A0A6H5JNM9_9PHAE (TauD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNM9_9PHAE) HSP 1 Score: 271 bits (694), Expect = 2.830e-86 Identity = 137/236 (58.05%), Postives = 172/236 (72.88%), Query Frame = 1
Query: 7 MLRAYGIVLVTGSPTTMEGTEALATRIGV-VRETLYG-GMWATSAEGA--EEAHNDTAYTNLALGAHTDCTYMIDPPGLQVFNCVAAAPKGGTSTYVDGFAVAAALREQDPEAFEFFARTPFKYFCHDKYHHLLAAGPVFTLGCGGQVVQVRHNDYDRAPLDHLPYGDIEAFYKHHGKLTELIRAESSILKLRLRPGDTVIADNHRTMHGREAFVGRRRMVGCYISRDDHESRARV 702
++R++G+ LV G PT +GTEALA R+G +R TLYG GMWATSAE + EE D+AY+N L HTDC Y+ DPPG+QVFNCV A +GG S YVDGFAVA LR PEAFEFF+RT Y C D+ H +A GPVF LG G+VVQVR+NDYDRAPLD+L DI+ FY++H L+++IR S + ++ L PG+ VI +NHR +HGRE+F GRRRMVGCY+ D+ ES ARV
Sbjct: 193 LIRSHGVALVRGVPTDEKGTEALALRVGGHLRSTLYGPGMWATSAEASAGEEGFRDSAYSNDGLALHTDCGYLADPPGIQVFNCVVRAREGGASIYVDGFAVAERLRATSPEAFEFFSRTSISYQCFDEGCHYMAEGPVFRLGALGEVVQVRYNDYDRAPLDYLSNEDIDRFYEYHASLSKIIRDPSLVARIVLEPGECVILNNHRALHGRESFKGRRRMVGCYLGMDELESSARV 428
BLAST of jgi.p|Trimin1|159738 vs. uniprot
Match: A0A3R7J7L5_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7J7L5_9STRA) HSP 1 Score: 244 bits (623), Expect = 1.020e-75 Identity = 121/238 (50.84%), Postives = 157/238 (65.97%), Query Frame = 1
Query: 1 MRMLRAYGIVLVTGSPTTMEGTEALATRIGVVRETLYGGMWATSAEGAEEAHNDTAYTNLALGAHTDCTYMIDPPGLQVFNCVAAAPKGGTSTYVDGFAVAAALREQDPEAFEFFARTPFKYFCHDKYHHLLAAGPVFTLGCGGQVVQVRHNDYDRAPLDHLPYGDIEAFYKHHGKLTELIRAESSILKLRLRPGDTVIADNHRTMHGREAFVG-RRRMVGCYISRDDHESRARVCGL 711
MR L YG+V VTG+P TM+ TE +T+IG V T+YG MW T+ E +NDTA TNL L HTD TY++DPPGLQ+FNC+A A +GG S Y+D F V LR+++PEAF ++TP YF D+ HL P+ + G VVQ RHNDYDRAPL HL + +++AFYK H KL E++R +L+ GD +I DN R MHGR AF G R ++GCYI R ++ESR RV G+
Sbjct: 183 MRDLYTYGLVRVTGTPKTMDATEKFSTKIGFVLRTIYGTMWTTNPTNDNEDYNDTASTNLELLHHTDGTYILDPPGLQIFNCIAQAGEGGESRYIDSFHVVETLRKENPEAFRVLSQTPLPYFTVDRDAHLSTMEPLIRVDYAGNVVQFRHNDYDRAPLTHLSFEEVDAFYKAHRKLLEVMRRPEMEFCTKLQVGDMMIVDNQRVMHGRHAFNGGERALIGCYIGRTEYESRLRVLGI 420
BLAST of jgi.p|Trimin1|159738 vs. uniprot
Match: A0A8K1C7S5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C7S5_PYTOL) HSP 1 Score: 243 bits (621), Expect = 1.500e-75 Identity = 119/238 (50.00%), Postives = 158/238 (66.39%), Query Frame = 1
Query: 1 MRMLRAYGIVLVTGSPTTMEGTEALATRIGVVRETLYGGMWATSAEGAEEAHNDTAYTNLALGAHTDCTYMIDPPGLQVFNCVAAAPKGGTSTYVDGFAVAAALREQDPEAFEFFARTPFKYFCHDKYHHLLAAGPVFTLGCGGQVVQVRHNDYDRAPLDHLPYGDIEAFYKHHGKLTELIRAESSILKLRLRPGDTVIADNHRTMHGREAFVG-RRRMVGCYISRDDHESRARVCGL 711
M L YG+V+V +P++M+ TE + +IG V ET+YG MW T+ + E+ +NDTA TN+ L HTD TYM DPPGLQ+FNC+A A +GG S YVD F VA LR Q+P AFEFF +TP Y +D+ HL P+ L G +VQ RHNDYDRAPL HL + + E FYK+HG+L L+R S +++L+ G +I DN R MH R+AF G R ++GCYI R ++ESR RV +
Sbjct: 172 MEDLYKYGLVMVHATPSSMDETEKFSRKIGFVLETIYGTMWTTNPQTEEQEYNDTASTNIELLHHTDGTYMRDPPGLQIFNCIAQAGEGGDSRYVDAFHVAERLRRQNPAAFEFFTKTPLHYHHYDRDAHLATMEPIIQLDHAGNIVQFRHNDYDRAPLTHLSFEETELFYKYHGELLSLLRDPSMEFRVKLQVGQMIIVDNQRVMHARDAFSGGERALIGCYIGRTEYESRLRVLNI 409
BLAST of jgi.p|Trimin1|159738 vs. uniprot
Match: A0A5D6XF28_9STRA (Trimethyllysine dioxygenase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XF28_9STRA) HSP 1 Score: 243 bits (621), Expect = 2.680e-75 Identity = 125/238 (52.52%), Postives = 155/238 (65.13%), Query Frame = 1
Query: 1 MRMLRAYGIVLVTGSPTTMEGTEALATRIGVVRETLYGGMWATSAEGAEEAHNDTAYTNLALGAHTDCTYMIDPPGLQVFNCVAAAPKGGTSTYVDGFAVAAALREQDPEAFEFFARTPFKYFCHDKYHHLLAAGPVFTLGCGGQVVQVRHNDYDRAPLDHLPYGDIEAFYKHHGKLTELIRAESSILKLRLRPGDTVIADNHRTMHGREAFVG-RRRMVGCYISRDDHESRARVCGL 711
M L YG+V+VT +P++M TE + RIG V T+YG MW T+ + AE+ +NDTA TNL L HTD TYM DPPGLQ+FNCVA A +GG S YVD F A LR QDP AF F A TP Y D HL A PV L G VVQVR+NDYDRAPL HLP+ +E FY+HH L ++R S L+LR G+ V+ DN R +HGR AF G R ++G YI R++++SR RV G+
Sbjct: 193 MTDLYKYGLVMVTATPSSMAETERFSRRIGFVLRTIYGEMWTTNPQSAEQEYNDTASTNLELLPHTDGTYMRDPPGLQIFNCVAQAGEGGESRYVDAFHAAERLRAQDPAAFRFLAATPVNYHHFDADAHLAAMEPVIKLDHAGHVVQVRYNDYDRAPLTHLPFAAVEQFYRHHRALVRVLRDASLEATLKLRVGEMVVVDNQRVLHGRAAFDGGERSLIGSYIGRNEYDSRLRVLGI 430
BLAST of jgi.p|Trimin1|159738 vs. uniprot
Match: A0A225WPV2_9STRA (Trimethyllysine dioxygenase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WPV2_9STRA) HSP 1 Score: 236 bits (602), Expect = 1.900e-72 Identity = 119/238 (50.00%), Postives = 151/238 (63.45%), Query Frame = 1
Query: 1 MRMLRAYGIVLVTGSPTTMEGTEALATRIGVVRETLYGGMWATSAEGAEEAHNDTAYTNLALGAHTDCTYMIDPPGLQVFNCVAAAPKGGTSTYVDGFAVAAALREQDPEAFEFFARTPFKYFCHDKYHHLLAAGPVFTLGCGGQVVQVRHNDYDRAPLDHLPYGDIEAFYKHHGKLTELIRAESSILKLRLRPGDTVIADNHRTMHGREAFVGR-RRMVGCYISRDDHESRARVCGL 711
MR L AYG+V V+ +P TME TE + +IG V T+YG MW T+ +E +NDTA TNL L HTD TY+ DPPGLQ+FNC A A +GG S YVD F V LR++ PEAF + TP YF D HL P+ + G VVQ RHNDYDRAPL HL + ++ AFY H KL E++R +L+ GD ++ DNHR MHGR AF G R ++GCYI + ++ESR RV G+
Sbjct: 193 MRDLYAYGLVRVSSTPNTMEATEKFSRKIGFVMRTIYGTMWTTNPTNDDEGYNDTASTNLELLHHTDGTYIRDPPGLQIFNCAAQAGEGGESRYVDSFHVVETLRKEHPEAFRLLSTTPLPYFTVDNDAHLATMEPLIRVDYAGNVVQFRHNDYDRAPLTHLSFEEVGAFYDAHRKLLEIMRRPEMEFCTKLQVGDMLVVDNHRVMHGRHAFQGGDRALIGCYIGQTEYESRLRVLGI 430
BLAST of jgi.p|Trimin1|159738 vs. uniprot
Match: A0A2D4BN78_PYTIN (Trimethyllysine dioxygenase n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BN78_PYTIN) HSP 1 Score: 233 bits (594), Expect = 2.840e-71 Identity = 112/238 (47.06%), Postives = 155/238 (65.13%), Query Frame = 1
Query: 1 MRMLRAYGIVLVTGSPTTMEGTEALATRIGVVRETLYGGMWATSAEGAEEAHNDTAYTNLALGAHTDCTYMIDPPGLQVFNCVAAAPKGGTSTYVDGFAVAAALREQDPEAFEFFARTPFKYFCHDKYHHLLAAGPVFTLGCGGQVVQVRHNDYDRAPLDHLPYGDIEAFYKHHGKLTELIRAESSILKLRLRPGDTVIADNHRTMHGREAFVG-RRRMVGCYISRDDHESRARVCGL 711
M L YGIV+V +P++M+ TE + +IG V ET+YG MW T+ + ++ +NDTA +N+ L HTD TY+ DPPGLQ+FNC+ A +GG S YVD + V LR Q P AF+F ++TP Y D HL P+ L G VVQ RHNDYDRAPL HL + ++ FY+HH +L ++IR + + +L+ G+ +I DNHR MH R+AFVG R ++GCYI R ++ESR RV +
Sbjct: 191 MEDLHKYGIVMVHSTPSSMDETEKFSRKIGFVMETIYGKMWTTNPQTKDQQYNDTASSNIELLHHTDGTYIRDPPGLQIFNCIVQAGEGGDSRYVDAYHVVEKLRRQFPAAFDFLSKTPLHYQTFDDDAHLTTMEPIIKLDHAGNVVQFRHNDYDRAPLTHLSFDQVDEFYRHHAELLKIIRDPAMEFRHKLQVGEMIIVDNHRVMHARDAFVGGERALIGCYIGRTEYESRLRVLNI 428
BLAST of jgi.p|Trimin1|159738 vs. uniprot
Match: A0A6A3MDB6_9STRA (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=A0A6A3MDB6_9STRA) HSP 1 Score: 234 bits (597), Expect = 4.270e-71 Identity = 119/238 (50.00%), Postives = 150/238 (63.03%), Query Frame = 1
Query: 1 MRMLRAYGIVLVTGSPTTMEGTEALATRIGVVRETLYGGMWATSAEGAEEAHNDTAYTNLALGAHTDCTYMIDPPGLQVFNCVAAAPKGGTSTYVDGFAVAAALREQDPEAFEFFARTPFKYFCHDKYHHLLAAGPVFTLGCGGQVVQVRHNDYDRAPLDHLPYGDIEAFYKHHGKLTELIRAESSILKLRLRPGDTVIADNHRTMHGREAFVGR-RRMVGCYISRDDHESRARVCGL 711
MR L +YG+V V+G+P TME TE + +IG V T+YG MW T+ E +NDTA TNL L HTD TY+ DPPGLQ+FNC A A +GG S YVD F VA LR +DPEAF + T YF D HL P+ + G +VQ RHNDYDRAPL HL + ++ FYK H KL E++R ++L GD V+ DN R MHGR AF G R ++GCYI + ++ESR RV G+
Sbjct: 247 MRDLYSYGLVRVSGTPNTMEATEKFSKKIGFVLRTIYGTMWTTNPTNEAEGYNDTASTNLELLHHTDGTYIRDPPGLQIFNCAAQAGEGGESRYVDSFHVAETLRSEDPEAFRVLSTTSLPYFTLDNDAHLATMEPLIRVDYAGNIVQFRHNDYDRAPLTHLSFEEVGEFYKAHRKLLEVMRRPEMEFCMKLDVGDMVVVDNQRVMHGRHAFQGGDRALIGCYIGQTEYESRLRVLGI 484
BLAST of jgi.p|Trimin1|159738 vs. uniprot
Match: H3GGD2_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GGD2_PHYRM) HSP 1 Score: 231 bits (589), Expect = 1.870e-70 Identity = 118/238 (49.58%), Postives = 147/238 (61.76%), Query Frame = 1
Query: 1 MRMLRAYGIVLVTGSPTTMEGTEALATRIGVVRETLYGGMWATSAEGAEEAHNDTAYTNLALGAHTDCTYMIDPPGLQVFNCVAAAPKGGTSTYVDGFAVAAALREQDPEAFEFFARTPFKYFCHDKYHHLLAAGPVFTLGCGGQVVQVRHNDYDRAPLDHLPYGDIEAFYKHHGKLTELIRAESSILKLRLRPGDTVIADNHRTMHGREAFVGR-RRMVGCYISRDDHESRARVCGL 711
MR L +YG+V V+ +P TME TE + +IG V T+YG MW T+ E +NDTA TNL L HTD TYM DPPGLQ+FNC A A +GG S YVD F V LR +DPEAF + TP YF D H P+ + VVQ RHNDYDRAPL HL + ++ FYK H KL E++R +L+ GD V+ DN R MHGR AF G R ++GCYI + ++ESR RV G+
Sbjct: 197 MRDLYSYGLVRVSNTPNTMEATEKFSKKIGFVLRTIYGTMWTTNPTNETEGYNDTASTNLELLHHTDGTYMRDPPGLQIFNCAAQAGEGGESRYVDSFHVVETLRSEDPEAFRVLSTTPLPYFTVDNDAHQATMEPLIRVDYANNVVQFRHNDYDRAPLTHLSFEEVGGFYKAHRKLLEVMRRPEMEFCTKLQVGDMVVVDNQRVMHGRHAFQGGDRALIGCYIGQTEYESRLRVLGI 434 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|159738 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_4314 ID=mRNA_4314|Name=jgi.p|Trimin1|159738|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=735bp|location=Sequence derived from alignment at Contig_10:978879..983338+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCGCATGCTGCGCGCCTACGGCATCGTGCTGGTGACGGGATCGCCGACback to top protein sequence of jgi.p|Trimin1|159738 >Trimin1|159738|e_gw1.10.25.1 ID=Trimin1|159738|e_gw1.10.25.1|Name=jgi.p|Trimin1|159738|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=245bp MRMLRAYGIVLVTGSPTTMEGTEALATRIGVVRETLYGGMWATSAEGAEEback to top mRNA from alignment at Contig_10:978879..983338+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_4314 ID=mRNA_4314|Name=jgi.p|Trimin1|159738|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4460bp|location=Sequence derived from alignment at Contig_10:978879..983338+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_10:978879..983338+ >mRNA_4314 ID=mRNA_4314|Name=jgi.p|Trimin1|159738|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=735bp|location=Sequence derived from alignment at Contig_10:978879..983338+ (Tribonema minus UTEX_B_3156 )back to top |