mRNA_4274 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|146954
Unique NamemRNA_4274
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|146954 vs. uniprot
Match: A0A835ZFC1_9STRA (HECT domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFC1_9STRA)

HSP 1 Score: 389 bits (998), Expect = 8.050e-137
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 1 
Query:    1 LVVSQEPAPVTLENVQGFVRRLCCNQYIKPRAKALDWIKQGFSRHSMHLPTLNSFTRQELRDMYSGNETVSEADFIECLSFEDAENFQWGSEEMTATRGYLLQAVKDEAFRKRLLHWSTGYNAIPFAATRKFAIKVKPGISLNDNTVSILPDGLPEASTCINELRLPCYSSLAKLRERMDMAMAVLSFNEQ 573
            LVVSQEPAPVTLENVQGFVRRLCCNQYIKPRAKALDWIKQGFSRHSMHLPTLNSFTRQELRDMYSGNETVSEADFIECLSFEDAENFQWGSEEMTATRGYLLQAVKDEAFRKRLLHWSTGYNAIPFAATRKFAIKVKPGISLNDNTVSILPDGLPEASTCINELRLPCYSSLAKLRERMDMAMAVLSFNEQ
Sbjct:    1 LVVSQEPAPVTLENVQGFVRRLCCNQYIKPRAKALDWIKQGFSRHSMHLPTLNSFTRQELRDMYSGNETVSEADFIECLSFEDAENFQWGSEEMTATRGYLLQAVKDEAFRKRLLHWSTGYNAIPFAATRKFAIKVKPGISLNDNTVSILPDGLPEASTCINELRLPCYSSLAKLRERMDMAMAVLSFNEQ 191
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BLAST of jgi.p|Trimin1|146954 vs. uniprot
Match: A0A836CG86_9STRA (HECT domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG86_9STRA)

HSP 1 Score: 265 bits (678), Expect = 3.810e-88
Identity = 127/184 (69.02%), Postives = 152/184 (82.61%), Query Frame = 1 
Query:   22 APVTLENVQGFVRRLCCNQYIKPRAKALDWIKQGFSRHSMHLPTLNSFTRQELRDMYSGNETVSEADFIECLSFEDAENFQWGSEEMTATRGYLLQAVKDEAFRKRLLHWSTGYNAIPFAATRKFAIKVKPGISLNDNTVSILPDGLPEASTCINELRLPCYSSLAKLRERMDMAMAVLSFNEQ 573
            A +TL NV+ FVR+LC NQY++PRAKAL WI+QGFSRH  H PTL+ FTR ELR+MYSGNETVSEADF+ CL+F+DA NF+WGS EMTATRGYLLQAV DE+FR++LL WSTGY+AIP    +KF I+V+PGI  +D  VSILPD LPEASTC NELR+P Y+SLAKL+E M  AMAV +F+ Q
Sbjct:    2 AALTLGNVEDFVRKLCFNQYMRPRAKALYWIRQGFSRHDTHFPTLSMFTRPELREMYSGNETVSEADFVACLNFKDANNFKWGSPEMTATRGYLLQAVHDESFRRQLLRWSTGYSAIPCVVNKKFMIRVQPGIRTSDGAVSILPDRLPEASTCFNELRVPSYTSLAKLQEAMATAMAVNTFDTQ 185
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BLAST of jgi.p|Trimin1|146954 vs. uniprot
Match: A0A836CFB7_9STRA (HECT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFB7_9STRA)

HSP 1 Score: 264 bits (674), Expect = 1.550e-87
Identity = 127/184 (69.02%), Postives = 149/184 (80.98%), Query Frame = 1 
Query:   22 APVTLENVQGFVRRLCCNQYIKPRAKALDWIKQGFSRHSMHLPTLNSFTRQELRDMYSGNETVSEADFIECLSFEDAENFQWGSEEMTATRGYLLQAVKDEAFRKRLLHWSTGYNAIPFAATRKFAIKVKPGISLNDNTVSILPDGLPEASTCINELRLPCYSSLAKLRERMDMAMAVLSFNEQ 573
            APVTL+NV+ FVR+LC NQY+KPRAKAL WI QGF  H  H PTL+ FTR+ELR+MYSGNETVSEADF+ CLSFEDA +++W S  M ATRGYLL+A++DEAFRK+LL WSTGY AIP+A  +KF IKV+PGI  +D  V+I  D LPEASTC NELRLP YSSLAKL+E M  AMAV +FN Q
Sbjct:    2 APVTLDNVEDFVRKLCFNQYMKPRAKALYWITQGFGSHDTHFPTLSMFTREELREMYSGNETVSEADFVACLSFEDANSYKWSSRAMRATRGYLLEAIQDEAFRKQLLRWSTGYTAIPYAVNKKFIIKVQPGIRTSDGRVTIHQDRLPEASTCFNELRLPSYSSLAKLQEAMATAMAVNTFNVQ 185
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BLAST of jgi.p|Trimin1|146954 vs. uniprot
Match: A0A835Z2F9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2F9_9STRA)

HSP 1 Score: 273 bits (698), Expect = 1.840e-81
Identity = 132/183 (72.13%), Postives = 154/183 (84.15%), Query Frame = 1 
Query:   25 PVTLENVQGFVRRLCCNQYIKPRAKALDWIKQGFSRHSMHLPTLNSFTRQELRDMYSGNETVSEADFIECLSFEDAENFQWGSEEMTATRGYLLQAVKDEAFRKRLLHWSTGYNAIPFAATRKFAIKVKPGISLNDNTVSILPDGLPEASTCINELRLPCYSSLAKLRERMDMAMAVLSFNEQ 573
            PVTL+NV+ FVR+LC NQY++PRAKAL WIKQGFSRH  H PTL+ FTR ELR+MYSGNETVSEADF+ CL+FED +NF+ GS EMTATRGYLLQAV+DEAFR++LL WSTGY AIP A  +KFAIKV+PGI  +D  +SILPD LPEASTC NELRLP Y+SLAKL++ M  AMAV +FN Q
Sbjct: 1412 PVTLDNVEDFVRKLCVNQYMQPRAKALYWIKQGFSRHDTHFPTLSMFTRPELREMYSGNETVSEADFVACLTFEDVKNFKCGSPEMTATRGYLLQAVQDEAFRRQLLRWSTGYTAIPSAVNKKFAIKVQPGIRTSDGALSILPDRLPEASTCFNELRLPSYTSLAKLQQAMGTAMAVNTFNVQ 1594
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BLAST of jgi.p|Trimin1|146954 vs. uniprot
Match: A0A835Z2E6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2E6_9STRA)

HSP 1 Score: 265 bits (678), Expect = 9.570e-79
Identity = 127/176 (72.16%), Postives = 148/176 (84.09%), Query Frame = 1 
Query:   25 PVTLENVQGFVRRLCCNQYIKPRAKALDWIKQGFSRHSMHLPTLNSFTRQELRDMYSGNETVSEADFIECLSFEDAENFQWGSEEMTATRGYLLQAVKDEAFRKRLLHWSTGYNAIPFAATRKFAIKVKPGISLNDNTVSILPDGLPEASTCINELRLPCYSSLAKLRERMDMAMA 552
            PVTL+NV+ FVR+LC NQY++PRAKAL WIKQGFSRH  H PTL+ FTR ELR+M SGNETVSEADF+ CLSFED +NF+WGS EM ATRGYLLQAV+DEAFR++LL WSTGY AIPFA  +KFAIKV+PGI  +D T+SI  D LPEASTC NELR+P Y+SLAKL++ M  AMA
Sbjct: 2975 PVTLDNVEDFVRKLCFNQYMRPRAKALYWIKQGFSRHDTHFPTLSMFTRPELREMCSGNETVSEADFVACLSFEDVKNFKWGSPEMIATRGYLLQAVQDEAFRRQLLRWSTGYTAIPFAVNKKFAIKVQPGIRTSDGTMSIRADRLPEASTCFNELRVPSYTSLAKLQQAMGTAMA 3150
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BLAST of jgi.p|Trimin1|146954 vs. uniprot
Match: A0A835ZID8_9STRA (HECT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZID8_9STRA)

HSP 1 Score: 145 bits (367), Expect = 4.880e-42
Identity = 75/89 (84.27%), Postives = 78/89 (87.64%), Query Frame = 1 
Query:  307 QAVKDEAFRKRLLHWSTGYNAIPFAATRKFAIKVKPGISLNDNTVSILPDGLPEASTCINELRLPCYSSLAKLRERMDMAMAVLSFNEQ 573
            QAVKDEAFR+RLLHWSTGYNAIPFAA RKFAIKVKPGIS    TVSIL D LPEASTC NELRLP YSSLAKL+E MDMAMAV SF+EQ
Sbjct:   14 QAVKDEAFRRRLLHWSTGYNAIPFAANRKFAIKVKPGISTVCGTVSILADRLPEASTCFNELRLPSYSSLAKLQEVMDMAMAVHSFDEQ 102
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BLAST of jgi.p|Trimin1|146954 vs. uniprot
Match: A0A835ZA55_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA55_9STRA)

HSP 1 Score: 149 bits (377), Expect = 2.450e-38
Identity = 83/181 (45.86%), Postives = 113/181 (62.43%), Query Frame = 1 
Query:   43 VQGFVRRLCCNQYIKPRAKALDWIKQGFSRHSMHLPTLNSFTRQELRDMYSGNETVSEADFIECLSFEDAENFQWGSEEMTATRGYLLQAVKDEAFRKRLLHWSTGYNAIPFA--ATRKFAIKVKPGISLNDNTVSILPDG--LPEASTCINELRLPCYSSLAKLRERMDMAMAVLSFNEQ 573
            +  FVR L   ++IK RA+ L WI  GF     +L TL +FTR+ELRDM+SG E VSE    +CL F+D +N +W S     TR YLLQA++   FR++LL W+TG +AI  A  +T    I V+PG+S +D   ++  DG  LPEASTC +ELRLP Y+SL  L  +M+ AM   +F  +
Sbjct:  783 IPAFVRTLFYKRFIKTRARVLGWITDGFRWEQTNLVTLQTFTRRELRDMFSGIENVSEEQLKQCLHFKDRDNLKWSSPNFKKTRQYLLQALESAEFRQKLLRWTTGLSAIAAANGSTPSVKITVRPGVS-SDAGSALTIDGEYLPEASTCGSELRLPAYASLDALVAKMEQAMVQTTFESK 962
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BLAST of jgi.p|Trimin1|146954 vs. uniprot
Match: A0A836CI21_9STRA (HECT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI21_9STRA)

HSP 1 Score: 121 bits (304), Expect = 8.840e-29
Identity = 55/74 (74.32%), Postives = 63/74 (85.14%), Query Frame = 1 
Query:   25 PVTLENVQGFVRRLCCNQYIKPRAKALDWIKQGFSRHSMHLPTLNSFTRQELRDMYSGNETVSEADFIECLSFE 246
            PVTL+NV+ FVR+LC NQY+KPRAKAL WI QGF  H  H PTL+ FTR+ELR+MYSGNETVSEADF+ CLSFE
Sbjct:  486 PVTLDNVEDFVRKLCFNQYMKPRAKALYWITQGFGSHDTHFPTLSMFTREELREMYSGNETVSEADFVACLSFE 559
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BLAST of jgi.p|Trimin1|146954 vs. uniprot
Match: A0A836CGI2_9STRA (HECT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGI2_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.400e-10
Identity = 35/57 (61.40%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:  406 VKPGISLNDNTVSILPDGLPEASTCINELRLPCYSSLAKLRERMDMAMA-VLSFNEQ 573
            V+ GI  +D  VSILPD LPEASTC NELR+P Y+SLA L+E M  AMA + +FN Q
Sbjct:    9 VQLGIRTSDGAVSILPDRLPEASTCFNELRVPSYTSLAALQEAMSTAMAAIFTFNVQ 65
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BLAST of jgi.p|Trimin1|146954 vs. uniprot
Match: A0A072PWW2_9EURO (HECT-type E3 ubiquitin transferase n=1 Tax=Exophiala aquamarina CBS 119918 TaxID=1182545 RepID=A0A072PWW2_9EURO)

HSP 1 Score: 57.4 bits (137), Expect = 3.000e-6
Identity = 55/189 (29.10%), Postives = 89/189 (47.09%), Query Frame = 1 
Query:    1 LVVSQEPAPVTLENVQGFVRRLCCNQYIKPRAKALDWIKQGFSRHSMHLPTLNSFTRQELRDMYSGNETVSEADFIECLSFEDAENFQWGSEEMTATRGYLLQAVKD--EAFRKRLLHWSTGYNAIPFAA----TRKFAIKVKPGISLNDNTVSILPDGLPEASTCINELRLPCYSSLAKLRERMDMAM 549
            L  + +  PVT++NVQ +V ++          + ++  + GFS+   + PTL +FT  EL  ++     V+E   IE L   D+     G    + +   LLQ + +   A R+  L + TG   +P       T  F +  KP      +      D LP   TC+N L+LP YS+ AKL+ER+ +A+
Sbjct: 1710 LAENGQEIPVTMDNVQDYVDKVLDLSLGSGVRRQVEAFQTGFSQVFAY-PTLKAFTPDELVMLFG---RVNEDWSIETLM--DSVKADHGFNMDSKSVKNLLQTMSELTPAQRRDFLQFVTGSPKLPIGGFKSLTPMFTVVCKPSEPPYSSD-----DYLPSVMTCVNYLKLPDYSTQAKLKERLFVAI 1887
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|146954 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A835ZFC1_9STRA8.050e-137100.00HECT domain-containing protein (Fragment) n=1 Tax=... [more]
A0A836CG86_9STRA3.810e-8869.02HECT domain-containing protein (Fragment) n=1 Tax=... [more]
A0A836CFB7_9STRA1.550e-8769.02HECT domain-containing protein n=1 Tax=Tribonema m... [more]
A0A835Z2F9_9STRA1.840e-8172.13Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z2E6_9STRA9.570e-7972.16Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZID8_9STRA4.880e-4284.27HECT domain-containing protein n=1 Tax=Tribonema m... [more]
A0A835ZA55_9STRA2.450e-3845.86Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CI21_9STRA8.840e-2974.32HECT domain-containing protein n=1 Tax=Tribonema m... [more]
A0A836CGI2_9STRA1.400e-1061.40HECT domain-containing protein n=1 Tax=Tribonema m... [more]
A0A072PWW2_9EURO3.000e-629.10HECT-type E3 ubiquitin transferase n=1 Tax=Exophia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_10contigContig_10:486888..489126 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|146954|gw1.10.185.1
BRITEko00000,ko00001,ko01000,ko04121
KEGG Pathwayko04120,map04120
KEGG koko:K10593
EC2.3.2.26
GOsGO:0000003,GO:0000209,GO:0000280,GO:0000910,GO:0001654,GO:0001817,GO:0001818,GO:0002009,GO:0002165,GO:0002791,GO:0002792,GO:0003006,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006282,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0006997,GO:0007049,GO:0007112,GO:0007140,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007289,GO:0007423,GO:0007444,GO:0007446,GO:0007455,GO:0007548,GO:0007552,GO:0007560,GO:0008150,GO:0008152,GO:0008283,GO:0008406,GO:0008585,GO:0008589,GO:0009056,GO:0009057,GO:0009653,GO:0009719,GO:0009725,GO:0009755,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010033,GO:0010468,GO:0010604,GO:0010605,GO:0010628,GO:0010639,GO:0010646,GO:0010647,GO:0010648,GO:0014070,GO:0016043,GO:0016567,GO:0016740,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019904,GO:0019941,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030111,GO:0030154,GO:0030162,GO:0030163,GO:0030177,GO:0030518,GO:0030522,GO:0031056,GO:0031057,GO:0031323,GO:0031324,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031647,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032386,GO:0032388,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032660,GO:0032700,GO:0032870,GO:0032879,GO:0032880,GO:0032991,GO:0033043,GO:0033044,GO:0033157,GO:0033158,GO:0033160,GO:0033182,GO:0033183,GO:0033206,GO:0033554,GO:0033993,GO:0034450,GO:0035214,GO:0035220,GO:0035239,GO:0035265,GO:0035295,GO:0036211,GO:0040007,GO:0042221,GO:0042306,GO:0042307,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043401,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045137,GO:0045738,GO:0045879,GO:0045934,GO:0046545,GO:0046660,GO:0046822,GO:0046824,GO:0048232,GO:0048285,GO:0048468,GO:0048471,GO:0048513,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0048563,GO:0048569,GO:0048583,GO:0048584,GO:0048585,GO:0048589,GO:0048608,GO:0048609,GO:0048707,GO:0048729,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0050707,GO:0050708,GO:0050709,GO:0050710,GO:0050789,GO:0050794,GO:0050847,GO:0050896,GO:0051046,GO:0051048,GO:0051049,GO:0051050,GO:0051051,GO:0051052,GO:0051053,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051222,GO:0051223,GO:0051224,GO:0051239,GO:0051241,GO:0051246,GO:0051248,GO:0051301,GO:0051321,GO:0051603,GO:0051704,GO:0051716,GO:0060255,GO:0060341,GO:0060429,GO:0060562,GO:0060828,GO:0061458,GO:0061630,GO:0061640,GO:0061659,GO:0065007,GO:0065008,GO:0070013,GO:0070201,GO:0070647,GO:0070887,GO:0070936,GO:0071310,GO:0071383,GO:0071396,GO:0071407,GO:0071495,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090087,GO:0090263,GO:0090316,GO:0140013,GO:0140096,GO:1900044,GO:1900045,GO:1900180,GO:1900182,GO:1901314,GO:1901315,GO:1901564,GO:1901565,GO:1901575,GO:1902275,GO:1902914,GO:1902915,GO:1903046,GO:1903320,GO:1903321,GO:1903530,GO:1903531,GO:1903827,GO:1903829,GO:1904589,GO:1904591,GO:1904950,GO:1904951,GO:1905076,GO:1905077,GO:1905268,GO:2000779,GO:2000780,GO:2001020,GO:2001021,GO:2001251
Preferred nameUBR5
Descriptionubiquitin-protein
COG categoryO
Max annot lvl33208|Metazoa
EggNOG OGsCOG5021@1|root,KOG0943@2759|Eukaryota,38C0M@33154|Opisthokonta,3BEYS@33208|Metazoa,3CW7E@33213|Bilateria,41USJ@6656|Arthropoda,3SGN1@50557|Insecta,44X9A@7147|Diptera,45H64@7148|Nematocera
Evalue2.05e-07
Seed ortholog7165.AGAP001780-PA
Hectar predicted targeting categoryother localisation
TranscriptId147276
TrackFilteredModels1
ProteinId146954
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|146954gene_4274Tribonema minus UTEX_B_3156 geneContig_10 486888..489126 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4274_1exon_4274_1Tribonema minus UTEX_B_3156 exonContig_10 486888..487196 +
exon_4274_2exon_4274_2Tribonema minus UTEX_B_3156 exonContig_10 487918..488013 +
exon_4274_3exon_4274_3Tribonema minus UTEX_B_3156 exonContig_10 488959..489126 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4274CDS_4274Tribonema minus UTEX_B_3156 CDSContig_10 486888..487196 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|146954Trimin1|146954|gw1.10.185.1Tribonema minus UTEX_B_3156 polypeptideContig_10 486888..489126 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4274 ID=mRNA_4274|Name=jgi.p|Trimin1|146954|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=573bp|location=Sequence derived from alignment at Contig_10:486888..489126+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TTGGTGGTGTCTCAGGAACCAGCACCAGTGACGCTGGAGAACGTGCAAGG
GTTTGTACGCAGGCTGTGCTGCAACCAGTACATCAAGCCGCGCGCCAAGG
CCCTGGACTGGATCAAGCAGGGCTTCAGCCGCCACAGTATGCACCTCCCA
ACACTGAACTCTTTCACGCGCCAGGAGCTGCGTGACATGTACAGCGGCAA
TGAGACTGTCAGCGAGGCCGACTTCATTGAGTGTCTCAGCTTCGAAGATG
CCGAAAACTTTCAGTGGGGCAGCGAAGAGATGACCGCAACAAGGGGCTAT
CTACTGCAGGCAGTGAAGGATGAGGCGTTCAGGAAGCGCCTGTTGCACTG
GAGCACCGGCTACAACGCCATACCTTTCGCCGCCACCAGGAAATTTGCCA
TCAAGGTGAAGCCTGGCATCAGCCTCAACGATAACACAGTGAGCATACTG
CCTGACGGGCTGCCGGAGGCGTCCACGTGCATCAACGAGCTCCGCCTCCC
CTGCTATTCGAGCCTGGCAAAGCTTCGAGAGCGCATGGACATGGCCATGG
CAGTTCTCAGCTTCAATGAGCAG
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protein sequence of jgi.p|Trimin1|146954

>Trimin1|146954|gw1.10.185.1 ID=Trimin1|146954|gw1.10.185.1|Name=jgi.p|Trimin1|146954|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=191bp
LVVSQEPAPVTLENVQGFVRRLCCNQYIKPRAKALDWIKQGFSRHSMHLP
TLNSFTRQELRDMYSGNETVSEADFIECLSFEDAENFQWGSEEMTATRGY
LLQAVKDEAFRKRLLHWSTGYNAIPFAATRKFAIKVKPGISLNDNTVSIL
PDGLPEASTCINELRLPCYSSLAKLRERMDMAMAVLSFNEQ
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mRNA from alignment at Contig_10:486888..489126+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4274 ID=mRNA_4274|Name=jgi.p|Trimin1|146954|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2239bp|location=Sequence derived from alignment at Contig_10:486888..489126+ (Tribonema minus UTEX_B_3156 )
TTGGTGGTGTCTCAGGAACCAGCACCAGTGACGCTGGAGAACGTGCAAGG
GTTTGTACGCAGGCTGTGCTGCAACCAGTACATCAAGCCGCGCGCCAAGG
CCCTGGACTGGATCAAGCAGGGCTTCAGCCGCCACAGTATGCACCTCCCA
ACACTGAACTCTTTCACGCGCCAGGAGCTGCGTGACATGTACAGCGGCAA
TGAGACTGTCAGCGAGGCCGACTTCATTGAGTGTCTCAGCTTCGAAGATG
CCGAAAACTTTCAGTGGGGCAGCGAAGAGATGACCGCAACAAGGGGCTAT
CTACTGCAGGTTTGTCAATCGTTGCGCAAAGGTAGCAGCTGTCGTCAATG
GTGTACTGTGTGTGGGAACACAATTACTGTCAACGCGGGTTGAGGTGTTG
GACAAGCACATTCGATGGTGTGTTATGAGGGTGGGAGTGTGGTTATTTGC
AGATGCCTGTGGTGGCAAAAATGTTTGCTTCGAAGAGCAGACCTGCTTTG
AATCAGAGAAGTTGAAGCTTTGTGGCAGTGCATGTGAGTGGTTGTAAGCA
GAACGAGCGGATGTCATGTCTGAAGGTTCTGATGGGCCATTTCTGTATAT
GTACAGATGGTGCACAGCACGCAGCTGGCACAAGGTTGGGTGGTGCAAGG
CATCCAGCAATATGTACGCAAATGTCCATCAAGCAACAACATACATAGAA
GTAATACGCAACGTGGTGCTTCAGTATTTACTTAATGTATATGGACTAGC
GGCCATTATACTGACAGGTTTTGCTACCAGTCAGTATGCCGACCATAACT
TTGACCAATCCCTATTCCGTCAACACATGCCCGTATTCCCATATATTTTG
CATACTATATACCCGCATGCTCGAGTTTTGGCCTGCAGACTCCGTATCAA
TCCGTGAAGAGGGGTGTCCAAGGTGTGTGGCCATTTGGTGCACGCTGCAG
TGTAAGTAATGTGCGGCTCACATGCGTCAACCCCTATTGCCATGATACAT
TGCAACTCTGCGTGTGTTTGAGCGGCGCAGGCAGTGAAGGATGAGGCGTT
CAGGAAGCGCCTGTTGCACTGGAGCACCGGCTACAACGCCATACCTTTCG
CCGCCACCAGGAAATTTGCCATCAAGGTGAGGCAAAACCTTGCCTTCACC
TCTGGCAATGGCGTTGTTGTAGTGCAAGCATTGGATACGCATGCAAGTCC
TCGAAAGGCAAGCCTTTGAAGTAGCGTGGTGCGCCTGCACTGGCCGCTCG
GTGACTGGAAGGACCCTGAGAGCACACGCTGGCCTCACTACACACAATGT
GTCTCGTCTATCCCATGGATCCATTAGGTTTGCCCACCAGAGTAAATTGC
AGTTTCAAAAGGGCGTACAGTCAGTTTGTTTGAATGTAGTAAGTTTCATG
TGTTTGTATACATACTGCGTGTAGCAGCAGCACGAAGTACAAAACTGAAG
ATAGCCTCCTATCAAACATGATTTATCGTCGCATGACAGTGGCAATCCCC
TGTAACCTGCAACACCTGTCACACTCAACTTGAATGACTCGTGCACGGCA
ATTGAGTAGCATCGCCCATTGCATAAAGCGTTTGATGCGATGTGGATATA
TGCTCCTGCACACACATCTACTGCATGACCTGTGATGTGGTACTTACAGT
GTTTTAATCATCGTGGTAAACGTAGTTTTGCACAAGGCTTGCGAAAGTGG
TTGAATTGCGTACTTGAAGGTGTATAGTGACATGTTATATAACATGCAGC
AGCACCAATCGCAAAGCCAGTGTAATGGTAGCTGAGCACAGAAGTGCATC
AGGAGCAGTCACTACCACCAGCAACTAGTGCAGGAGTGGGCAGTAGCAAC
TTTGCTCTGCTTCGCACACCGCGGACATTCGTTGTCGCGATGCGTTGTAG
ATCTTGTGTTGTGCACTTCAGAGTACTCAGTTAAATTTATGTCATTCACT
GGTACCTGGGCTCCAAGTCCTTGAGGACTACCAGTTCGTACGTAATTGTC
TTATTTGCTGTCTAGCATGTCTCTGATATCATATGTCATTTCCATTCTGG
TCACTGCCTCGCTGTCTTCAGGTGAAGCCTGGCATCAGCCTCAACGATAA
CACAGTGAGCATACTGCCTGACGGGCTGCCGGAGGCGTCCACGTGCATCA
ACGAGCTCCGCCTCCCCTGCTATTCGAGCCTGGCAAAGCTTCGAGAGCGC
ATGGACATGGCCATGGCAGTTCTCAGCTTCAATGAGCAG
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Coding sequence (CDS) from alignment at Contig_10:486888..489126+

>mRNA_4274 ID=mRNA_4274|Name=jgi.p|Trimin1|146954|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=573bp|location=Sequence derived from alignment at Contig_10:486888..489126+ (Tribonema minus UTEX_B_3156 )
TTGGTGGTGTCTCAGGAACCAGCACCAGTGACGCTGGAGAACGTGCAAGG
GTTTGTACGCAGGCTGTGCTGCAACCAGTACATCAAGCCGCGCGCCAAGG
CCCTGGACTGGATCAAGCAGGGCTTCAGCCGCCACAGTATGCACCTCCCA
ACACTGAACTCTTTCACGCGCCAGGAGCTGCGTGACATGTACAGCGGCAA
TGAGACTGTCAGCGAGGCCGACTTCATTGAGTGTCTCAGCTTCGAAGATG
CCGAAAACTTTCAGTGGGGCAGCGAAGAGATGACCGCAACAAGGGGCTAT
CTACTGCAGGCAGTGAAGGATGAGGCGTTCAGGAAGCGCCTGTTGCACTG
GAGCACCGGCTACAACGCCATACCTTTCGCCGCCACCAGGAAATTTGCCA
TCAAGGTGAAGCCTGGCATCAGCCTCAACGATAACACAGTGAGCATACTG
CCTGACGGGCTGCCGGAGGCGTCCACGTGCATCAACGAGCTCCGCCTCCC
CTGCTATTCGAGCCTGGCAAAGCTTCGAGAGCGCATGGACATGGCCATGG
CAGTTCTCAGCTTCAATGAGCAG
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