mRNA_4263 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|159682
Unique NamemRNA_4263
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|159682 vs. uniprot
Match: A0A836CN73_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN73_9STRA)

HSP 1 Score: 487 bits (1253), Expect = 8.800e-174
Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 1
Query:    1 MHSPNASGTAAAATAAPLTVTQCACSLAPLHHCLSLFAAVKGYYDQTWQQRAAPSGTNLGVAFGGWADVDQALADAQQVYNNLVGSKYLDIGGGDSNGRWTSNSITKLNNGLGKIKSAGYVGVCYDIEEGDAGLSTAFANSFAKAKAAGLKVLVTISHSQPYGFSDAATIMNTMFASASVDYVSPQLYTSGGETANDWTVDGGAIGWRSYASSKGKIVPSVVKASMYANAQSTFQSYGVTTAGYITWA 744
            MHSPNASGTAAAATAAPLTVTQCACSLAPLHHCLSLFAAVKGYYDQTWQQRAAPSGTNLGVAFGGWADVDQALADAQQVYNNLVGSKYLDIGGGDSNGRWTSNSITKLNNGLGKIKSAGYVGVCYDIEEGDAGLSTAFANSFAKAKAAGLKVLVTISHSQPYGFSDAATIMNTMFASASVDYVSPQLYTSGGETANDWTVDGGAIGWRSYASSKGKIVPSVVKASMYANAQSTFQSYGVTTAGYITWA
Sbjct:    1 MHSPNASGTAAAATAAPLTVTQCACSLAPLHHCLSLFAAVKGYYDQTWQQRAAPSGTNLGVAFGGWADVDQALADAQQVYNNLVGSKYLDIGGGDSNGRWTSNSITKLNNGLGKIKSAGYVGVCYDIEEGDAGLSTAFANSFAKAKAAGLKVLVTISHSQPYGFSDAATIMNTMFASASVDYVSPQLYTSGGETANDWTVDGGAIGWRSYASSKGKIVPSVVKASMYANAQSTFQSYGVTTAGYITWA 248          
BLAST of jgi.p|Trimin1|159682 vs. uniprot
Match: A0A835YVP6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVP6_9STRA)

HSP 1 Score: 268 bits (686), Expect = 4.480e-88
Identity = 133/208 (63.94%), Postives = 162/208 (77.88%), Query Frame = 1
Query:  124 GYYDQTWQQ-RAAPSGTNLGVAFGGWADVDQALADAQQVYNNLVGSKYLDIGGGDSNGRWTSNSITKLNNGLGKIKSAGYVGVCYDIEEGDAGLSTAFANSFAKAKAAGLKVLVTISHSQPYGFSDAATIMNTMFASASVDYVSPQLYTSGGETANDWTVDGGAIGWRSYASSKGKIVPSVVKASMYANAQSTFQSYGVTTAGYITWA 744
            GYY QTW   R AP+GT LGVAFGGWADV  AL+DA   ++ L G+KYLD+GGG+ +G WT+  ITKL+  L  +K+AGYVG+CYDIEEG  GL+ AFA SFA AKAAGLKVLVTISHS PYGF DAA +M+ +FASASVDY+SPQLYT+G ETANDW   GG + W SYA    ++VPSV +A +YA+AQ+TF +YGVTT GY+ W+
Sbjct:    1 GYYHQTWDAARTAPAGTTLGVAFGGWADVTLALSDATNTFSKLGGAKYLDVGGGNGSGAWTAALITKLDANLAVVKNAGYVGICYDIEEGVTGLAPAFAASFANAKAAGLKVLVTISHSAPYGFPDAAAVMSAVFASASVDYLSPQLYTTGAETANDWATSGG-VAWTSYAGIAARVVPSVARAGLYASAQATFATYGVTTWGYVAWS 207          
BLAST of jgi.p|Trimin1|159682 vs. uniprot
Match: A0A6J4FDS3_9PROT (LysM domain-containing protein n=2 Tax=Magnetospirillum sp. LM-5 TaxID=2681466 RepID=A0A6J4FDS3_9PROT)

HSP 1 Score: 224 bits (570), Expect = 3.190e-69
Identity = 108/210 (51.43%), Postives = 148/210 (70.48%), Query Frame = 1
Query:  112 AAVKGYYDQTWQQRAAPSGTNLGVAFGGWADVDQALADAQQVYNNLVGSKYLDIGGGDSNGRWTSNSITKLNNGLGKIKSAGYVGVCYDIEEGDAGLSTAFANSFAKAKAAGLKVLVTISHSQPYGFSDAATIMNTMFASASVDYVSPQLYTSGGETANDWTVDGGAIGWRSYASSKGKIVPSVVKASMYANAQSTFQSYGVTTAGYITW 741
            AA  GY+ +TW     P+G NLG+AF GW D DQAL+++      LVG+KYL +GGG+ NGR++++ + K+N+ +     A Y G+ YD+EEGD+GLS  FA SFA AKAAGLKVLVT+SHS PYG +DAA +M   F   ++D++SPQLYTSG ETANDW    G + W+SY ++K  ++PS+V AS+YA+A++     GVTT GY+ W
Sbjct:   88 AANIGYWRRTWLSVTPPAGANLGIAFSGWTDPDQALSNSAATVAGLVGTKYLGLGGGNENGRFSADLLQKINSAIAAGSFAAYQGLAYDVEEGDSGLSVPFAQSFAAAKAAGLKVLVTVSHSGPYGIADAAQLMEGFFQDGNIDFLSPQLYTSGSETANDWATTAG-VTWQSYGTAKAAVIPSIVTASLYADAKTVLAQAGVTTQGYVVW 296          
BLAST of jgi.p|Trimin1|159682 vs. uniprot
Match: A0A1U9JM14_9NEIS (Uncharacterized protein n=1 Tax=Aquaspirillum sp. LM1 TaxID=1938604 RepID=A0A1U9JM14_9NEIS)

HSP 1 Score: 206 bits (525), Expect = 5.960e-62
Identity = 100/211 (47.39%), Postives = 147/211 (69.67%), Query Frame = 1
Query:  112 AAVKGYYDQTWQQRAAPSGTNLGVAFGGWADVDQALADAQQVYNNLVGSKYLDIGGGDSNGRWTSNSITKLNNGLGKIKSAGYVGVCYDIEEGDAGLSTAFANSFAKAKAAGLKVLVTISHSQPYGFSDAATIMNTMFASASVDYVSPQLYTSGGETANDWTVDGGAIGWRSYASSKGKIVPSVVKASMYANAQSTFQSYGVTTAGYITWA 744
            A+V GY+  +W   +AP+G NLG+AF GW   D+AL+++  V N L G K++ +GGG+S+G W+++++  +   +   + AGY G+ YDIEEG AGL   FA SFA AKA G+ VLVT+SHS PYG +DA ++MN+ FA+  +D +SPQLYT+G ET+ND+T     + W +YA ++  IVPS+V+A++Y +AQS F   GVT  G++ WA
Sbjct:  127 ASVLGYWCWSWDAGSAPAGANLGIAFSGWVSPDEALSNSLAVVNQLQGKKFICLGGGNSSGAWSNDAVNAVTQAIEANRFAGYHGIAYDIEEGSAGLEAQFAASFAAAKAKGMTVLVTVSHSCPYGITDAVSLMNSFFANRDIDLLSPQLYTTGQETSNDYTALN--VPWSAYAQAQAAIVPSIVRANLYPSAQSYFADQGVTLGGFVQWA 335          
BLAST of jgi.p|Trimin1|159682 vs. uniprot
Match: A0A853HYY9_9GAMM (LysM peptidoglycan-binding domain-containing protein n=1 Tax=Endozoicomonas sp. SM1973 TaxID=2751884 RepID=A0A853HYY9_9GAMM)

HSP 1 Score: 206 bits (523), Expect = 1.490e-61
Identity = 100/211 (47.39%), Postives = 138/211 (65.40%), Query Frame = 1
Query:  112 AAVKGYYDQTWQQRAAPSGTNLGVAFGGWADVDQALADAQQVYNNLVGSKYLDIGGGDSNGRWTSNSITKLNNGLGKIKSAGYVGVCYDIEEGDAGLSTAFANSFAKAKAAGLKVLVTISHSQPYGFSDAATIMNTMFASASVDYVSPQLYTSGGETANDWTVDGGAIGWRSYASSKGKIVPSVVKASMYANAQSTFQSYGVTTAGYITWA 744
            A+  GYYD TW   +  +  NLG+AF GW D  QAL+D+  VYN+L G KY+ +GGG+ NG WT++S++++ + +     + Y G+ YDIE GD+GL T+F  SF  AK   L VLVT+SHS PYG SDA+T+M + F S ++D +SPQLYT+G ET ND+ +  G + W  YA +K +IV S+VKA MY +A   F    V   GY+ WA
Sbjct:  133 ASTVGYYDWTWSPTSPTADANLGIAFSGWVDPQQALSDSNNVYNDLAGKKYISLGGGNDNGSWTNSSLSEVTSAINNSDFSQYDGIVYDIEVGDSGLETSFKQSFQAAKKNNLSVLVTVSHSAPYGISDASTLMQSFFNSNNIDILSPQLYTTGNETENDYAISQG-VQWSQYAEAKPEIVVSIVKADMYQSAVQYFSKVNVNLKGYLVWA 342          
BLAST of jgi.p|Trimin1|159682 vs. uniprot
Match: Q2W0C5_MAGSA (Uncharacterized protein n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) TaxID=342108 RepID=Q2W0C5_MAGSA)

HSP 1 Score: 202 bits (514), Expect = 2.600e-60
Identity = 98/207 (47.34%), Postives = 138/207 (66.67%), Query Frame = 1
Query:  124 GYYDQTWQQRAAPSGTNLGVAFGGWADVDQALADAQQVYNNLVGSKYLDIGGGDSNGRWTSNSITKLNNGLGKIKSAGYVGVCYDIEEGDAGLSTAFANSFAKAKAAGLKVLVTISHSQPYGFSDAATIMNTMFASASVDYVSPQLYTSGGETANDWTVDGGA-IGWRSYASSKGKIVPSVVKASMYANAQSTFQSYGVTTAGYITW 741
            GY+ +TW     PSG  LG+AF GWAD   ALAD+    + L G KY+ +GGG+ NGR+T+  + K+N  +   + A Y G+ YDIE GD+GL++AF  +FA AKA G  VLVT+SH+ PYG  DA T+M   F  A++D++SPQLYT+G ETAND+ +  G  + W  YA ++  ++PS+V AS+Y +AQ    ++GVTT GY+ W
Sbjct:  128 GYWRRTWGACVPPSGATLGLAFSGWADPASALADSAAALSGLEGVKYITLGGGNDNGRFTAQDLDKINAAITGGQFAAYGGIAYDIENGDSGLASAFQGAFALAKANGFLVLVTVSHTAPYGIGDADTLMAAFFQDANIDFLSPQLYTNGDETANDYQITSGTTVTWAQYAKARAAVIPSIVTASLYPDAQQVLANHGVTTQGYVVW 334          
BLAST of jgi.p|Trimin1|159682 vs. uniprot
Match: UPI0013D5E995 (LysM peptidoglycan-binding domain-containing protein n=1 Tax=Spartinivicinus ruber TaxID=2683272 RepID=UPI0013D5E995)

HSP 1 Score: 202 bits (514), Expect = 3.070e-60
Identity = 97/207 (46.86%), Postives = 134/207 (64.73%), Query Frame = 1
Query:  124 GYYDQTWQQRAAPSGTNLGVAFGGWADVDQALADAQQVYNNLVGSKYLDIGGGDSNGRWTSNSITKLNNGLGKIKSAGYVGVCYDIEEGDAGLSTAFANSFAKAKAAGLKVLVTISHSQPYGFSDAATIMNTMFASASVDYVSPQLYTSGGETANDWTVDGGAIGWRSYASSKGKIVPSVVKASMYANAQSTFQSYGVTTAGYITWA 744
            GYYD TW     PSG  LG+AF GW D  +AL+++  VY++L G KY+ +GGG+ NG WTS+S++ + + +     + Y G+ YD+E G AGL T F  SF  AK   L VLVT+SHS PYG SDA  +M + F+S ++D +SPQLYT+G ET ND+ V  G + W  YA++K ++V S+VKA MY +A     + GV   GY+ WA
Sbjct:  134 GYYDWTWSPTTPPSGATLGIAFSGWVDPQEALSNSNNVYSDLAGKKYISLGGGNDNGSWTSSSLSSVTDAINNADFSKYDGIVYDVEVGSAGLETQFEQSFLAAKKQSLSVLVTVSHSAPYGISDAPQLMKSFFSSGNIDMLSPQLYTTGYETENDYAVSQG-VQWSEYANAKAEVVVSIVKADMYQSAVQYLSNVGVDLKGYVVWA 339          
BLAST of jgi.p|Trimin1|159682 vs. uniprot
Match: A0A1Q8ZZ87_9HYPH (LysM domain-containing protein n=2 Tax=Rhizobium taibaishanense TaxID=887144 RepID=A0A1Q8ZZ87_9HYPH)

HSP 1 Score: 200 bits (508), Expect = 2.440e-59
Identity = 98/206 (47.57%), Postives = 142/206 (68.93%), Query Frame = 1
Query:  124 GYYDQTWQQRAAPSGTNLGVAFGGWADVDQALADAQQVYNNLVGSKYLDIGGGDSNGRWTSNSITKLNNGLGKIKSAGYVGVCYDIEEGDAGLSTAFANSFAKAKAAGLKVLVTISHSQPYGFSDAATIMNTMFASASVDYVSPQLYTSGGETANDWTVDGGAIGWRSYASSKGKIVPSVVKASMYANAQSTFQSYGVTTAGYITW 741
            GY+D+TW + AAP+   +G+AF G++D  +ALA +  V  NL G KY+ +GGG+ +G ++   +  +N+ +     +   G+ YD+EEG +GLS AF NSF+ AKAA L VLVT+SHS P+G +DA T+M + F+ A++D++SPQLYTSG ET+NDW   GG + W +Y  +K  IVPS+  A++Y NAQ+TF  + V TAGYI W
Sbjct:  136 GYWDKTWHRVAAPANATMGLAFSGYSDPSKALAQSATVIANLAGVKYITLGGGNQDGSFSVPILDSINSAIRHGAFSHCQGIAYDVEEGSSGLSAAFRNSFSIAKAASLSVLVTVSHSTPFGVADAKTLMASFFSDANIDFLSPQLYTSGSETSNDWATSGG-VTWDAYKDAKAAIVPSITHANLYDNAQATFAHHQVKTAGYIVW 340          
BLAST of jgi.p|Trimin1|159682 vs. uniprot
Match: F2JYB1_MARM1 (Peptidoglycan-binding lysin domain n=1 Tax=Marinomonas mediterranea (strain ATCC 700492 / JCM 21426 / NBRC 103028 / MMB-1) TaxID=717774 RepID=F2JYB1_MARM1)

HSP 1 Score: 199 bits (505), Expect = 6.500e-59
Identity = 107/222 (48.20%), Postives = 140/222 (63.06%), Query Frame = 1
Query:   82 APLHHCLSLFAAVKGYYDQTWQQRAAPSGTNLGVAFGGWADVDQALADAQQVYNNLVGSKYLDIGGGDSNGRWTSNSITKLNNGLGKIKSAGYVGVCYDIEEGDAGLSTAFANSFAKAKAAGLKVLVTISHSQPYGFSDAATIMNTMFASASVDYVSPQLYTSGGETANDW-TVDGGAIGWRSYASSKGKIVPSVVKASMYANAQSTFQSYGVTTAGYITWA 744
            AP    L+  A   GY++ TW   + PS   L +AF GW D   AL D+ QV  +LVG+KYL  GGG+ NG++T+ S+  + + +   K  GY GV YD+EEGD+ L   FA SF  AK AGLKVLVT+SHS PYG +DA  +M + FA +++D +SPQLYT G ET ND+ T  G +  W  YAS+K  IVPS+V + +Y +A   F   GVT AGYI WA
Sbjct:  117 APTQDNLAPNAINMGYWNWTWSGTSNPSNATLSLAFSGWTDPTTALQDSHQVKPSLVGTKYLTFGGGNDNGKFTALSLQDITSAIQSGKLEGYEGVAYDVEEGDSHLENDFAVSFKAAKDAGLKVLVTVSHSAPYGITDADALMQSFFADSNIDLLSPQLYTEGDETENDYQTTSGTSTTWEDYASAKAAIVPSIVTSDLYDSATGYFTEQGVTLAGYIQWA 338          
BLAST of jgi.p|Trimin1|159682 vs. uniprot
Match: UPI00146A2EFB (LysM peptidoglycan-binding domain-containing protein n=2 Tax=Shewanella TaxID=22 RepID=UPI00146A2EFB)

HSP 1 Score: 196 bits (498), Expect = 6.180e-58
Identity = 105/235 (44.68%), Postives = 147/235 (62.55%), Query Frame = 1
Query:   40 TAAPLTVTQCACSLAPLHHCLSLFAAVKGYYDQTWQQRAAPSGTNLGVAFGGWADVDQALADAQQVYNNLVGSKYLDIGGGDSNGRWTSNSITKLNNGLGKIKSAGYVGVCYDIEEGDAGLSTAFANSFAKAKAAGLKVLVTISHSQPYGFSDAATIMNTMFASASVDYVSPQLYTSGGETANDWTVDGGAIGWRSYASSKGKIVPSVVKASMYANAQSTFQSYGVTTAGYITWA 744
            TAAP+ VT                A  +GY+  T+ Q A P+   + +AF GWADV  AL D+     +LVG+K+L +GGG+ +G +TS ++T L   +   +  GY G+ YD+EEG +GL + F  SFA AK+ G KVLVT+SHS PYG +D+A +M + FA A++D++SPQLYTSG ET ND++   G + W  YA+ K KIVPS+V ASMY  A+  F   GV+  G++ WA
Sbjct:  114 TAAPMPVTN---------------AEYRGYWAWTYSQSAVPANATMSMAFSGWADVQTALQDSAPKLAHLVGTKFLCVGGGNQSGAFTSANLTALTAAIQAGECVGYDGIAYDVEEGYSGLESLFTASFATAKSKGFKVLVTVSHSAPYGITDSAALMKSFFADANIDFLSPQLYTSGKETGNDYSTSHG-VSWSDYAACKAKIVPSLVNASMYDAAKDYFAGQGVSIRGFVQWA 332          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|159682 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CN73_9STRA8.800e-174100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YVP6_9STRA4.480e-8863.94Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A6J4FDS3_9PROT3.190e-6951.43LysM domain-containing protein n=2 Tax=Magnetospir... [more]
A0A1U9JM14_9NEIS5.960e-6247.39Uncharacterized protein n=1 Tax=Aquaspirillum sp. ... [more]
A0A853HYY9_9GAMM1.490e-6147.39LysM peptidoglycan-binding domain-containing prote... [more]
Q2W0C5_MAGSA2.600e-6047.34Uncharacterized protein n=1 Tax=Magnetospirillum m... [more]
UPI0013D5E9953.070e-6046.86LysM peptidoglycan-binding domain-containing prote... [more]
A0A1Q8ZZ87_9HYPH2.440e-5947.57LysM domain-containing protein n=2 Tax=Rhizobium t... [more]
F2JYB1_MARM16.500e-5948.20Peptidoglycan-binding lysin domain n=1 Tax=Marinom... [more]
UPI00146A2EFB6.180e-5844.68LysM peptidoglycan-binding domain-containing prote... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_10contigContig_10:397301..398047 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|159682|e_gw1.10.103.1
DescriptionLysM domain
COG categoryM
Max annot lvl1236|Gammaproteobacteria
EggNOG OGsCOG1388@1|root,COG1388@2|Bacteria,1P9XK@1224|Proteobacteria,1SVF3@1236|Gammaproteobacteria
Evalue1.06e-59
Seed ortholog717774.Marme_2712
Hectar predicted targeting categoryother localisation
TranscriptId160004
TrackFilteredModels1
ProteinId159682
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|159682gene_4263Tribonema minus UTEX_B_3156 geneContig_10 397301..398047 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4263_1exon_4263_1Tribonema minus UTEX_B_3156 exonContig_10 397301..398047 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4263CDS_4263Tribonema minus UTEX_B_3156 CDSContig_10 397301..398047 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|159682Trimin1|159682|e_gw1.10.103.1Tribonema minus UTEX_B_3156 polypeptideContig_10 397301..398047 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4263 ID=mRNA_4263|Name=jgi.p|Trimin1|159682|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=747bp|location=Sequence derived from alignment at Contig_10:397301..398047+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCACTCGCCAAATGCCAGCGGCACCGCCGCGGCGGCCACCGCTGCGCC
ACTCACAGTGACTCAATGTGCTTGCTCCCTTGCGCCTCTGCACCATTGCT
TGTCACTATTCGCTGCAGTCAAGGGCTACTACGATCAGACCTGGCAGCAG
CGCGCCGCCCCCTCCGGCACCAACCTCGGCGTCGCCTTTGGCGGCTGGGC
TGACGTGGACCAGGCACTGGCCGACGCGCAGCAGGTGTACAACAACCTCG
TTGGCTCCAAGTACCTGGACATCGGTGGCGGCGATTCCAACGGCCGCTGG
ACTAGCAACAGCATCACCAAGCTGAACAACGGCCTCGGCAAGATCAAGAG
CGCCGGCTACGTTGGCGTCTGCTATGACATCGAGGAGGGCGACGCCGGCC
TCTCCACCGCTTTCGCCAACTCGTTTGCCAAGGCTAAGGCAGCCGGCCTC
AAGGTTCTGGTCACCATCTCTCACAGCCAGCCTTACGGCTTCAGCGACGC
AGCCACCATCATGAACACGATGTTCGCCTCAGCCAGTGTTGACTACGTGT
CCCCCCAGCTGTACACTTCAGGCGGCGAAACGGCCAACGACTGGACGGTG
GATGGCGGCGCCATCGGCTGGCGCTCCTACGCCAGTTCCAAGGGCAAGAT
TGTGCCCAGCGTTGTCAAGGCGTCCATGTACGCCAACGCGCAGTCCACCT
TCCAGAGTTACGGCGTCACCACCGCTGGCTACATCACATGGGCGTGA
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protein sequence of jgi.p|Trimin1|159682

>Trimin1|159682|e_gw1.10.103.1 ID=Trimin1|159682|e_gw1.10.103.1|Name=jgi.p|Trimin1|159682|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=249bp
MHSPNASGTAAAATAAPLTVTQCACSLAPLHHCLSLFAAVKGYYDQTWQQ
RAAPSGTNLGVAFGGWADVDQALADAQQVYNNLVGSKYLDIGGGDSNGRW
TSNSITKLNNGLGKIKSAGYVGVCYDIEEGDAGLSTAFANSFAKAKAAGL
KVLVTISHSQPYGFSDAATIMNTMFASASVDYVSPQLYTSGGETANDWTV
DGGAIGWRSYASSKGKIVPSVVKASMYANAQSTFQSYGVTTAGYITWA*
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mRNA from alignment at Contig_10:397301..398047+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4263 ID=mRNA_4263|Name=jgi.p|Trimin1|159682|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=747bp|location=Sequence derived from alignment at Contig_10:397301..398047+ (Tribonema minus UTEX_B_3156 )
ATGCACTCGCCAAATGCCAGCGGCACCGCCGCGGCGGCCACCGCTGCGCC ACTCACAGTGACTCAATGTGCTTGCTCCCTTGCGCCTCTGCACCATTGCT TGTCACTATTCGCTGCAGTCAAGGGCTACTACGATCAGACCTGGCAGCAG CGCGCCGCCCCCTCCGGCACCAACCTCGGCGTCGCCTTTGGCGGCTGGGC TGACGTGGACCAGGCACTGGCCGACGCGCAGCAGGTGTACAACAACCTCG TTGGCTCCAAGTACCTGGACATCGGTGGCGGCGATTCCAACGGCCGCTGG ACTAGCAACAGCATCACCAAGCTGAACAACGGCCTCGGCAAGATCAAGAG CGCCGGCTACGTTGGCGTCTGCTATGACATCGAGGAGGGCGACGCCGGCC TCTCCACCGCTTTCGCCAACTCGTTTGCCAAGGCTAAGGCAGCCGGCCTC AAGGTTCTGGTCACCATCTCTCACAGCCAGCCTTACGGCTTCAGCGACGC AGCCACCATCATGAACACGATGTTCGCCTCAGCCAGTGTTGACTACGTGT CCCCCCAGCTGTACACTTCAGGCGGCGAAACGGCCAACGACTGGACGGTG GATGGCGGCGCCATCGGCTGGCGCTCCTACGCCAGTTCCAAGGGCAAGAT TGTGCCCAGCGTTGTCAAGGCGTCCATGTACGCCAACGCGCAGTCCACCT TCCAGAGTTACGGCGTCACCACCGCTGGCTACATCACATGGGCGTGA
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Coding sequence (CDS) from alignment at Contig_10:397301..398047+

>mRNA_4263 ID=mRNA_4263|Name=jgi.p|Trimin1|159682|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=747bp|location=Sequence derived from alignment at Contig_10:397301..398047+ (Tribonema minus UTEX_B_3156 )
ATGCACTCGCCAAATGCCAGCGGCACCGCCGCGGCGGCCACCGCTGCGCC
ACTCACAGTGACTCAATGTGCTTGCTCCCTTGCGCCTCTGCACCATTGCT
TGTCACTATTCGCTGCAGTCAAGGGCTACTACGATCAGACCTGGCAGCAG
CGCGCCGCCCCCTCCGGCACCAACCTCGGCGTCGCCTTTGGCGGCTGGGC
TGACGTGGACCAGGCACTGGCCGACGCGCAGCAGGTGTACAACAACCTCG
TTGGCTCCAAGTACCTGGACATCGGTGGCGGCGATTCCAACGGCCGCTGG
ACTAGCAACAGCATCACCAAGCTGAACAACGGCCTCGGCAAGATCAAGAG
CGCCGGCTACGTTGGCGTCTGCTATGACATCGAGGAGGGCGACGCCGGCC
TCTCCACCGCTTTCGCCAACTCGTTTGCCAAGGCTAAGGCAGCCGGCCTC
AAGGTTCTGGTCACCATCTCTCACAGCCAGCCTTACGGCTTCAGCGACGC
AGCCACCATCATGAACACGATGTTCGCCTCAGCCAGTGTTGACTACGTGT
CCCCCCAGCTGTACACTTCAGGCGGCGAAACGGCCAACGACTGGACGGTG
GATGGCGGCGCCATCGGCTGGCGCTCCTACGCCAGTTCCAAGGGCAAGAT
TGTGCCCAGCGTTGTCAAGGCGTCCATGTACGCCAACGCGCAGTCCACCT
TCCAGAGTTACGGCGTCACCACCGCTGGCTACATCACATGGGCGTGA
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