mRNA_4296 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|148501
Unique NamemRNA_4296
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|148501 vs. uniprot
Match: A0A836CNB9_9STRA (S-adenosyl-L-methionine-dependent methyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNB9_9STRA)

HSP 1 Score: 351 bits (901), Expect = 2.000e-122
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 1
Query:    1 LTYGEFDLDFLKLILDKHDPGPGTRFMDVGSGTGRCTLAAALLRPSWALCTGLEILPEMTAYAREVHAALLSSCGSSSGAPLARCEFVTADMYSSDGGDAASATAADYDLLFAYSTAWPSDVGDSPLYLRRLSRALAARLTVGAVVVTVDKRLRAEDGFELVMAYEGENRETGESTAYV 537
            LTYGEFDLDFLKLILDKHDPGPGTRFMDVGSGTGRCTLAAALLRPSWALCTGLEILPEMTAYAREVHAALLSSCGSSSGAPLARCEFVTADMYSSDGGDAASATAADYDLLFAYSTAWPSDVGDSPLYLRRLSRALAARLTVGAVVVTVDKRLRAEDGFELVMAYEGENRETGESTAYV
Sbjct:    1 LTYGEFDLDFLKLILDKHDPGPGTRFMDVGSGTGRCTLAAALLRPSWALCTGLEILPEMTAYAREVHAALLSSCGSSSGAPLARCEFVTADMYSSDGGDAASATAADYDLLFAYSTAWPSDVGDSPLYLRRLSRALAARLTVGAVVVTVDKRLRAEDGFELVMAYEGENRETGESTAYV 179          
BLAST of jgi.p|Trimin1|148501 vs. uniprot
Match: A0A7R9TQT8_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TQT8_9VIRI)

HSP 1 Score: 74.3 bits (181), Expect = 6.900e-13
Identity = 55/156 (35.26%), Postives = 81/156 (51.92%), Query Frame = 1
Query:    1 LTYGEFDLDFLKLILDKHDPGPGTRFMDVGSGTGRCTLAAALLRPSWALCTGLEILPEMTAY---AREVHAALLSSCGSSSGAPLARCEFVTADMYSSDGGDAASATAADYDLLFAYSTAWPSDVGDSPLYLRRLSRALAARLTVGAVVVTVDKRL 459
            L YGE  +  +K +LD      G RF+D+GSG+G+  +AAAL RP  A C G+EILP + A    A+E + AL+ S G    A  A  +F   +++++D   A        D+++ + T +P      P  +  +   LAARL  GA V  V K L
Sbjct:   67 LFYGEAPVTAIKGVLDAVGARAGERFLDLGSGSGKAVIAAALARPDLAACQGIEILPSLHAESVAAKERYDALVMSDGPRGAA--AAVDFTLGNLFAADLSSA--------DVVYCFFTCFP------PALIIDVETELAARLRPGARVAVVSKSL 206          
BLAST of jgi.p|Trimin1|148501 vs. uniprot
Match: A0A6S8C1Y0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A6S8C1Y0_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 5.640e-9
Identity = 59/193 (30.57%), Postives = 84/193 (43.52%), Query Frame = 1
Query:    1 LTYGEFDLDFLKLILDKHDPG---PGTRFMDVGSGTGRCTLAAALLRPSWALCTGLEILPEM--TAYAREVHAALLSSCGSSSGAPLARCEFVTADMYSSDGGDAASATAADYDLLFAYSTAWPSDVGDSPL--------YLRRLSRALAARLTVGAVVVTVDKRLRAEDGFELVMAYEG-ENRETGESTAYV 537
            LTYGEF+++ L+  L     G        +D+GSGTGR  + AALL P W+ C G+EI P +   A AR + A      G   G     C  V  DM                +L F Y+TA+P+   +  L        + R + R ++        + T D+ L    GF+LV      +NRET  S  Y+
Sbjct:   71 LTYGEFEIESLEECLSAATHGLKENNVDLLDIGSGTGRLVMCAALLFPEWSCCRGVEISPALYADADARRIRAENQGLLGP--GHVHFACANVLTDM---------KLEFPHTNLFFIYATAFPAPRFNEQLRAPILNDEWTRAIRRIVSTSKCKHIRIATTDRALDPHAGFDLVNVLPNVKNRETFGSALYI 252          
BLAST of jgi.p|Trimin1|148501 vs. uniprot
Match: A0A812VUJ9_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812VUJ9_9DINO)

HSP 1 Score: 60.5 bits (145), Expect = 1.870e-7
Identity = 65/185 (35.14%), Postives = 85/185 (45.95%), Query Frame = 1
Query:    1 LTYGEFDL-DFLKLILDKHDPGPGTRFMDVGSGTGRCTLAAALLRPSWALCTGLEILPEMTAYAREVHAALLSSCGSSSGAPLARCEFVTADMYSSDGGDAASATAADYDLLFAYSTAWPSDVGDSPLYLRRLSRALAARLTVGAVVVTVDKRL-RAEDGFELVMAYEGENR-----ETGESTAY 534
            LTY E +   F  L+     P PG  F+D+GSGTGR  LAAAL  PS   C G E+L  + A A    A    S GS +   LA  +     M S  G D A     D D++      W + +   P  L  + RA A RL  GA ++T+D     A  GFE ++  +G  R       GE+T Y
Sbjct:  830 LTYAEVEFAPFCALLQRVAQPQPGETFLDLGSGTGRALLAAALGFPSLRCCRGYELLEPLHAAAERAAA----SAGSLASGQLAPVDL---RMQSFLGSDVAWEEE-DVDIV------WVASLCLRPETLAEV-RARATRLRPGARILTMDPHFAEAAPGFEQILV-DGATRIPVEMSFGEATVY 998          
BLAST of jgi.p|Trimin1|148501 vs. uniprot
Match: A0A7S2S8U2_9STRA (Histone-lysine N-methyltransferase, H3 lysine-79 specific n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S8U2_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 5.490e-7
Identity = 50/159 (31.45%), Postives = 73/159 (45.91%), Query Frame = 1
Query:    1 LTYGEFDLDFLKLILDKHDPGPGTRFMDVGSGTGRCTLAAALLRPS-WALCTGLEILPEMTAYAREVHAALLSSCGSSS---GAPLARCEFVT--ADMYSSDGGDAASATAADYDLLFAYSTAWPSDVGDSPLYLRRLSRALAARLTVGAVVVTVDKRL 459
            LTYGE D      IL++  P PG  F+D+G GTGR  L+AALL    ++ C G+E+L  + A +   H     +        GA   RC       D+      +       D DL+FA ST +  +       L R   A A R+  G+ ++T+ K+L
Sbjct:  302 LTYGEVDFFSFATILEQAQPRPGQIFVDLGHGTGRAVLSAALLYGHVFSACWGIEVLAPLAAASFSAHDRYSQAVRRREWLYGALSQRCAVRVQHGDILEPQSPEETGFEWTDADLVFANSTCFTDE-------LMRGIAARAERMASGSKIITLTKQL 453          
BLAST of jgi.p|Trimin1|148501 vs. uniprot
Match: A0A7S3B7Q8_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3B7Q8_9VIRI)

HSP 1 Score: 57.8 bits (138), Expect = 8.130e-7
Identity = 46/162 (28.40%), Postives = 74/162 (45.68%), Query Frame = 1
Query:    1 LTYGEFDLDFLKLILDKHDPGPGTRFMDVGSGTGRCTLAAALLRPSWALCTGLEILPEMTAYAREVHAAL---------LSSCGSSSGAPLARCEFVTADMYSSDGGDAASATAADYDLLFAYSTAWPSDVGDSPLYLRRLSRALAARLTVGAVVVTVDKRL 459
            L YGE  L+ +  +LD      G  F+D+GSG+G+  +AAAL+RP  A   G+EILPE+   A      +         L  CG+           + AD+ ++D             +++ +ST +P  + D       +  A+AA++  G   V V K+L
Sbjct:  113 LFYGEASLEAVARVLDAAHAREGDTFLDLGSGSGKAVIAAALVRPDLASVRGIEILPELHTEALAAQQRMPPDRAWPRVLFECGN----------LLEADLRAAD-------------VVYFFSTCFPRALCDE------VELAVAAQMKAGGRFVCVSKQL 245          
BLAST of jgi.p|Trimin1|148501 vs. uniprot
Match: S9P4K3_9DELT (Histone-lysine N-methyltransferase, H3 lysine-79 specific n=3 Tax=Cystobacter TaxID=42 RepID=S9P4K3_9DELT)

HSP 1 Score: 56.2 bits (134), Expect = 1.770e-6
Identity = 43/122 (35.25%), Postives = 60/122 (49.18%), Query Frame = 1
Query:    4 TYGEFDLDFLKLILDKHDPGPGTRFMDVGSGTGRCTLAAALLRPSWALCTGLEILPEMTAYAREVHAALLSSCGSSSGAPLA--RCEFVTADMYSSDGGDAASATAADYDLLFAYSTAWPSD 363
            TYGE        +L++  PGPG  F D+GSGTG+ TL AAL  P ++   G+E+ P +   AR+V A   +       A  A  R EF+  D    D   A        D+LFA+ T +P +
Sbjct:   38 TYGEVVPLAFHDVLNEAAPGPGEVFFDLGSGTGKATLLAALTFP-FSRVVGIELFPGLGDAARKVLARYEAEVRPQLPAEYAQQRIEFIDGDFLEQDLSSA--------DVLFAHGTCYPQE 150          
BLAST of jgi.p|Trimin1|148501 vs. uniprot
Match: A0A813A5Y3_9DINO (ANK1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813A5Y3_9DINO)

HSP 1 Score: 57.0 bits (136), Expect = 2.930e-6
Identity = 56/165 (33.94%), Postives = 77/165 (46.67%), Query Frame = 1
Query:    1 LTYGEFDLDFLKLILDK-HDPGPGTRFMDVGSGTGRCTLAAALLRPSWALCTGLEILPEMTAYAREVHAALLSSCGSSSGAPLARCEFVTADMYSSDGGDAASATAADYDLLFAYSTAWPSDVGDSPLYLRRLSRALAARLTVGAVVVTVDKRL-RAEDGFELVM 489
            LTY E +    + +L +   P PG  F+D+GSGTGR  L AAL  PS   C G E+L  + A A    A    S GS +   LA  +     M S  G DA      D D++      W + +   P  L  + RA A RL  GA ++T+D     +  GFE ++
Sbjct:  943 LTYAEVEFAPFRALLQRVAQPQPGETFLDLGSGTGRAVLVAALGFPSLRCCRGYELLEPLHAAAERAAA----SAGSLASGQLAPVDL---RMQSFLGPDAVWEEE-DVDIV------WVASLCLRPETLAEV-RARATRLRPGARILTMDPHFAESSPGFETIV 1092          
BLAST of jgi.p|Trimin1|148501 vs. uniprot
Match: A0A1Q9EUD7_SYMMI (Ankyrin-1 n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9EUD7_SYMMI)

HSP 1 Score: 57.0 bits (136), Expect = 3.010e-6
Identity = 56/165 (33.94%), Postives = 77/165 (46.67%), Query Frame = 1
Query:    1 LTYGEFDLDFLKLILDK-HDPGPGTRFMDVGSGTGRCTLAAALLRPSWALCTGLEILPEMTAYAREVHAALLSSCGSSSGAPLARCEFVTADMYSSDGGDAASATAADYDLLFAYSTAWPSDVGDSPLYLRRLSRALAARLTVGAVVVTVDKRL-RAEDGFELVM 489
            LTY E +    + +L +   P PG  F+D+GSGTGR  L AAL  PS   C G E+L  + A A    A    S GS +   LA  +     M S  G DA      D D++      W + +   P  L  + RA A RL  GA ++T+D     +  GFE ++
Sbjct: 1279 LTYAEVEFAPFRALLQRVAQPQPGETFLDLGSGTGRAVLVAALGFPSLRCCRGYELLEPLHAAAERAAA----SAGSLASGQLAPVDL---RMQSFLGPDAVWEEE-DVDIV------WVASLCLRPETLAEV-RARATRLRPGARILTMDPHFAESSPGFETIV 1428          
BLAST of jgi.p|Trimin1|148501 vs. uniprot
Match: UPI0013E294E3 (class I SAM-dependent methyltransferase n=1 Tax=Actinoplanes sp. LAM7112 TaxID=2486853 RepID=UPI0013E294E3)

HSP 1 Score: 53.1 bits (126), Expect = 1.690e-5
Identity = 29/78 (37.18%), Postives = 45/78 (57.69%), Query Frame = 1
Query:   34 KLILDKHDPG--PGTRFMDVGSGTGRCTLAAALLRPSWALCTGLEILPEMTAYAREVHAALLSSCGSSSGAPLARCEF 261
            +++ D H+ G   GTR +DVG+G GR   A AL  PSW +  G+++ P+M AYAR+  +A+  + G  +  P     F
Sbjct:   24 RVVADAHEAGLPAGTRVLDVGTGPGRVPRALALAEPSW-IVEGVDLSPQMIAYARQRSSAVSYAVGDVAALPYPDASF 100          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|148501 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A836CNB9_9STRA2.000e-122100.00S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A7R9TQT8_9VIRI6.900e-1335.26Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
A0A6S8C1Y0_9STRA5.640e-930.57Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A812VUJ9_9DINO1.870e-735.14Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]
A0A7S2S8U2_9STRA5.490e-731.45Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]
A0A7S3B7Q8_9VIRI8.130e-728.40Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
S9P4K3_9DELT1.770e-635.25Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]
A0A813A5Y3_9DINO2.930e-633.94ANK1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A1Q9EUD7_SYMMI3.010e-633.94Ankyrin-1 n=3 Tax=Symbiodinium TaxID=2949 RepID=A0... [more]
UPI0013E294E31.690e-537.18class I SAM-dependent methyltransferase n=1 Tax=Ac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_10contigContig_10:647217..647834 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|148501|gw1.10.206.1
Max annot lvl2759|Eukaryota
EggNOG OGs2E4FE@1|root,2SBC3@2759|Eukaryota
Evalue5.49e-18
Seed ortholog2903.EOD22803
Hectar predicted targeting categoryother localisation
TranscriptId148823
TrackFilteredModels1
ProteinId148501
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|148501gene_4296Tribonema minus UTEX_B_3156 geneContig_10 647217..647834 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4296_1exon_4296_1Tribonema minus UTEX_B_3156 exonContig_10 647217..647534 +
exon_4296_2exon_4296_2Tribonema minus UTEX_B_3156 exonContig_10 647616..647834 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4296CDS_4296Tribonema minus UTEX_B_3156 CDSContig_10 647217..647534 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|148501Trimin1|148501|gw1.10.206.1Tribonema minus UTEX_B_3156 polypeptideContig_10 647217..647834 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4296 ID=mRNA_4296|Name=jgi.p|Trimin1|148501|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=537bp|location=Sequence derived from alignment at Contig_10:647217..647834+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTCACGTACGGCGAATTCGACCTCGACTTCTTGAAGTTGATCCTCGATAA
GCACGATCCCGGCCCCGGCACACGCTTCATGGACGTCGGCAGCGGCACGG
GGCGCTGCACCCTCGCAGCGGCGCTGCTGCGCCCGTCGTGGGCGCTGTGC
ACGGGGCTCGAGATACTGCCGGAGATGACGGCGTACGCGCGCGAGGTGCA
CGCAGCGCTGCTCAGCAGCTGTGGCAGCAGTAGCGGCGCTCCGCTCGCGC
GCTGCGAGTTCGTCACCGCCGACATGTACAGCAGCGATGGCGGCGACGCT
GCGTCAGCCACGGCGGCGGACTACGACCTGCTGTTTGCGTACAGCACGGC
GTGGCCGAGCGACGTGGGCGACTCTCCGCTGTACCTGCGACGCCTGTCGC
GCGCGCTCGCTGCGCGCTTAACCGTAGGCGCAGTTGTCGTCACGGTCGAC
AAGCGGCTGCGCGCGGAGGACGGCTTTGAGCTTGTCATGGCGTATGAGGG
GGAGAACCGCGAGACGGGGGAGTCGACCGCGTACGTG
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protein sequence of jgi.p|Trimin1|148501

>Trimin1|148501|gw1.10.206.1 ID=Trimin1|148501|gw1.10.206.1|Name=jgi.p|Trimin1|148501|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=179bp
LTYGEFDLDFLKLILDKHDPGPGTRFMDVGSGTGRCTLAAALLRPSWALC
TGLEILPEMTAYAREVHAALLSSCGSSSGAPLARCEFVTADMYSSDGGDA
ASATAADYDLLFAYSTAWPSDVGDSPLYLRRLSRALAARLTVGAVVVTVD
KRLRAEDGFELVMAYEGENRETGESTAYV
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mRNA from alignment at Contig_10:647217..647834+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4296 ID=mRNA_4296|Name=jgi.p|Trimin1|148501|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=618bp|location=Sequence derived from alignment at Contig_10:647217..647834+ (Tribonema minus UTEX_B_3156 )
CTCACGTACGGCGAATTCGACCTCGACTTCTTGAAGTTGATCCTCGATAA GCACGATCCCGGCCCCGGCACACGCTTCATGGACGTCGGCAGCGGCACGG GGCGCTGCACCCTCGCAGCGGCGCTGCTGCGCCCGTCGTGGGCGCTGTGC ACGGGGCTCGAGATACTGCCGGAGATGACGGCGTACGCGCGCGAGGTGCA CGCAGCGCTGCTCAGCAGCTGTGGCAGCAGTAGCGGCGCTCCGCTCGCGC GCTGCGAGTTCGTCACCGCCGACATGTACAGCAGCGATGGCGGCGACGCT GCGTCAGCCACGGCGGCGGTGGCGGATTTGGTGTACGCTAGCGACGATGA CCCTGCGCCAGCTGCGGTTACGGATACGCTGGCGCGCGTGCGCTGGGAGG ACTACGACCTGCTGTTTGCGTACAGCACGGCGTGGCCGAGCGACGTGGGC GACTCTCCGCTGTACCTGCGACGCCTGTCGCGCGCGCTCGCTGCGCGCTT AACCGTAGGCGCAGTTGTCGTCACGGTCGACAAGCGGCTGCGCGCGGAGG ACGGCTTTGAGCTTGTCATGGCGTATGAGGGGGAGAACCGCGAGACGGGG GAGTCGACCGCGTACGTG
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Coding sequence (CDS) from alignment at Contig_10:647217..647834+

>mRNA_4296 ID=mRNA_4296|Name=jgi.p|Trimin1|148501|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=537bp|location=Sequence derived from alignment at Contig_10:647217..647834+ (Tribonema minus UTEX_B_3156 )
CTCACGTACGGCGAATTCGACCTCGACTTCTTGAAGTTGATCCTCGATAA
GCACGATCCCGGCCCCGGCACACGCTTCATGGACGTCGGCAGCGGCACGG
GGCGCTGCACCCTCGCAGCGGCGCTGCTGCGCCCGTCGTGGGCGCTGTGC
ACGGGGCTCGAGATACTGCCGGAGATGACGGCGTACGCGCGCGAGGTGCA
CGCAGCGCTGCTCAGCAGCTGTGGCAGCAGTAGCGGCGCTCCGCTCGCGC
GCTGCGAGTTCGTCACCGCCGACATGTACAGCAGCGATGGCGGCGACGCT
GCGTCAGCCACGGCGGCGGACTACGACCTGCTGTTTGCGTACAGCACGGC
GTGGCCGAGCGACGTGGGCGACTCTCCGCTGTACCTGCGACGCCTGTCGC
GCGCGCTCGCTGCGCGCTTAACCGTAGGCGCAGTTGTCGTCACGGTCGAC
AAGCGGCTGCGCGCGGAGGACGGCTTTGAGCTTGTCATGGCGTATGAGGG
GGAGAACCGCGAGACGGGGGAGTCGACCGCGTACGTG
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