mRNA_431 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|157273
Unique NamemRNA_431
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|157273 vs. uniprot
Match: A0A835Z6M2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6M2_9STRA)

HSP 1 Score: 305 bits (780), Expect = 2.010e-100
Identity = 291/291 (100.00%), Postives = 291/291 (100.00%), Query Frame = 1 
Query:    1 MADLVLSAQQSRLNSMDALRKELDSAFNAQAASVKDEIAALKPQAVNGAAAVPAHTATVPVPSVHAAYAARLTRKGWEDRWGDDEVARVSGDGATALQASAAPAAXXXXXXXXXXXVHPAYLARTQRAGWEDRWGSSEVQRTSGTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGAXXXXXPADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPXAAAAAPAXXXXXXXXXXXXXXAQVHPAYAARLQRPGLDARWGAEEVQRVTSAVA 873
            MADLVLSAQQSRLNSMDALRKELDSAFNAQAASVKDEIAALKPQAVNGAAAVPAHTATVPVPSVHAAYAARLTRKGWEDRWGDDEVARVSGDGATALQASAAPAAXXXXXXXXXXXVHPAYLARTQRAGWEDRWGSSEVQRTSGTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGAXXXXXPADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPXAAAAAPAXXXXXXXXXXXXXXAQVHPAYAARLQRPGLDARWGAEEVQRVTSAVA
Sbjct:    1 MADLVLSAQQSRLNSMDALRKELDSAFNAQAASVKDEIAALKPQAVNGAAAVPAHTATVPVPSVHAAYAARLTRKGWEDRWGDDEVARVSGDGATALQASAAPAAXXXXXXXXXXXVHPAYLARTQRAGWEDRWGSSEVQRTSGTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGAXXXXXPADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPXAAAAAPAXXXXXXXXXXXXXXAQVHPAYAARLQRPGLDARWGAEEVQRVTSAVA 291
[Close]
BLAST of jgi.p|Trimin1|157273 vs. uniprot
Match: D8LQH9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQH9_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 7.550e-20
Identity = 91/315 (28.89%), Postives = 118/315 (37.46%), Query Frame = 1 
Query:    1 MADLVLSAQQSRLNSMDALRKELDSAFNAQAASVKDEIAALKP--QAVNGAAAVPAHTATVPV---------------PSVHAAYAARLTRKGWEDRWGDDEVARVSGDGATALQASAAPAAXXXXXXXXXXXVHPAYLARTQRAGWEDRWGSSEVQR-------TSGTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGAXXXXXPADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPXAAAAAPAXXXXXXXXXXXXXXAQVHPAYAARLQRPGLDARWGAEEVQRVTSAVA 873
            MA+ +  A ++RL +M+A++KE+   +  Q A ++ ++AAL P   A  GAAA  A  A  PV                + H +YAAR  R GWE RWG +E AR S    TA   S+  +            VHPAY AR QR GWE+RWG  E  R       TS ++                                              GA     PA+                                      AAPA                VHPAYAAR QRPG + RWG+EE  R+T+A A
Sbjct:    1 MAEFMAKAHENRLQAMEAVKKEVQRGYEEQIADLQSKLAALPPPADADKGAAAATAFRAEEPVLVGVGQGASMGFAGGAAQHPSYAARSARPGWEARWGAEEPARAS-PAVTAADVSSMESRVAAASAPGGGAVHPAYAARAQRPGWEERWGMEEPARKTMAAASTSASAEVVPQAQGKAAAPADVHPAYAARTQRPGWEERWGAEEPARKTMTVAGAGSTSAPAEVATQAL-----------------------------GTPAAPA---------------DVHPAYAARTQRPGWEERWGSEEPARMTAATA 270
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|157273 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835Z6M2_9STRA2.010e-100100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LQH9_ECTSI7.550e-2028.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_3contigContig_3:1478865..1480064 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|157273|e_gw1.3.446.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_005710.1
TranscriptId157595
TrackFilteredModels1
ProteinId157273
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157273gene_431Tribonema minus UTEX_B_3156 geneContig_3 1478865..1480064 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157273Trimin1|157273|e_gw1.3.446.1Tribonema minus UTEX_B_3156 polypeptideContig_3 1478865..1480064 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_431_2exon_431_2Tribonema minus UTEX_B_3156 exonContig_3 1478865..1479050 -
exon_431_1exon_431_1Tribonema minus UTEX_B_3156 exonContig_3 1479375..1480064 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_431CDS_431Tribonema minus UTEX_B_3156 CDSContig_3 1479375..1480064 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_431 ID=mRNA_431|Name=jgi.p|Trimin1|157273|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=876bp|location=Sequence derived from alignment at Contig_3:1478865..1480064- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGACCTGGTGCTGAGCGCCCAGCAATCCAGGCTCAACAGCATGGA
TGCACTGCGCAAGGAGCTGGACAGCGCCTTCAACGCTCAAGCGGCCAGCG
TCAAGGACGAGATCGCAGCACTCAAGCCGCAGGCCGTCAACGGCGCCGCC
GCGGTGCCCGCCCACACCGCCACCGTGCCAGTGCCGTCGGTGCACGCTGC
GTACGCCGCCAGGCTCACACGCAAGGGATGGGAAGATCGCTGGGGGGACG
ATGAAGTGGCACGGGTCTCTGGCGACGGTGCCACAGCACTGCAGGCCTCA
GCGGCACCGGCGGCTGCGCTGGCGGCACCGGCGGCAGCGGCGGCGGCAGT
GCATCCCGCGTACCTCGCGCGCACCCAGCGCGCAGGATGGGAGGACAGGT
GGGGCTCCTCGGAAGTGCAGCGGACGTCTGGCACGAGCGCTGCTGCTGCG
CCCGCCGCCGCTGCTGCTGCCGCCGCGCAGACGGCGCAGCACCCCGCCTA
CGCGGCGCGGCTGCAGCGGCAGGGCTGGCAGGACCGCTGGGGCGCGTCCG
AAGCGGAGCGCATCGCCGGCACCGAAGGCGCAGCAGCAGCAGCAGCGCCA
GCGGATCAGCACCCCGCCTACGCTGCGCGCATGAGCCGCCCCGGCTGGGC
TGACCGCTGGGGCCGCGAAGAGGTGGTGCGCGTGGAGACCGCCGCCGGCG
GCGCGCCCGCAGCGGCCGCGGCGGCGCCGGCGGCTGCGGCGGCGCCGGCG
GCGGCAGCAGCGGCGGTGGCGCCGGCGCAGGTGCACCCTGCGTACGCGGC
GCGGCTGCAGCGGCCAGGGCTCGATGCACGGTGGGGCGCGGAGGAGGTGC
AGCGCGTTACGAGCGCTGTCGCGTGA
back to top

protein sequence of jgi.p|Trimin1|157273

>Trimin1|157273|e_gw1.3.446.1 ID=Trimin1|157273|e_gw1.3.446.1|Name=jgi.p|Trimin1|157273|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=292bp
MADLVLSAQQSRLNSMDALRKELDSAFNAQAASVKDEIAALKPQAVNGAA
AVPAHTATVPVPSVHAAYAARLTRKGWEDRWGDDEVARVSGDGATALQAS
AAPAAALAAPAAAAAAVHPAYLARTQRAGWEDRWGSSEVQRTSGTSAAAA
PAAAAAAAAQTAQHPAYAARLQRQGWQDRWGASEAERIAGTEGAAAAAAP
ADQHPAYAARMSRPGWADRWGREEVVRVETAAGGAPAAAAAAPAAAAAPA
AAAAAVAPAQVHPAYAARLQRPGLDARWGAEEVQRVTSAVA*
back to top

mRNA from alignment at Contig_3:1478865..1480064-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_431 ID=mRNA_431|Name=jgi.p|Trimin1|157273|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1200bp|location=Sequence derived from alignment at Contig_3:1478865..1480064- (Tribonema minus UTEX_B_3156 )
ATGGCGGACCTGGTGCTGAGCGCCCAGCAATCCAGGCTCAACAGCATGGA
TGCACTGCGCAAGGAGCTGGACAGCGCCTTCAACGCTCAAGCGGCCAGCG
TCAAGGACGAGATCGCAGCACTCAAGCCGCAGGCCGTCAACGGCGCCGCC
GCGGTGCCCGCCCACACCGCCACCGTGCCAGTGCCGTCGGTGCACGCTGC
GTACGCCGCCAGGCTCACACGCAAGGGATGGGAAGATCGCTGGGGGGACG
ATGAAGTGGCACGGGTCTCTGGCGACGGTGCCACAGCACTGCAGGCCTCA
GCGGCACCGGCGGCTGCGCTGGCGGCACCGGCGGCAGCGGCGGCGGCAGT
GCATCCCGCGTACCTCGCGCGCACCCAGCGCGCAGGATGGGAGGACAGGT
GGGGCTCCTCGGAAGTGCAGCGGACGTCTGGCACGAGCGCTGCTGCTGCG
CCCGCCGCCGCTGCTGCTGCCGCCGCGCAGACGGCGCAGCACCCCGCCTA
CGCGGCGCGGCTGCAGCGGCAGGGCTGGCAGGACCGCTGGGGCGCGTCCG
AAGCGGAGCGCATCGCCGGCACCGAAGGCGCAGCAGCAGCAGCAGCGCCA
GCGGATCAGCACCCCGCCTACGCTGCGCGCATGAGCCGCCCCGGCTGGGC
TGACCGCTGGGGCCGCGAAGAGGTGGTGCGCGTGGAGACCGTCGCTTCGG
ACGCCGCCGTGCCCGACCTGCTCTCGCCCTCAACCACGGCGCGCGCAGCG
GCGTCCGAGAGCGTGGCGGCGGCGGCGCTGCGCGCGGAGGTGGAGGAGCT
GCGCGCCTACCTGGCGGAGTACGCGGCGCGCGTCGGGACGGAGCGCTCGC
GGCTGACGGCGCGCGCGGAGGCGGCGGCGGCGCGCGCCGACGCACTCGCG
GCGGACCTCGCTGAGGTGCGCGGCGCGTACTCCGACTACATGGCGCGCGC
GCTCGAGGCGCGGATGACGTTCTCGGACTCGGCGCGCATGGCAGCGCTCA
GCGAGGCGCTGGAGGCCGCCGGCGGCGCGCCCGCAGCGGCCGCGGCGGCG
CCGGCGGCTGCGGCGGCGCCGGCGGCGGCAGCAGCGGCGGTGGCGCCGGC
GCAGGTGCACCCTGCGTACGCGGCGCGGCTGCAGCGGCCAGGGCTCGATG
CACGGTGGGGCGCGGAGGAGGTGCAGCGCGTTACGAGCGCTGTCGCGTGA
back to top

Coding sequence (CDS) from alignment at Contig_3:1478865..1480064-

>mRNA_431 ID=mRNA_431|Name=jgi.p|Trimin1|157273|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=876bp|location=Sequence derived from alignment at Contig_3:1478865..1480064- (Tribonema minus UTEX_B_3156 )
ATGGCGGACCTGGTGCTGAGCGCCCAGCAATCCAGGCTCAACAGCATGGA
TGCACTGCGCAAGGAGCTGGACAGCGCCTTCAACGCTCAAGCGGCCAGCG
TCAAGGACGAGATCGCAGCACTCAAGCCGCAGGCCGTCAACGGCGCCGCC
GCGGTGCCCGCCCACACCGCCACCGTGCCAGTGCCGTCGGTGCACGCTGC
GTACGCCGCCAGGCTCACACGCAAGGGATGGGAAGATCGCTGGGGGGACG
ATGAAGTGGCACGGGTCTCTGGCGACGGTGCCACAGCACTGCAGGCCTCA
GCGGCACCGGCGGCTGCGCTGGCGGCACCGGCGGCAGCGGCGGCGGCAGT
GCATCCCGCGTACCTCGCGCGCACCCAGCGCGCAGGATGGGAGGACAGGT
GGGGCTCCTCGGAAGTGCAGCGGACGTCTGGCACGAGCGCTGCTGCTGCG
CCCGCCGCCGCTGCTGCTGCCGCCGCGCAGACGGCGCAGCACCCCGCCTA
CGCGGCGCGGCTGCAGCGGCAGGGCTGGCAGGACCGCTGGGGCGCGTCCG
AAGCGGAGCGCATCGCCGGCACCGAAGGCGCAGCAGCAGCAGCAGCGCCA
GCGGATCAGCACCCCGCCTACGCTGCGCGCATGAGCCGCCCCGGCTGGGC
TGACCGCTGGGGCCGCGAAGAGGTGGTGCGCGTGGAGACCGCCGCCGGCG
GCGCGCCCGCAGCGGCCGCGGCGGCGCCGGCGGCTGCGGCGGCGCCGGCG
GCGGCAGCAGCGGCGGTGGCGCCGGCGCAGGTGCACCCTGCGTACGCGGC
GCGGCTGCAGCGGCCAGGGCTCGATGCACGGTGGGGCGCGGAGGAGGTGC
AGCGCGTTACGAGCGCTGTCGCGTGA
back to top