mRNA_4263 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|159682 vs. uniprot
Match: A0A836CN73_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN73_9STRA) HSP 1 Score: 487 bits (1253), Expect = 8.800e-174 Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 1
Query: 1 MHSPNASGTAAAATAAPLTVTQCACSLAPLHHCLSLFAAVKGYYDQTWQQRAAPSGTNLGVAFGGWADVDQALADAQQVYNNLVGSKYLDIGGGDSNGRWTSNSITKLNNGLGKIKSAGYVGVCYDIEEGDAGLSTAFANSFAKAKAAGLKVLVTISHSQPYGFSDAATIMNTMFASASVDYVSPQLYTSGGETANDWTVDGGAIGWRSYASSKGKIVPSVVKASMYANAQSTFQSYGVTTAGYITWA 744
MHSPNASGTAAAATAAPLTVTQCACSLAPLHHCLSLFAAVKGYYDQTWQQRAAPSGTNLGVAFGGWADVDQALADAQQVYNNLVGSKYLDIGGGDSNGRWTSNSITKLNNGLGKIKSAGYVGVCYDIEEGDAGLSTAFANSFAKAKAAGLKVLVTISHSQPYGFSDAATIMNTMFASASVDYVSPQLYTSGGETANDWTVDGGAIGWRSYASSKGKIVPSVVKASMYANAQSTFQSYGVTTAGYITWA
Sbjct: 1 MHSPNASGTAAAATAAPLTVTQCACSLAPLHHCLSLFAAVKGYYDQTWQQRAAPSGTNLGVAFGGWADVDQALADAQQVYNNLVGSKYLDIGGGDSNGRWTSNSITKLNNGLGKIKSAGYVGVCYDIEEGDAGLSTAFANSFAKAKAAGLKVLVTISHSQPYGFSDAATIMNTMFASASVDYVSPQLYTSGGETANDWTVDGGAIGWRSYASSKGKIVPSVVKASMYANAQSTFQSYGVTTAGYITWA 248
BLAST of jgi.p|Trimin1|159682 vs. uniprot
Match: A0A835YVP6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVP6_9STRA) HSP 1 Score: 268 bits (686), Expect = 4.480e-88 Identity = 133/208 (63.94%), Postives = 162/208 (77.88%), Query Frame = 1
Query: 124 GYYDQTWQQ-RAAPSGTNLGVAFGGWADVDQALADAQQVYNNLVGSKYLDIGGGDSNGRWTSNSITKLNNGLGKIKSAGYVGVCYDIEEGDAGLSTAFANSFAKAKAAGLKVLVTISHSQPYGFSDAATIMNTMFASASVDYVSPQLYTSGGETANDWTVDGGAIGWRSYASSKGKIVPSVVKASMYANAQSTFQSYGVTTAGYITWA 744
GYY QTW R AP+GT LGVAFGGWADV AL+DA ++ L G+KYLD+GGG+ +G WT+ ITKL+ L +K+AGYVG+CYDIEEG GL+ AFA SFA AKAAGLKVLVTISHS PYGF DAA +M+ +FASASVDY+SPQLYT+G ETANDW GG + W SYA ++VPSV +A +YA+AQ+TF +YGVTT GY+ W+
Sbjct: 1 GYYHQTWDAARTAPAGTTLGVAFGGWADVTLALSDATNTFSKLGGAKYLDVGGGNGSGAWTAALITKLDANLAVVKNAGYVGICYDIEEGVTGLAPAFAASFANAKAAGLKVLVTISHSAPYGFPDAAAVMSAVFASASVDYLSPQLYTTGAETANDWATSGG-VAWTSYAGIAARVVPSVARAGLYASAQATFATYGVTTWGYVAWS 207
BLAST of jgi.p|Trimin1|159682 vs. uniprot
Match: A0A6J4FDS3_9PROT (LysM domain-containing protein n=2 Tax=Magnetospirillum sp. LM-5 TaxID=2681466 RepID=A0A6J4FDS3_9PROT) HSP 1 Score: 224 bits (570), Expect = 3.190e-69 Identity = 108/210 (51.43%), Postives = 148/210 (70.48%), Query Frame = 1
Query: 112 AAVKGYYDQTWQQRAAPSGTNLGVAFGGWADVDQALADAQQVYNNLVGSKYLDIGGGDSNGRWTSNSITKLNNGLGKIKSAGYVGVCYDIEEGDAGLSTAFANSFAKAKAAGLKVLVTISHSQPYGFSDAATIMNTMFASASVDYVSPQLYTSGGETANDWTVDGGAIGWRSYASSKGKIVPSVVKASMYANAQSTFQSYGVTTAGYITW 741
AA GY+ +TW P+G NLG+AF GW D DQAL+++ LVG+KYL +GGG+ NGR++++ + K+N+ + A Y G+ YD+EEGD+GLS FA SFA AKAAGLKVLVT+SHS PYG +DAA +M F ++D++SPQLYTSG ETANDW G + W+SY ++K ++PS+V AS+YA+A++ GVTT GY+ W
Sbjct: 88 AANIGYWRRTWLSVTPPAGANLGIAFSGWTDPDQALSNSAATVAGLVGTKYLGLGGGNENGRFSADLLQKINSAIAAGSFAAYQGLAYDVEEGDSGLSVPFAQSFAAAKAAGLKVLVTVSHSGPYGIADAAQLMEGFFQDGNIDFLSPQLYTSGSETANDWATTAG-VTWQSYGTAKAAVIPSIVTASLYADAKTVLAQAGVTTQGYVVW 296
BLAST of jgi.p|Trimin1|159682 vs. uniprot
Match: A0A1U9JM14_9NEIS (Uncharacterized protein n=1 Tax=Aquaspirillum sp. LM1 TaxID=1938604 RepID=A0A1U9JM14_9NEIS) HSP 1 Score: 206 bits (525), Expect = 5.960e-62 Identity = 100/211 (47.39%), Postives = 147/211 (69.67%), Query Frame = 1
Query: 112 AAVKGYYDQTWQQRAAPSGTNLGVAFGGWADVDQALADAQQVYNNLVGSKYLDIGGGDSNGRWTSNSITKLNNGLGKIKSAGYVGVCYDIEEGDAGLSTAFANSFAKAKAAGLKVLVTISHSQPYGFSDAATIMNTMFASASVDYVSPQLYTSGGETANDWTVDGGAIGWRSYASSKGKIVPSVVKASMYANAQSTFQSYGVTTAGYITWA 744
A+V GY+ +W +AP+G NLG+AF GW D+AL+++ V N L G K++ +GGG+S+G W+++++ + + + AGY G+ YDIEEG AGL FA SFA AKA G+ VLVT+SHS PYG +DA ++MN+ FA+ +D +SPQLYT+G ET+ND+T + W +YA ++ IVPS+V+A++Y +AQS F GVT G++ WA
Sbjct: 127 ASVLGYWCWSWDAGSAPAGANLGIAFSGWVSPDEALSNSLAVVNQLQGKKFICLGGGNSSGAWSNDAVNAVTQAIEANRFAGYHGIAYDIEEGSAGLEAQFAASFAAAKAKGMTVLVTVSHSCPYGITDAVSLMNSFFANRDIDLLSPQLYTTGQETSNDYTALN--VPWSAYAQAQAAIVPSIVRANLYPSAQSYFADQGVTLGGFVQWA 335
BLAST of jgi.p|Trimin1|159682 vs. uniprot
Match: A0A853HYY9_9GAMM (LysM peptidoglycan-binding domain-containing protein n=1 Tax=Endozoicomonas sp. SM1973 TaxID=2751884 RepID=A0A853HYY9_9GAMM) HSP 1 Score: 206 bits (523), Expect = 1.490e-61 Identity = 100/211 (47.39%), Postives = 138/211 (65.40%), Query Frame = 1
Query: 112 AAVKGYYDQTWQQRAAPSGTNLGVAFGGWADVDQALADAQQVYNNLVGSKYLDIGGGDSNGRWTSNSITKLNNGLGKIKSAGYVGVCYDIEEGDAGLSTAFANSFAKAKAAGLKVLVTISHSQPYGFSDAATIMNTMFASASVDYVSPQLYTSGGETANDWTVDGGAIGWRSYASSKGKIVPSVVKASMYANAQSTFQSYGVTTAGYITWA 744
A+ GYYD TW + + NLG+AF GW D QAL+D+ VYN+L G KY+ +GGG+ NG WT++S++++ + + + Y G+ YDIE GD+GL T+F SF AK L VLVT+SHS PYG SDA+T+M + F S ++D +SPQLYT+G ET ND+ + G + W YA +K +IV S+VKA MY +A F V GY+ WA
Sbjct: 133 ASTVGYYDWTWSPTSPTADANLGIAFSGWVDPQQALSDSNNVYNDLAGKKYISLGGGNDNGSWTNSSLSEVTSAINNSDFSQYDGIVYDIEVGDSGLETSFKQSFQAAKKNNLSVLVTVSHSAPYGISDASTLMQSFFNSNNIDILSPQLYTTGNETENDYAISQG-VQWSQYAEAKPEIVVSIVKADMYQSAVQYFSKVNVNLKGYLVWA 342
BLAST of jgi.p|Trimin1|159682 vs. uniprot
Match: Q2W0C5_MAGSA (Uncharacterized protein n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) TaxID=342108 RepID=Q2W0C5_MAGSA) HSP 1 Score: 202 bits (514), Expect = 2.600e-60 Identity = 98/207 (47.34%), Postives = 138/207 (66.67%), Query Frame = 1
Query: 124 GYYDQTWQQRAAPSGTNLGVAFGGWADVDQALADAQQVYNNLVGSKYLDIGGGDSNGRWTSNSITKLNNGLGKIKSAGYVGVCYDIEEGDAGLSTAFANSFAKAKAAGLKVLVTISHSQPYGFSDAATIMNTMFASASVDYVSPQLYTSGGETANDWTVDGGA-IGWRSYASSKGKIVPSVVKASMYANAQSTFQSYGVTTAGYITW 741
GY+ +TW PSG LG+AF GWAD ALAD+ + L G KY+ +GGG+ NGR+T+ + K+N + + A Y G+ YDIE GD+GL++AF +FA AKA G VLVT+SH+ PYG DA T+M F A++D++SPQLYT+G ETAND+ + G + W YA ++ ++PS+V AS+Y +AQ ++GVTT GY+ W
Sbjct: 128 GYWRRTWGACVPPSGATLGLAFSGWADPASALADSAAALSGLEGVKYITLGGGNDNGRFTAQDLDKINAAITGGQFAAYGGIAYDIENGDSGLASAFQGAFALAKANGFLVLVTVSHTAPYGIGDADTLMAAFFQDANIDFLSPQLYTNGDETANDYQITSGTTVTWAQYAKARAAVIPSIVTASLYPDAQQVLANHGVTTQGYVVW 334
BLAST of jgi.p|Trimin1|159682 vs. uniprot
Match: UPI0013D5E995 (LysM peptidoglycan-binding domain-containing protein n=1 Tax=Spartinivicinus ruber TaxID=2683272 RepID=UPI0013D5E995) HSP 1 Score: 202 bits (514), Expect = 3.070e-60 Identity = 97/207 (46.86%), Postives = 134/207 (64.73%), Query Frame = 1
Query: 124 GYYDQTWQQRAAPSGTNLGVAFGGWADVDQALADAQQVYNNLVGSKYLDIGGGDSNGRWTSNSITKLNNGLGKIKSAGYVGVCYDIEEGDAGLSTAFANSFAKAKAAGLKVLVTISHSQPYGFSDAATIMNTMFASASVDYVSPQLYTSGGETANDWTVDGGAIGWRSYASSKGKIVPSVVKASMYANAQSTFQSYGVTTAGYITWA 744
GYYD TW PSG LG+AF GW D +AL+++ VY++L G KY+ +GGG+ NG WTS+S++ + + + + Y G+ YD+E G AGL T F SF AK L VLVT+SHS PYG SDA +M + F+S ++D +SPQLYT+G ET ND+ V G + W YA++K ++V S+VKA MY +A + GV GY+ WA
Sbjct: 134 GYYDWTWSPTTPPSGATLGIAFSGWVDPQEALSNSNNVYSDLAGKKYISLGGGNDNGSWTSSSLSSVTDAINNADFSKYDGIVYDVEVGSAGLETQFEQSFLAAKKQSLSVLVTVSHSAPYGISDAPQLMKSFFSSGNIDMLSPQLYTTGYETENDYAVSQG-VQWSEYANAKAEVVVSIVKADMYQSAVQYLSNVGVDLKGYVVWA 339
BLAST of jgi.p|Trimin1|159682 vs. uniprot
Match: A0A1Q8ZZ87_9HYPH (LysM domain-containing protein n=2 Tax=Rhizobium taibaishanense TaxID=887144 RepID=A0A1Q8ZZ87_9HYPH) HSP 1 Score: 200 bits (508), Expect = 2.440e-59 Identity = 98/206 (47.57%), Postives = 142/206 (68.93%), Query Frame = 1
Query: 124 GYYDQTWQQRAAPSGTNLGVAFGGWADVDQALADAQQVYNNLVGSKYLDIGGGDSNGRWTSNSITKLNNGLGKIKSAGYVGVCYDIEEGDAGLSTAFANSFAKAKAAGLKVLVTISHSQPYGFSDAATIMNTMFASASVDYVSPQLYTSGGETANDWTVDGGAIGWRSYASSKGKIVPSVVKASMYANAQSTFQSYGVTTAGYITW 741
GY+D+TW + AAP+ +G+AF G++D +ALA + V NL G KY+ +GGG+ +G ++ + +N+ + + G+ YD+EEG +GLS AF NSF+ AKAA L VLVT+SHS P+G +DA T+M + F+ A++D++SPQLYTSG ET+NDW GG + W +Y +K IVPS+ A++Y NAQ+TF + V TAGYI W
Sbjct: 136 GYWDKTWHRVAAPANATMGLAFSGYSDPSKALAQSATVIANLAGVKYITLGGGNQDGSFSVPILDSINSAIRHGAFSHCQGIAYDVEEGSSGLSAAFRNSFSIAKAASLSVLVTVSHSTPFGVADAKTLMASFFSDANIDFLSPQLYTSGSETSNDWATSGG-VTWDAYKDAKAAIVPSITHANLYDNAQATFAHHQVKTAGYIVW 340
BLAST of jgi.p|Trimin1|159682 vs. uniprot
Match: F2JYB1_MARM1 (Peptidoglycan-binding lysin domain n=1 Tax=Marinomonas mediterranea (strain ATCC 700492 / JCM 21426 / NBRC 103028 / MMB-1) TaxID=717774 RepID=F2JYB1_MARM1) HSP 1 Score: 199 bits (505), Expect = 6.500e-59 Identity = 107/222 (48.20%), Postives = 140/222 (63.06%), Query Frame = 1
Query: 82 APLHHCLSLFAAVKGYYDQTWQQRAAPSGTNLGVAFGGWADVDQALADAQQVYNNLVGSKYLDIGGGDSNGRWTSNSITKLNNGLGKIKSAGYVGVCYDIEEGDAGLSTAFANSFAKAKAAGLKVLVTISHSQPYGFSDAATIMNTMFASASVDYVSPQLYTSGGETANDW-TVDGGAIGWRSYASSKGKIVPSVVKASMYANAQSTFQSYGVTTAGYITWA 744
AP L+ A GY++ TW + PS L +AF GW D AL D+ QV +LVG+KYL GGG+ NG++T+ S+ + + + K GY GV YD+EEGD+ L FA SF AK AGLKVLVT+SHS PYG +DA +M + FA +++D +SPQLYT G ET ND+ T G + W YAS+K IVPS+V + +Y +A F GVT AGYI WA
Sbjct: 117 APTQDNLAPNAINMGYWNWTWSGTSNPSNATLSLAFSGWTDPTTALQDSHQVKPSLVGTKYLTFGGGNDNGKFTALSLQDITSAIQSGKLEGYEGVAYDVEEGDSHLENDFAVSFKAAKDAGLKVLVTVSHSAPYGITDADALMQSFFADSNIDLLSPQLYTEGDETENDYQTTSGTSTTWEDYASAKAAIVPSIVTSDLYDSATGYFTEQGVTLAGYIQWA 338
BLAST of jgi.p|Trimin1|159682 vs. uniprot
Match: UPI00146A2EFB (LysM peptidoglycan-binding domain-containing protein n=2 Tax=Shewanella TaxID=22 RepID=UPI00146A2EFB) HSP 1 Score: 196 bits (498), Expect = 6.180e-58 Identity = 105/235 (44.68%), Postives = 147/235 (62.55%), Query Frame = 1
Query: 40 TAAPLTVTQCACSLAPLHHCLSLFAAVKGYYDQTWQQRAAPSGTNLGVAFGGWADVDQALADAQQVYNNLVGSKYLDIGGGDSNGRWTSNSITKLNNGLGKIKSAGYVGVCYDIEEGDAGLSTAFANSFAKAKAAGLKVLVTISHSQPYGFSDAATIMNTMFASASVDYVSPQLYTSGGETANDWTVDGGAIGWRSYASSKGKIVPSVVKASMYANAQSTFQSYGVTTAGYITWA 744
TAAP+ VT A +GY+ T+ Q A P+ + +AF GWADV AL D+ +LVG+K+L +GGG+ +G +TS ++T L + + GY G+ YD+EEG +GL + F SFA AK+ G KVLVT+SHS PYG +D+A +M + FA A++D++SPQLYTSG ET ND++ G + W YA+ K KIVPS+V ASMY A+ F GV+ G++ WA
Sbjct: 114 TAAPMPVTN---------------AEYRGYWAWTYSQSAVPANATMSMAFSGWADVQTALQDSAPKLAHLVGTKFLCVGGGNQSGAFTSANLTALTAAIQAGECVGYDGIAYDVEEGYSGLESLFTASFATAKSKGFKVLVTVSHSAPYGITDSAALMKSFFADANIDFLSPQLYTSGKETGNDYSTSHG-VSWSDYAACKAKIVPSLVNASMYDAAKDYFAGQGVSIRGFVQWA 332 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|159682 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_4263 ID=mRNA_4263|Name=jgi.p|Trimin1|159682|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=747bp|location=Sequence derived from alignment at Contig_10:397301..398047+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCACTCGCCAAATGCCAGCGGCACCGCCGCGGCGGCCACCGCTGCGCCback to top protein sequence of jgi.p|Trimin1|159682 >Trimin1|159682|e_gw1.10.103.1 ID=Trimin1|159682|e_gw1.10.103.1|Name=jgi.p|Trimin1|159682|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=249bp MHSPNASGTAAAATAAPLTVTQCACSLAPLHHCLSLFAAVKGYYDQTWQQback to top mRNA from alignment at Contig_10:397301..398047+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_4263 ID=mRNA_4263|Name=jgi.p|Trimin1|159682|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=747bp|location=Sequence derived from alignment at Contig_10:397301..398047+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_10:397301..398047+ >mRNA_4263 ID=mRNA_4263|Name=jgi.p|Trimin1|159682|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=747bp|location=Sequence derived from alignment at Contig_10:397301..398047+ (Tribonema minus UTEX_B_3156 )back to top |