mRNA_4268 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|347295
Unique NamemRNA_4268
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|347295 vs. uniprot
Match: A0A835ZFG7_9STRA (Protein MAK16 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFG7_9STRA)

HSP 1 Score: 548 bits (1413), Expect = 1.980e-195
Identity = 330/330 (100.00%), Postives = 330/330 (100.00%), Query Frame = 1
Query:    1 MQCDEVIWSVINHQFCAFKAKIAKEQTFCRNPYNATGLCNRGSCPLANSRYATIKEHDGVCYLYMKSIERAHSPKNLWEKIKLPRNYTQALEIVSEQLQYFPKYLQHKNKQRLTKIHQYLIRMRKLKLKARPKLVAINKKVERREAKXXXXXEKAADLDRSIETELLERLKRGTYGDIYNFPEVQYGKALQQAEEEFSGEEEXXXXXXXXXXXXXXVEYVEGDEEEESDMEDGAWGSSYWGAEGGSDAGSDGETVDASDEEXXXXXXXXXXXXXXXXXXXXXXXKRVKGAAGAKKAVGGQGKKRPGPYVEVEYEEEMEGGATESSMSFNW 990
            MQCDEVIWSVINHQFCAFKAKIAKEQTFCRNPYNATGLCNRGSCPLANSRYATIKEHDGVCYLYMKSIERAHSPKNLWEKIKLPRNYTQALEIVSEQLQYFPKYLQHKNKQRLTKIHQYLIRMRKLKLKARPKLVAINKKVERREAKXXXXXEKAADLDRSIETELLERLKRGTYGDIYNFPEVQYGKALQQAEEEFSGEEEXXXXXXXXXXXXXXVEYVEGDEEEESDMEDGAWGSSYWGAEGGSDAGSDGETVDASDEEXXXXXXXXXXXXXXXXXXXXXXXKRVKGAAGAKKAVGGQGKKRPGPYVEVEYEEEMEGGATESSMSFNW
Sbjct:    1 MQCDEVIWSVINHQFCAFKAKIAKEQTFCRNPYNATGLCNRGSCPLANSRYATIKEHDGVCYLYMKSIERAHSPKNLWEKIKLPRNYTQALEIVSEQLQYFPKYLQHKNKQRLTKIHQYLIRMRKLKLKARPKLVAINKKVERREAKXXXXXEKAADLDRSIETELLERLKRGTYGDIYNFPEVQYGKALQQAEEEFSGEEEXXXXXXXXXXXXXXVEYVEGDEEEESDMEDGAWGSSYWGAEGGSDAGSDGETVDASDEEXXXXXXXXXXXXXXXXXXXXXXXKRVKGAAGAKKAVGGQGKKRPGPYVEVEYEEEMEGGATESSMSFNW 330          
BLAST of jgi.p|Trimin1|347295 vs. uniprot
Match: D8LE67_ECTSI (Protein MAK16 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE67_ECTSI)

HSP 1 Score: 310 bits (793), Expect = 5.630e-101
Identity = 169/245 (68.98%), Postives = 196/245 (80.00%), Query Frame = 1
Query:    1 MQCDEVIWSVINHQFCAFKAKIAKEQTFCRNPYNATGLCNRGSCPLANSRYATIKEHDGVCYLYMKSIERAHSPKNLWEKIKLPRNYTQALEIVSEQLQYFPKYLQHKNKQRLTKIHQYLIRMRKLKLKARPKLVAINKKVERREAKXXXXXEKAADLDRSIETELLERLKRGTYGDIYNFPEVQYGKALQQAEEEFSGEEEXXXXXXXXXXXXXXVEYVEGDEEEESDMEDGA-WGSSYWGAEG 732
            MQ D+VIW V+N+QFC+FK+KIAKEQTFCRN YN TGLCN+ SCPLANSRYATI+EHDGVCYLY+K+IERAH+PKNLWEKIKL RNY +ALE VS +L++FPK+LQH++KQRLTKIHQYLIRMRKLKLKA+PKLV IN KVE+RE         AA L+RSIE ELLERLK+GTYGDIYNFPEVQY KAL +AE+E++ E+        XXXXXXX            D+ED A WG SYWGA G
Sbjct:    1 MQSDDVIWQVVNYQFCSFKSKIAKEQTFCRNEYNVTGLCNKSSCPLANSRYATIREHDGVCYLYIKTIERAHTPKNLWEKIKLSRNYGKALERVSRELEFFPKHLQHRSKQRLTKIHQYLIRMRKLKLKAKPKLVTINPKVEKREKMREKKALVAAKLERSIEGELLERLKKGTYGDIYNFPEVQYDKALMEAEDEYA-EQNPEAMEEEXXXXXXXXXXXXXXXXXXXDIEDTAEWGGSYWGAPG 244          
BLAST of jgi.p|Trimin1|347295 vs. uniprot
Match: A0A067C7V2_SAPPC (Protein MAK16 homolog n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C7V2_SAPPC)

HSP 1 Score: 278 bits (711), Expect = 2.690e-89
Identity = 150/234 (64.10%), Postives = 180/234 (76.92%), Query Frame = 1
Query:    1 MQCDEVIWSVINHQFCAFKAKIAKEQTFCRNPYNATGLCNRGSCPLANSRYATIKEHDGVCYLYMKSIERAHSPKNLWEKIKLPRNYTQALEIVSEQLQYFPKYLQHKNKQRLTKIHQYLIRMRKLKLKARPKLVAINKKVERREAKXXXXXEKAADLDRSIETELLERLKRGTYGDIYNFPEVQYGKALQQAEEEFS-GEEEXXXXXXXXXXXXXXVEYVEG-DEEEESDMED 696
            MQ DEVIW VI++QFC+FK+K+ +   FCRN YN TGLCNR SCPLANSRYATI+EH+GVCYLYMK+IERAHSPKNLWEK+KL +NYT++LE +  Q+Q++PK L H+NKQRLTKIHQYL+RMRKL+LK +P LV INKK+ERREA+     + AA LD SIE ELL+RL++GTYGDIYNFPE ++ K L   EEE   GE+E      XXX     VEYVE      E DMED
Sbjct:    1 MQHDEVIWGVISNQFCSFKSKLREGAMFCRNEYNVTGLCNRQSCPLANSRYATIREHNGVCYLYMKTIERAHSPKNLWEKVKLSKNYTKSLEQIDAQMQFWPKKLIHRNKQRLTKIHQYLMRMRKLRLKTKPNLVVINKKIERREARREEKAKTAAKLDSSIEKELLQRLQKGTYGDIYNFPEREFAKVLDDNEEEXXXGEDEYEMESDXXXGQ---VEYVEDFXXXSEDDMED 231          
BLAST of jgi.p|Trimin1|347295 vs. uniprot
Match: A0A3F2RF83_9STRA (Protein MAK16 homolog n=6 Tax=Phytophthora TaxID=4783 RepID=A0A3F2RF83_9STRA)

HSP 1 Score: 272 bits (696), Expect = 8.590e-87
Identity = 159/243 (65.43%), Postives = 188/243 (77.37%), Query Frame = 1
Query:    1 MQCDEVIWSVINHQFCAFKAKI-AKEQTFCRNPYNATGLCNRGSCPLANSRYATIKEHDGVCYLYMKSIERAHSPKNLWEKIKLPRNYTQALEIVSEQLQYFPKYLQHKNKQRLTKIHQYLIRMRKLKLKARPKLVAINKKVERREAKXXXXXEKAADLDRSIETELLERLKRGTYGDIYNFPEVQYGKALQQAEEEFSGEEEXXXXXXXXXXXXXX----------VEYVEGDEEEESDMED 696
            MQ DEVIW VI+ QFC+FK+K+      FC NPYN TGLCNR +CPLANSRYATI+EHDGVCYLYMK+IERAH+P  LWE++KL +NYT++L  + EQLQ++PK L HKNKQRLTKIHQYL+RMRKL LK +PKLV INKK+ERRE +       AA LD SIE ELLERL++GTYGDIYNFPE ++ K L+   +  + EEEXXXXXXXXXXXXXX          VEYVE  EE+ESD+ED
Sbjct:    1 MQHDEVIWGVISKQFCSFKSKLPGTGNMFCSNPYNVTGLCNRSACPLANSRYATIREHDGVCYLYMKTIERAHTPNRLWERVKLSKNYTKSLAQIDEQLQFWPKKLIHKNKQRLTKIHQYLMRMRKLTLKTKPKLVVINKKIERREKRREKKAMVAAKLDNSIEKELLERLQKGTYGDIYNFPESEFSKVLESNGKRQTMEEEXXXXXXXXXXXXXXXXXXXXDAGQVEYVEDFEEDESDLED 243          
BLAST of jgi.p|Trimin1|347295 vs. uniprot
Match: A0A1V9YTR0_9STRA (Protein MAK16 homolog n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YTR0_9STRA)

HSP 1 Score: 271 bits (694), Expect = 1.420e-86
Identity = 131/194 (67.53%), Postives = 161/194 (82.99%), Query Frame = 1
Query:    1 MQCDEVIWSVINHQFCAFKAKIAKEQTFCRNPYNATGLCNRGSCPLANSRYATIKEHDGVCYLYMKSIERAHSPKNLWEKIKLPRNYTQALEIVSEQLQYFPKYLQHKNKQRLTKIHQYLIRMRKLKLKARPKLVAINKKVERREAKXXXXXEKAADLDRSIETELLERLKRGTYGDIYNFPEVQYGKALQQAE 582
            MQ DEVIW VI++QFC+FK+K+ +   FCRN YN TGLCNR SCPLANSRYATI+EH+GVCYLYMK+IERAHSPKNLWEK+KL +NYT++L  + EQ+Q++PK + H+NKQRLTKIHQYL+RMRKL+LK +P LV INKK+ERREA+     + AA LD SIE ELL RL++GTYGDIYNFPE ++ K L + E
Sbjct:    1 MQHDEVIWGVISNQFCSFKSKLREGAMFCRNEYNVTGLCNRQSCPLANSRYATIREHNGVCYLYMKTIERAHSPKNLWEKVKLSKNYTKSLAQIDEQMQFWPKKMIHRNKQRLTKIHQYLMRMRKLRLKTKPNLVVINKKIERREARREEKAKTAAKLDSSIEKELLARLQKGTYGDIYNFPEKEFVKVLDENE 194          
BLAST of jgi.p|Trimin1|347295 vs. uniprot
Match: A0A024GAA3_9STRA (Protein MAK16 homolog n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GAA3_9STRA)

HSP 1 Score: 267 bits (683), Expect = 5.730e-85
Identity = 160/324 (49.38%), Postives = 205/324 (63.27%), Query Frame = 1
Query:    1 MQCDEVIWSVINHQFCAFKAKI-AKEQTFCRNPYNATGLCNRGSCPLANSRYATIKEHDGVCYLYMKSIERAHSPKNLWEKIKLPRNYTQALEIVSEQLQYFPKYLQHKNKQRLTKIHQYLIRMRKLKLKARPKLVAINKKVERREAKXXXXXEKAADLDRSIETELLERLKRGTYGDIYNFPEVQYG-----KALQQAEEEFSGEEEXXXXXXXXXXXXXXVEYVEGDEEEESDMEDGAWGSSYWGAEGGSDAGSDGETVDASDEEXXXXXXXXXXXXXXXXXXXXXXXKRVKGAAGAKKAVGGQGKKRPGPYVEVEYEEEME 954
            MQ DEVIW VI+ QFC+FK+++ A +  FCRN YN +GLCNRG+CPLANSRYAT++EH+G+CYLYMK+IERAHSPK+LWE+IKL RNY+++LE + +QLQ++PK + HK KQR TKIHQYL+RMRKL+ + +PKLV INKK+ERRE +     + AA +D +IE ELLERL++GTYGDIYNFPE ++      K + Q EEE   EEE               EYVE        MED          E G+ + SD  T    D E                       +R +   GA K V  + +K PGPYVE+EYE+E E
Sbjct:    1 MQHDEVIWGVISGQFCSFKSRLPATKALFCRNEYNVSGLCNRGACPLANSRYATVREHEGICYLYMKTIERAHSPKHLWERIKLSRNYSRSLEQIDQQLQFWPKKMIHKVKQRQTKIHQYLLRMRKLQSQIKPKLVVINKKIERREIRRERKAQTAAKIDTAIEKELLERLEKGTYGDIYNFPEKEFSSIINQKGIAQTEEENQVEEEVEYSSEEDAV----TEYVEDFXXXXXXMED---------FESGAISASDQSTSSDDDNEGNDAHV-----------------RRKRSLNGASK-VNKKLRKAPGPYVEIEYEQENE 293          
BLAST of jgi.p|Trimin1|347295 vs. uniprot
Match: A0A4D9D3B1_9STRA (Protein MAK16 homolog n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D3B1_9STRA)

HSP 1 Score: 268 bits (684), Expect = 9.530e-85
Identity = 133/191 (69.63%), Postives = 158/191 (82.72%), Query Frame = 1
Query:   10 DEVIWSVINHQFCAFKAKI-AKEQTFCRNPYNATGLCNRGSCPLANSRYATIKEHDGVCYLYMKSIERAHSPKNLWEKIKLPRNYTQALEIVSEQLQYFPKYLQHKNKQRLTKIHQYLIRMRKLKLKA-RPKLVAINKKVERREAKXXXXXEKAADLDRSIETELLERLKRGTYGDIYNFPEVQYGKALQQ 576
            DE+IW +INHQFC+FK+K+ AKE TFCRNPYN TGLC R +CPLANSRYATI+E +G CYL +K+ ERAH+P  LWEKI+LP NY +ALE VSE+L+YFPKYLQH+NKQRLTKIHQYLIRMRKLKLKA +PKLV I+KKV+RRE K       AA L+++IE ELL RL++GTYGDIYNFPE  Y K L +
Sbjct:    5 DEIIWQIINHQFCSFKSKLNAKEHTFCRNPYNVTGLCLRSACPLANSRYATIREEEGHCYLLLKTAERAHTPAKLWEKIRLPSNYAKALEKVSEELEYFPKYLQHRNKQRLTKIHQYLIRMRKLKLKANKPKLVGIHKKVDRREKKREAKALAAAKLEQNIEKELLARLRQGTYGDIYNFPETTYHKVLDE 195          
BLAST of jgi.p|Trimin1|347295 vs. uniprot
Match: A0A484EAC2_BRELC (Protein MAK16 homolog n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EAC2_BRELC)

HSP 1 Score: 265 bits (678), Expect = 3.950e-84
Identity = 181/342 (52.92%), Postives = 218/342 (63.74%), Query Frame = 1
Query:    1 MQCDEVIWSVINHQFCAFKAKI-AKEQTFCRNPYNATGLCNRGSCPLANSRYATIKEHDGVCYLYMKSIERAHSPKNLWEKIKLPRNYTQALEIVSEQLQYFPKYLQHKNKQRLTKIHQYLIRMRKLKLKARPKLVAINKKVERREAKXXXXXEKAADLDRSIETELLERLKRGTYGDIYNFPEVQYGKAL------QQAEEEFSGEEEXXXXXXXXXXXXXXV----EYVEGDEEEESDMEDGAWGSSYWGAEGGSDAGSDGETVDASDEEXXXXXXXXXXXXXXXXXXXXXXXKRVKGAAGAKKAVGGQGKKRP-GPYVEVEYEEEMEGGATESSMSFNW 990
            MQ DEVIW VI+ QFC+FK+K+      FC NPYN TGLC+R +CPLANSRYATI+E DGVCYLYMK+IERAH+P  LWE++KL RNYT++L  + EQLQ++PK L +KNKQRLTKIHQYL+RMRKL LK +PKLV INKK++RRE +       AA LD SIE ELLERL++GTYGDIYNFPE ++ K L      Q  EEE  GEEE   XXXXXXXXXXXV    EYVE      SD+ED A   +       +++GS  E VD                            K+ +  A  KK    Q  KRP GPYVE+EYE+E E     ++   NW
Sbjct:    1 MQHDEVIWGVISKQFCSFKSKLPGTGAMFCSNPYNVTGLCHRSACPLANSRYATIREEDGVCYLYMKTIERAHTPNRLWERVKLSRNYTKSLAQIDEQLQFWPKKLIYKNKQRLTKIHQYLMRMRKLTLKTKPKLVVINKKIDRREKRREKKAMVAAKLDNSIEKELLERLQKGTYGDIYNFPEREFSKVLADKGKRQTMEEESEGEEEIEYXXXXXXXXXXXVSGQVEYVEDFXXXXSDLEDFADNFAVDDEGDSNESGS--EDVDVP------------------------HVKKRQAPALPKKPSKKQ--KRPKGPYVEIEYEQEQE-----TTNGLNW 309          
BLAST of jgi.p|Trimin1|347295 vs. uniprot
Match: W7TVF8_9STRA (Protein MAK16 homolog n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TVF8_9STRA)

HSP 1 Score: 266 bits (679), Expect = 4.630e-84
Identity = 133/191 (69.63%), Postives = 157/191 (82.20%), Query Frame = 1
Query:   10 DEVIWSVINHQFCAFKAKI-AKEQTFCRNPYNATGLCNRGSCPLANSRYATIKEHDGVCYLYMKSIERAHSPKNLWEKIKLPRNYTQALEIVSEQLQYFPKYLQHKNKQRLTKIHQYLIRMRKLKLKA-RPKLVAINKKVERREAKXXXXXEKAADLDRSIETELLERLKRGTYGDIYNFPEVQYGKALQQ 576
            DE+IW +INHQFC+FK+KI AKE TFCRNPYN TGLC R +CPLANSRYATI+E +G CYL +K+ ERAH+P  LWEKI+LP NY +ALE VSE L+YFPKYLQH+NKQRLTKIHQYLIRMR+LKLKA +PKLV I+KKV+RRE K       AA L+++IE ELL RL++GTYGDIYNFPE  Y K L +
Sbjct:    5 DEIIWQIINHQFCSFKSKINAKEHTFCRNPYNVTGLCLRSACPLANSRYATIREEEGHCYLLLKTAERAHTPAKLWEKIRLPSNYAKALEKVSEALEYFPKYLQHRNKQRLTKIHQYLIRMRELKLKANKPKLVGIHKKVDRREKKREAKALAAAKLEQNIEKELLARLRQGTYGDIYNFPETTYHKVLDE 195          
BLAST of jgi.p|Trimin1|347295 vs. uniprot
Match: A0A6G0WCX5_9STRA (Protein MAK16 homolog n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WCX5_9STRA)

HSP 1 Score: 263 bits (672), Expect = 1.100e-83
Identity = 131/194 (67.53%), Postives = 162/194 (83.51%), Query Frame = 1
Query:    1 MQCDEVIWSVINHQFCAFKAKIAKEQTFCRNPYNATGLCNRGSCPLANSRYATIKEHDGVCYLYMKSIERAHSPKNLWEKIKLPRNYTQALEIVSEQLQYFPKYLQHKNKQRLTKIHQYLIRMRKLKLKARPKLVAINKKVERREAKXXXXXEKAADLDRSIETELLERLKRGTYGDIYNFPEVQYGKALQQAE 582
            MQ DEVIW VIN+QFC+FK+K+ +   FCRN YN TGLCNR SCPLANSRYATI+EH+GVCYLYMK+IERAHSPKNLWEKIKL +NYT++L  + E +Q++PK + H+NKQRLTKIHQYL+RMRKL++K +P LV ++KK+ERREA+XXXXX      + SIE ELLERL++GTYGDIYNFPE ++ K L + E
Sbjct:    1 MQHDEVIWGVINNQFCSFKSKLREGSAFCRNEYNVTGLCNRQSCPLANSRYATIREHEGVCYLYMKTIERAHSPKNLWEKIKLSKNYTKSLGQIDEHMQFWPKKMIHRNKQRLTKIHQYLMRMRKLRVKTKPNLVVVSKKIERREARXXXXXXXXXXXESSIEKELLERLQKGTYGDIYNFPEREFTKLLDEHE 194          
BLAST of jgi.p|Trimin1|347295 vs. uniprot
Match: A0A835YL75_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL75_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 3.600e-22
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 1
Query:    1 MSGLGQRTGVAWLAADARTPVGATAASGHWYMGIYGLACCAAVT 132
            MSGLGQRTGVAWLAADARTPVGATAASGHWYMGIYGLACCAAVT
Sbjct:    1 MSGLGQRTGVAWLAADARTPVGATAASGHWYMGIYGLACCAAVT 44          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347295 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZFG7_9STRA1.980e-195100.00Protein MAK16 homolog n=1 Tax=Tribonema minus TaxI... [more]
D8LE67_ECTSI5.630e-10168.98Protein MAK16 homolog n=2 Tax=Ectocarpus TaxID=287... [more]
A0A067C7V2_SAPPC2.690e-8964.10Protein MAK16 homolog n=4 Tax=Saprolegniaceae TaxI... [more]
A0A3F2RF83_9STRA8.590e-8765.43Protein MAK16 homolog n=6 Tax=Phytophthora TaxID=4... [more]
A0A1V9YTR0_9STRA1.420e-8667.53Protein MAK16 homolog n=1 Tax=Thraustotheca clavat... [more]
A0A024GAA3_9STRA5.730e-8549.38Protein MAK16 homolog n=1 Tax=Albugo candida TaxID... [more]
A0A4D9D3B1_9STRA9.530e-8569.63Protein MAK16 homolog n=1 Tax=Nannochloropsis sali... [more]
A0A484EAC2_BRELC3.950e-8452.92Protein MAK16 homolog n=1 Tax=Bremia lactucae TaxI... [more]
W7TVF8_9STRA4.630e-8469.63Protein MAK16 homolog n=1 Tax=Nannochloropsis gadi... [more]
A0A6G0WCX5_9STRA1.100e-8367.53Protein MAK16 homolog n=1 Tax=Aphanomyces euteiche... [more]

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BLAST of jgi.p|Trimin1|347295 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YL75_9STRA3.600e-22100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_10contigContig_10:424052..427115 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|347295|estExt_Genemark1.C_Ctg_100054
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko04131
KEGG rclassRC00020,RC02814,RC02821
KEGG ReactionR00897,R03601,R04859
KEGG ModuleM00021
KEGG Pathwayko00270,ko00920,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00270,map00920,map01100,map01110,map01120,map01130,map01200,map01230
KEGG koko:K01738,ko:K14831,ko:K19984
EC2.5.1.47
GOsGO:0000460,GO:0000463,GO:0000466,GO:0000470,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042273,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:1901360,GO:1990904
Preferred nameMAK16
Descriptionmaturation of LSU-rRNA
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5129@1|root,KOG3064@2759|Eukaryota
Evalue9.22e-102
Seed ortholog2880.D8LE67
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMak16 protein
Ec32 orthologEc-00_001130.1
TranscriptId347617
TrackFilteredModels1
ProteinId347295
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347295gene_4268Tribonema minus UTEX_B_3156 geneContig_10 424052..427115 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347295Trimin1|347295|estExt_Genemark1.C_Ctg_100054Tribonema minus UTEX_B_3156 polypeptideContig_10 424052..427115 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4268_2exon_4268_2Tribonema minus UTEX_B_3156 exonContig_10 424052..424495 -
exon_4268_1exon_4268_1Tribonema minus UTEX_B_3156 exonContig_10 426567..427115 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4268CDS_4268Tribonema minus UTEX_B_3156 CDSContig_10 426567..427115 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4268 ID=mRNA_4268|Name=jgi.p|Trimin1|347295|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=993bp|location=Sequence derived from alignment at Contig_10:424052..427115- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGTGCGATGAGGTAATATGGAGCGTCATCAACCACCAGTTTTGCGC
CTTCAAGGCCAAAATCGCCAAGGAGCAGACTTTCTGCCGCAATCCCTACA
ATGCAACGGGGCTGTGCAATAGAGGATCCTGCCCTCTCGCCAACAGCCGA
TACGCGACCATCAAGGAGCACGACGGCGTCTGCTACCTGTACATGAAGAG
CATTGAACGAGCGCACTCCCCGAAAAACCTATGGGAGAAGATTAAGCTCC
CTCGCAATTATACCCAGGCACTGGAGATTGTCTCCGAGCAGCTGCAATAC
TTTCCCAAGTACCTGCAGCACAAGAACAAGCAGAGGCTTACCAAGATACA
CCAGTACCTCATCCGCATGCGCAAGCTGAAGCTTAAAGCGAGGCCTAAGC
TGGTGGCGATCAACAAAAAGGTGGAGAGGCGGGAAGCCAAGAGGGAGGCA
AAGGCGGAGAAAGCAGCTGACCTGGATAGGAGCATCGAGACCGAGCTGCT
GGAGCGGCTCAAACGGGGAACCTATGGCGATATATATAACTTCCCAGAGG
TCCAGTACGGCAAGGCGCTGCAGCAAGCGGAGGAAGAGTTCTCCGGTGAG
GAGGAAGCGGAGTCCGAAGTTGAAGATGAGCCGGAGACGGAAGGTGAAGT
TGAGTACGTGGAGGGTGACGAAGAGGAGGAGAGCGACATGGAGGACGGTG
CCTGGGGGTCCTCTTACTGGGGGGCAGAAGGGGGGTCTGACGCCGGTTCG
GACGGCGAAACTGTCGACGCCAGTGATGAGGAAGGTAGCGAGGCGGGCGG
CGAGAAACCGAAGGCCAAGCGGAAAGCGGAAGGGGGCGATGAGAAGGGGG
GGAAACGCGTCAAGGGGGCGGCGGGTGCGAAGAAGGCGGTCGGTGGCCAG
GGGAAGAAGCGGCCCGGGCCGTATGTTGAAGTTGAATATGAGGAGGAGAT
GGAGGGGGGCGCTACGGAGAGCAGTATGAGCTTCAACTGGTGA
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protein sequence of jgi.p|Trimin1|347295

>Trimin1|347295|estExt_Genemark1.C_Ctg_100054 ID=Trimin1|347295|estExt_Genemark1.C_Ctg_100054|Name=jgi.p|Trimin1|347295|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=331bp
MQCDEVIWSVINHQFCAFKAKIAKEQTFCRNPYNATGLCNRGSCPLANSR
YATIKEHDGVCYLYMKSIERAHSPKNLWEKIKLPRNYTQALEIVSEQLQY
FPKYLQHKNKQRLTKIHQYLIRMRKLKLKARPKLVAINKKVERREAKREA
KAEKAADLDRSIETELLERLKRGTYGDIYNFPEVQYGKALQQAEEEFSGE
EEAESEVEDEPETEGEVEYVEGDEEEESDMEDGAWGSSYWGAEGGSDAGS
DGETVDASDEEGSEAGGEKPKAKRKAEGGDEKGGKRVKGAAGAKKAVGGQ
GKKRPGPYVEVEYEEEMEGGATESSMSFNW*
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mRNA from alignment at Contig_10:424052..427115-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4268 ID=mRNA_4268|Name=jgi.p|Trimin1|347295|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3064bp|location=Sequence derived from alignment at Contig_10:424052..427115- (Tribonema minus UTEX_B_3156 )
ATGCAGTGCGATGAGGTAATATGGAGCGTCATCAACCACCAGTTTTGCGC CTTCAAGGCCAAAATCGCCAAGGAGCAGACTTTCTGCCGCAATCCCTACA ATGCAACGGGGCTGTGCAATAGAGGATCCTGCCCTCTCGCCAACAGCCGA TACGCGACCATCAAGGAGCACGACGGCGTCTGCTACCTGTACATGAAGAG CATTGAACGAGCGCACTCCCCGAAAAACCTATGGGAGAAGATTAAGCTCC CTCGCAATTATACCCAGGCACTGGAGATTGTCTCCGAGCAGCTGCAATAC TTTCCCAAGTACCTGCAGCACAAGAACAAGCAGAGGCTTACCAAGATACA CCAGTACCTCATCCGCATGCGCAAGCTGAAGCTTAAAGCGAGGCCTAAGC TGGTGGCGATCAACAAAAAGGTGGAGAGGCGGGAAGCCAAGAGGGAGGCA AAGGCGGAGAAAGCAGCTGACCTGGATAGGAGCATCGAGACCGAGCTGCT GGAGCGGCTCAAACGGGGAACCTATGGCGATATATATAACTTCCCAGAGG TGCGTGTTTCAACATGTCGTTGTACCTACTGCGAGTCAGCAACGGCAGCA GACTGCTTCACATATTGCAGATCATGTTTCCTGAAGCGTGGAAAGCACCT GCAGGCAACTACATGTAAGGAAACAACCACTTAGCATCATGTCAAAGAGC GCACCCAACGAAATTGGTTCGCGGTCCAGAAGCTGGGTGCTAAACACCGG CAGTTGTGAGGACTGTGATATTGAACGGGTTTTATGATTCAGGATTGACA TGAACTTTGGGCAGAGTTGTAGTTGATGATGCCACCTGCGGCCTCCAAGC ACGCACGTGTACTGTACCTGGATCGAGACTGCACTTTGGGGGGCTTCATG TTCTGTGGAGCCCCCTCGAGAGTCTGTCAGCTGACCATAACGTAATTAAA AACCTTCGTACTTTAATTCGAACTTTGAAGATGGTGCTCACGTGGATCTT CCTAGCATGTAGAGTGCGGTAACGAATTATACAACAACGCGTTGTTTTCA TTAGTTTTAGCTGTTCGTTATATAGCGAATAACTAACGAGAGCGCTCGAC GCGAATTCGTTGTTTCACATTTTTGTGTGAATGCTCTGCAGCTCATTTGC ACTAGCTCTGCTGCACCGTGTGACAACGATGGCGGCACGTATGAGATGAA ATGCGCTGGTGTGCCGAACAGCGTACCGCCACCGCTGCCTAACCCTTTCA CGAGTTGTGCTATGCATGCTTGCACAAGGCATGGCTAACAGCACGAAGAC AAGATCTGAACGGGGCACGAAAGCCGAGTGTTTGCACGGAGGCACACGTC GAGTGCTGGCTTGCATTCAAGTGCTTGCTTTCATAGTAGTCGGTCGCCCA CTCTGAGCTCCTCAGCTTGACACACACACACTGCACACCAATGTTTCCAA GTTCAAGTTCCGGTTGAAGTTCAACATTAAGTTGTTTTAACTGTTTTGTG TGACCTCTTTGGGGCATGCAGCTCCAGGCATTGTAGCAACTGCTTGAGAG CCAGAGCAACTCGAAACAGGGCGACTGAGATGCTTGCAAGTCCGAGAGCT CCTCTCGAACGCTACTAATCCCAGGATGGTAGGGATTACTGGTAGAATAC AGCAGCAACAATAAAATAACGAATACATTTTAAATAGCGAATAACTAACG AATAACTAACGAATGGTTGAGCAACAATACCGAATGACTAACTATAGCAA TAGTTGTCGCACTCTACTAGTATGGCTGTTGCCTGATGGCACATGTGTTG CGTGAGGATGCACTTCAAGCGTTTGACAGCTCACCGCAAGTTCTCCACAA AGAAAGCAGAAGTGAGTCACTGGGAAGTGTGGTTCGTGCATGCTAGGCTG CTGCTGAGCACGGTGTGGCTCACGTTTGCTACTTGCGCTAAAGATGTGAG AATACGTGTGTAGCGTCGAAAAGTGCTTCGGCGCTTGAACTTGCCTGCCG CGCACGTCTCTCTATCTACCTACCTATGTGCCTCATGAAGAACAGCAAAG CAGACGCTGGCTGCTGCATGGTCAAAAATGCACTGCCGTCAACTGGTGAC CTAGCTGTGATTGATTTCAAGAGTATATGCCAGATGCGCTCCCATGGCAA TTGCAGCTTGAGACTGGGGACAGCTTGCGGTGTGATGAGTCATTGCTGTT GGACGGTGTCATGCTGATGTGGGCCAGTGCTGATGTGCGGTGATGCTCAG CGCGGTTACGAATTCGTTGCAAACAGACCGCCACTACACTGCAGTGACTC GAGAATGGCAGGACGATTGCGTGTGGAGGTGCTCATGTGACTATGCATGC GCGTTTGTGTGCATTGCAGGTGCGCCGCGACTTGGTCACGTTGCCACCGC CGCTGGCCTGCGCTCTGCTGAAATGACACATGATGTTACCCGTTGTCGTC ACCTTGTGATCATCGTTACTCTTACAACTTCTCTGAGGTTTGCTGTATAT GGTGTTACCCGTTTTTCTCACCTTGTGATCAACGCTACTCTCATACTTCG AAGTACATACATCGAAGTCTGCGGTACATATTCTCAGCTCTTTCCGCCCC ATCGTCTGTTCTCAATGCAGGTCCAGTACGGCAAGGCGCTGCAGCAAGCG GAGGAAGAGTTCTCCGGTGAGGAGGAAGCGGAGTCCGAAGTTGAAGATGA GCCGGAGACGGAAGGTGAAGTTGAGTACGTGGAGGGTGACGAAGAGGAGG AGAGCGACATGGAGGACGGTGCCTGGGGGTCCTCTTACTGGGGGGCAGAA GGGGGGTCTGACGCCGGTTCGGACGGCGAAACTGTCGACGCCAGTGATGA GGAAGGTAGCGAGGCGGGCGGCGAGAAACCGAAGGCCAAGCGGAAAGCGG AAGGGGGCGATGAGAAGGGGGGGAAACGCGTCAAGGGGGCGGCGGGTGCG AAGAAGGCGGTCGGTGGCCAGGGGAAGAAGCGGCCCGGGCCGTATGTTGA AGTTGAATATGAGGAGGAGATGGAGGGGGGCGCTACGGAGAGCAGTATGA GCTTCAACTGGTGA
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Coding sequence (CDS) from alignment at Contig_10:424052..427115-

>mRNA_4268 ID=mRNA_4268|Name=jgi.p|Trimin1|347295|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=993bp|location=Sequence derived from alignment at Contig_10:424052..427115- (Tribonema minus UTEX_B_3156 )
ATGCAGTGCGATGAGGTAATATGGAGCGTCATCAACCACCAGTTTTGCGC
CTTCAAGGCCAAAATCGCCAAGGAGCAGACTTTCTGCCGCAATCCCTACA
ATGCAACGGGGCTGTGCAATAGAGGATCCTGCCCTCTCGCCAACAGCCGA
TACGCGACCATCAAGGAGCACGACGGCGTCTGCTACCTGTACATGAAGAG
CATTGAACGAGCGCACTCCCCGAAAAACCTATGGGAGAAGATTAAGCTCC
CTCGCAATTATACCCAGGCACTGGAGATTGTCTCCGAGCAGCTGCAATAC
TTTCCCAAGTACCTGCAGCACAAGAACAAGCAGAGGCTTACCAAGATACA
CCAGTACCTCATCCGCATGCGCAAGCTGAAGCTTAAAGCGAGGCCTAAGC
TGGTGGCGATCAACAAAAAGGTGGAGAGGCGGGAAGCCAAGAGGGAGGCA
AAGGCGGAGAAAGCAGCTGACCTGGATAGGAGCATCGAGACCGAGCTGCT
GGAGCGGCTCAAACGGGGAACCTATGGCGATATATATAACTTCCCAGAGG
TCCAGTACGGCAAGGCGCTGCAGCAAGCGGAGGAAGAGTTCTCCGGTGAG
GAGGAAGCGGAGTCCGAAGTTGAAGATGAGCCGGAGACGGAAGGTGAAGT
TGAGTACGTGGAGGGTGACGAAGAGGAGGAGAGCGACATGGAGGACGGTG
CCTGGGGGTCCTCTTACTGGGGGGCAGAAGGGGGGTCTGACGCCGGTTCG
GACGGCGAAACTGTCGACGCCAGTGATGAGGAAGGTAGCGAGGCGGGCGG
CGAGAAACCGAAGGCCAAGCGGAAAGCGGAAGGGGGCGATGAGAAGGGGG
GGAAACGCGTCAAGGGGGCGGCGGGTGCGAAGAAGGCGGTCGGTGGCCAG
GGGAAGAAGCGGCCCGGGCCGTATGTTGAAGTTGAATATGAGGAGGAGAT
GGAGGGGGGCGCTACGGAGAGCAGTATGAGCTTCAACTGGTGA
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