mRNA_4249 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|347286
Unique NamemRNA_4249
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|347286 vs. uniprot
Match: A0A836CR91_9STRA (N-acetyltransferase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CR91_9STRA)

HSP 1 Score: 609 bits (1571), Expect = 1.560e-217
Identity = 318/318 (100.00%), Postives = 318/318 (100.00%), Query Frame = 1 
Query:    1 MKAQASASKPVIKLARVPTKAAVGLTKVGKPLSRGRMLRDLDESDIERVLELAYQEFMPPCMQPQDGLWLLFDAVERLSLRWMIQVGFVIRIREGRKGLDHRVLCVASPPARAGGSTDGGAAPLLKALLPHIGGGDELPSQRSAEAPAAAGGDATSILTSTAGASPLGRCLAVAEVSLQPVDAKVPPAIPLPLPLKRLVGLVTPLMPYISNVLVDPECRRQGVGRALMEACEAQPATWGYPWVYLRAAAWGYAWAAAXXXXXXXLHVDVSYEPALRLYYSMGYEAVSDDPAWFAVFDMTRLRYMRKRLAPLPSPQLRA 954
            MKAQASASKPVIKLARVPTKAAVGLTKVGKPLSRGRMLRDLDESDIERVLELAYQEFMPPCMQPQDGLWLLFDAVERLSLRWMIQVGFVIRIREGRKGLDHRVLCVASPPARAGGSTDGGAAPLLKALLPHIGGGDELPSQRSAEAPAAAGGDATSILTSTAGASPLGRCLAVAEVSLQPVDAKVPPAIPLPLPLKRLVGLVTPLMPYISNVLVDPECRRQGVGRALMEACEAQPATWGYPWVYLRAAAWGYAWAAAXXXXXXXLHVDVSYEPALRLYYSMGYEAVSDDPAWFAVFDMTRLRYMRKRLAPLPSPQLRA
Sbjct:    1 MKAQASASKPVIKLARVPTKAAVGLTKVGKPLSRGRMLRDLDESDIERVLELAYQEFMPPCMQPQDGLWLLFDAVERLSLRWMIQVGFVIRIREGRKGLDHRVLCVASPPARAGGSTDGGAAPLLKALLPHIGGGDELPSQRSAEAPAAAGGDATSILTSTAGASPLGRCLAVAEVSLQPVDAKVPPAIPLPLPLKRLVGLVTPLMPYISNVLVDPECRRQGVGRALMEACEAQPATWGYPWVYLRAAAWGYAWAAAXXXXXXXLHVDVSYEPALRLYYSMGYEAVSDDPAWFAVFDMTRLRYMRKRLAPLPSPQLRA 318
[Close]
BLAST of jgi.p|Trimin1|347286 vs. uniprot
Match: A0A6H5JGL4_9PHAE (N-acetyltransferase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGL4_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 3.390e-32
Identity = 108/326 (33.13%), Postives = 142/326 (43.56%), Query Frame = 1 
Query:   52 PTKAAVG---------LTKVGKPLSRGRMLRDLDESDIERVLELAYQEFMPPCMQPQDGL----------WL---------------LFDAVERLSLRWMIQVGFVIRIREGRKGLDHRVLCVASPPA-RAGGSTDGGAAPLLKALLPHIGGGDELPSQRSAEAPAAAGGDATSILTSTAGASPLGRCLAVAEVSLQPVDAKVPPAIPLPLPLKRLVGLVTPLMPYISNVLVDPECRRQGVGRALMEACEAQPATWGYPWVYLRAAAWGYAWAAAXXXXXXXLHVDVSYEPALRLYYSMGYEAVSDDPAWFAVFDMTRLRYMRKRL 924
            PT +A G          T   KPL  GR+LR +  +D++ V+ LA++E+    M    GL          W                L D +E + LR MIQ GF +R + G+ G DHRV C++   A   GG  DGG+ P L AL                                             AE+SLQ  + K  P  P+PL  KR+VG   P++PYISNVLV    RRQG+   LM  CE Q   WG+    L    +              LHVD++Y PA+R+Y +MGYE VSD       F+  RLRYM+K L
Sbjct:  125 PTSSAAGRVVGQSRDAFTFAPKPLREGRVLRAMKRADVDGVVNLAFEEYYNGPMDFSAGLRGGFAVLESAWRSALRNGKFQEADKERLTDWLEMIWLRIMIQWGFSMREQFGKGGRDHRVFCISDEKAGHLGGDGDGGSKPPLAAL---------------------------------------------AEISLQVPNGKTSPPFPVPLWYKRIVGWPGPVLPYISNVLVHRNARRQGLANRLMLRCEKQARDWGFTQARLHKVVY--------------LHVDLTYYPAVRMYETMGYEVVSDLEV---SFENPRLRYMKKIL 388
[Close]
BLAST of jgi.p|Trimin1|347286 vs. uniprot
Match: D8LE20_ECTSI (N-acetyltransferase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE20_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 1.640e-27
Identity = 96/295 (32.54%), Postives = 130/295 (44.07%), Query Frame = 1 
Query:  121 LDESDIERVLELAYQEFMPPCMQPQDGL----------WL---------------LFDAVERLSLRWMIQVGFVIRIREGRKGLDHRVLCVASPPAR-AGGSTDGGAA-PLLKALLPHIGGGDELPSQRSAEAPAAAGGDATSILTSTAGASPLGRCLAVAEVSLQPVDAKVPPAIPLPLPLKRLVGLVTPLMPYISNVLVDPECRRQGVGRALMEACEAQPATWGYPWVYLRAAAWGYAWAAAXXXXXXXLHVDVSYEPALRLYYSMGYEAVSDDPAWFAVFDMTRLRYMRKRL 924
            +  +D++ V+ LA++E+    M    G+          W                L D +E + LR MIQ GF +R + G+ G DHRV C++   AR  GG  +GG++ P L AL                                             AE+SLQ  + K  P  P+PL  KR+VG   P++PYISNVLV    RRQG+   LM  CE Q   WG+  VYL                    HVD++Y PA+R+Y +MGYE VSD       F+  RLRYM+K L
Sbjct:    1 MKRADVDGVVSLAFEEYYNGPMDFSAGIRGGFAVLESAWRSALRNGKFQEADKERLTDWLEMIWLRIMIQWGFSMREQFGKGGRDHRVFCISDEKARNLGGDGEGGSSKPPLAAL---------------------------------------------AEISLQVPNGKTSPPFPVPLWYKRIVGWPGPVLPYISNVLVHRNARRQGLANRLMLRCEKQARDWGFTQVYL--------------------HVDLTYYPAVRMYETMGYEVVSDLEV---SFENPRLRYMKKIL 227
[Close]
BLAST of jgi.p|Trimin1|347286 vs. uniprot
Match: A0A7S2DPT9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DPT9_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.300e-13
Identity = 42/111 (37.84%), Postives = 63/111 (56.76%), Query Frame = 1 
Query:  526 VSLQPVDAKVPPAIPLPLPLKRLVGLVTPLMPYISNVLVDPECRRQGVGRALMEACEAQPATWGYPWVYLRAAAWGYAWAAAXXXXXXXLHVDVSYEPALRLYYSMGYEAV 858
            VS++  D K+ P IPLPL LK+L     P++PYISN+ VDP  +R+G GR L++ACE +  +WG+   Y+                    H D++Y PA+ LY ++GY  +
Sbjct:   56 VSMELADGKLAPTIPLPLLLKKLSAY--PVLPYISNLAVDPSFQRRGHGRELVQACEERADSWGFRVAYV--------------------HCDINYPPAMELYTNLGYRTI 144
[Close]
BLAST of jgi.p|Trimin1|347286 vs. uniprot
Match: A0A7S4K802_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K802_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 3.080e-11
Identity = 85/289 (29.41%), Postives = 108/289 (37.37%), Query Frame = 1 
Query:  109 MLRDLDESDIERVLELAYQEFMPPCMQPQDG--LWLLFDAVERLSLRWMIQVGFVIRIREGRKGL------DHRVLCVASPPARAGGSTDGGAAPLLKALLPHIGGGDELPSQRSAEAPAAAGGDATSILTSTAGASPLGRCLAVAEVSLQPVDAK-VPPAIPLPLPLKRLV----GLVTPLMPYISNVLVDPECRRQGVGRALMEACEAQPATWGYPWVYLRAAAWGYAWAAAXXXXXXXLHVDVSYEPALRLYYSMGYEAV----SDDPAWFAVFDMTRLRYMRKRL 924
            ++R+L ESD+   + +  +EF P    P DG  L  L  A E     W++ +G  +RI   R+GL      DH VLC+        G   GG                                                  +AVAE+SLQP D    PP   LPL  KR++    G   P   Y S VLV P+ R  G GRA + ACE    +WG   V L   A                  D S   A  LY SMGY  V     + P  F V     L+Y+RK L
Sbjct:  128 VVRNLRESDLLPAMNMFVEEFGPRPSDPPDGGPLGRLRAAYETRVFSWVVLMGLYMRIVRAREGLGGRETHDHNVLCLVETSTTDAGRKSGGEV------------------------------------------------VAVAELSLQPPDPMWSPPESILPLSDKRIISREGGFGEPRA-YASTVLVRPDRRGYGYGRAAVAACEGLARSWGCDDVSLHVDA-----------------DDTSGRAAQGLYRSMGYVGVRNADKEAPKDFYVVKGVPLQYLRKNL 350
[Close]
BLAST of jgi.p|Trimin1|347286 vs. uniprot
Match: A0A1Z5K303_FISSO (N-acetyltransferase domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K303_FISSO)

HSP 1 Score: 68.2 bits (165), Expect = 1.570e-9
Identity = 56/156 (35.90%), Postives = 74/156 (47.44%), Query Frame = 1 
Query:  505 RCLAVAEVSLQPV-DAKVPPAIPLPLPLKRLVGLVT--PLMPYISNVLVDPECRRQGVGRALMEACEAQPATWGYPWVYLRAAAWGYAWAAAXXXXXXXLHVDVSYEPALRLYYSMGYEAV--SDDP-------AW---FAVFDMTRLRYMRKRLA 927
            R + + EVS QPV   ++PPA+P+PLPLKR+   VT  P+  +I N+L++P  RR+G+ + L+ A E                  G A A         LH D  Y  A RLY SMGY  V   D P       AW       D   L Y+RK L+
Sbjct:   73 RVIGMIEVSWQPVLPDRIPPAVPIPLPLKRMYCQVTGTPMEAWIGNLLIEPSFRRRGLAKVLVSATE------------------GIA-AQRTGCTSLHLHCDAQYSVAQRLYQSMGYRIVPKEDTPFTFDGGMAWKDSIYFVDGVALLYLRKDLS 209
[Close]
BLAST of jgi.p|Trimin1|347286 vs. uniprot
Match: A0A7S3ATP4_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ATP4_9EUKA)

HSP 1 Score: 62.0 bits (149), Expect = 1.980e-7
Identity = 48/144 (33.33%), Postives = 68/144 (47.22%), Query Frame = 1 
Query:  505 RCLAVAEVSLQPVDAKVPPAIPLPLPLKRLVGLVTPLMPYISNVLVDPECRRQGVGRALMEACEAQPA-TWGYPWVYLRAAAWGYAWAAAXXXXXXXLHVDVSYEPALRLYYSMGYEAVSD--DPAW-FAVFDMTRLRYMRKRL 924
            R L + E+S QP+D +VP  + LP   +   G   P +PY+S++ V+  CRRQG+ RAL+ ACE      WGY  +YL AA                     + E  L +Y   GYE   D   P W  ++      RY R++L
Sbjct:   66 RVLGLVELSEQPMDGRVPGDVRLP---RWASG--DPQVPYVSSLAVERSCRRQGLARALLRACEGVALHEWGYSELYLHAAT--------------------ADETLLGMYQRWGYEQQPDFDQPQWVLSLSGREATRYHRRKL 184
[Close]
BLAST of jgi.p|Trimin1|347286 vs. uniprot
Match: A0A7S4MFP7_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MFP7_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 3.410e-7
Identity = 79/292 (27.05%), Postives = 106/292 (36.30%), Query Frame = 1 
Query:  109 MLRDLDESDIERVLELAYQEFMP-------PCMQPQDG------------------LWLLFDAVERLSLRWMIQVGFVIRIREGRKGL------DHRVLCVASPPARAGGSTDGGAAPLLKALLPHIGGGDELPSQRSAEAPAAAGGDATSILTSTAGASPLGRCLAVAEVSLQPVDAK--VPPAIPLPLPLKRLV----GLVTPLMPYISNVLVDPECRRQGVGRALMEACEAQPATWGYPWVYLRAAAWGYAWAAAXXXXXXXLHVDV---SYEPALRLYYSMGYEAVSD 864
            ++R + ESD+   +++  +EF         P  +  DG                  L  L+   E  S  W+++VG   RI   R+GL      DH +L +   PA A      GA                                              G  +A+AE+SLQP D +   PP + LPL  KR +    G   P   Y+SNVLV P+ R  G GRA+M ACE    +W +  V                     LHVD    S   A  LY SMGY  V D
Sbjct:  173 VVRQMVESDLPPAVDMCVEEFGSYSNPQDDPFRRSADGEGYVVVNNGDTDLSLGKILGPLWTRYENWSFSWVVRVGLFTRILRARQGLEGKEPHDHNLLILVETPADAAAVGQKGA----------------------------------------------GEVVAMAELSLQPPDPERNAPPFV-LPLSAKRAISEKGGFGEPCA-YVSNVLVRPDRRGYGYGRAIMAACEGLARSWDWDNV--------------------SLHVDADVTSGRAAQGLYRSMGYVGVPD 396
[Close]
BLAST of jgi.p|Trimin1|347286 vs. uniprot
Match: A0A7R9WEC5_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WEC5_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.810e-5
Identity = 46/126 (36.51%), Postives = 59/126 (46.83%), Query Frame = 1 
Query:  514 AVAEVSLQPVDA--KVPPAIPLPLPLKRLVGL---VTPLMPYISNVLVDPECRRQGVGRALMEACEAQPATWGYPWVYLRAAAWGYAWAAAXXXXXXXLHVDVSYEP---ALRLYYSMGYEAVSDD 867
            A+AE+SLQP D     PP + LPL  KR +G    V     Y+SNVLV P+ R +G GRA++ ACE    +WG                         LHVD   +    A  LY +MGY  V D+
Sbjct:  155 AIAELSLQPADPLRNAPPYV-LPLSAKRAIGQKAGVGEPRAYVSNVLVRPDRRGRGYGRAVVAACEGLAQSWG--------------------CGDASLHVDADVDSGRAAQGLYRAMGYRGVVDE 259
[Close]
BLAST of jgi.p|Trimin1|347286 vs. uniprot
Match: A0A6P0QJ99_9CYAN (GNAT family N-acetyltransferase n=1 Tax=Microcoleus sp. SIO2G3 TaxID=2607795 RepID=A0A6P0QJ99_9CYAN)

HSP 1 Score: 54.7 bits (130), Expect = 3.270e-5
Identity = 33/109 (30.28%), Postives = 50/109 (45.87%), Query Frame = 1 
Query:  619 PYISNVLVDPECRRQGVGRALMEACEAQPATWGYPWVYLRAAAWGYAWAAAXXXXXXXLHVDVSYEPALRLYYSMGYEAVSDDPAWFA-VFDMTRLRYMRKRLAPLPSP 942
            PYISN+ V   CRR+GV + L+ ACE     WG+P +YL                    HV  +   A +LY   GY+    +P++ A +    +   ++K L   P+P
Sbjct:   80 PYISNLAVSKSCRRRGVAKQLLSACEQTALDWGFPDIYL--------------------HVLENNHQARQLYLKTGYQLYQIEPSYGAWLLGHPKRLLLQKHLITTPNP 168
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347286 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A836CR91_9STRA1.560e-217100.00N-acetyltransferase domain-containing protein n=1 ... [more]
A0A6H5JGL4_9PHAE3.390e-3233.13N-acetyltransferase domain-containing protein n=1 ... [more]
D8LE20_ECTSI1.640e-2732.54N-acetyltransferase domain-containing protein n=1 ... [more]
A0A7S2DPT9_9STRA1.300e-1337.84Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S4K802_9STRA3.080e-1129.41Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A1Z5K303_FISSO1.570e-935.90N-acetyltransferase domain-containing protein n=1 ... [more]
A0A7S3ATP4_9EUKA1.980e-733.33Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S4MFP7_9STRA3.410e-727.05Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7R9WEC5_9STRA1.810e-536.51Hypothetical protein (Fragment) n=2 Tax=Pseudictyo... [more]
A0A6P0QJ99_9CYAN3.270e-530.28GNAT family N-acetyltransferase n=1 Tax=Microcoleu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_10contigContig_10:278829..282453 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|347286|estExt_Genemark1.C_Ctg_100036
Max annot lvl2759|Eukaryota
EggNOG OGs2E7YR@1|root,2SEGS@2759|Eukaryota
Evalue2.13e-22
Seed ortholog2880.D8LE20
Hectar predicted targeting categoryother localisation
TranscriptId347608
TrackFilteredModels1
ProteinId347286
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347286gene_4249Tribonema minus UTEX_B_3156 geneContig_10 278829..282453 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347286Trimin1|347286|estExt_Genemark1.C_Ctg_100036Tribonema minus UTEX_B_3156 polypeptideContig_10 279247..282453 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4249_6exon_4249_6Tribonema minus UTEX_B_3156 exonContig_10 278829..279441 -
exon_4249_5exon_4249_5Tribonema minus UTEX_B_3156 exonContig_10 279563..279586 -
exon_4249_4exon_4249_4Tribonema minus UTEX_B_3156 exonContig_10 279782..279817 -
exon_4249_3exon_4249_3Tribonema minus UTEX_B_3156 exonContig_10 280390..280488 -
exon_4249_2exon_4249_2Tribonema minus UTEX_B_3156 exonContig_10 281010..281417 -
exon_4249_1exon_4249_1Tribonema minus UTEX_B_3156 exonContig_10 282259..282453 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_4249UTR3_4249Tribonema minus UTEX_B_3156 three_prime_UTRContig_10 278829..279246 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4249CDS_4249Tribonema minus UTEX_B_3156 CDSContig_10 282259..282453 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4249 ID=mRNA_4249|Name=jgi.p|Trimin1|347286|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1375bp|location=Sequence derived from alignment at Contig_10:278829..282453- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGCCCAAGCCAGCGCCAGCAAGCCAGTCATCAAGCTGGCTCGTGT
GCCAACAAAGGCGGCGGTGGGCCTCACGAAGGTCGGCAAGCCTTTGAGCC
GCGGACGCATGCTGCGAGACCTTGACGAGAGCGACATTGAGAGAGTATTG
GAGCTGGCATATCAGGAGTTCATGCCGCCATGCATGCAGCCGCAGGATGG
CCTGTGGCTCCTCTTCGACGCCGTGGAGCGCCTGTCGCTGCGCTGGATGA
TACAGGTTGGCTTTGTCATCCGCATTCGCGAGGGGCGCAAGGGGCTCGAC
CACAGGGTCCTCTGCGTCGCCAGCCCCCCTGCGCGCGCCGGCGGCAGCAC
TGACGGCGGCGCTGCACCGCTTCTCAAAGCTCTGCTGCCGCACATCGGCG
GCGGAGACGAGCTTCCCAGCCAGCGGTCTGCAGAGGCGCCAGCGGCGGCA
GGGGGGGATGCAACTTCAATTTTGACTTCAACTGCAGGAGCGTCGCCGCT
CGGGCGGTGCCTGGCGGTGGCAGAGGTGTCGCTGCAGCCTGTGGATGCAA
AGGTGCCGCCCGCGATACCGCTGCCGCTGCCGCTGAAGCGGCTGGTGGGG
CTGGTGACGCCCCTCATGCCGTATATCTCAAATGTGTTGGTGGACCCGGA
GTGCCGGCGGCAAGGCGTTGGGAGGGCGTTGATGGAGGCCTGCGAGGCAC
AGCCGGCCACATGGGGCTACCCGTGGGTGTACCTGCGCGCAGCCGCATGG
GGCTACGCGTGGGCGGCGGCATGGGGCTACCCGTGGGTATACCTGCATGT
GGACGTCAGCTACGAGCCCGCACTGCGCCTGTACTACAGCATGGGCTACG
AGGCAGTTAGCGATGACCCTGCGTGGTTTGCCGTGTTTGACATGACGCGC
CTGCGCTACATGCGCAAGCGCCTCGCGCCGCTGCCGTCGCCGCAGCTCCG
CGCCTGAGCAATGATGCGCCTTGGCTGGCGTGCAGGAGTCGTGGCAATGA
AGCTTTTGTCAGCGAGCAGGGGCCGTGGTTGCAGTTGAAGTTTGCACTTC
AACTGACAAGCTGAAGGCTTGTCGGCCTTGCCGGATGACAAGCTGAAGCT
TTGCTGGTTGAAGTTGAACTTCAACTTGCGATCAGCAGAAGTCACTCACG
GTTGAGAAGCGCCGGCGGCTGTGCGGCAACCTGTCGGGGCACTGGCGCCT
CGACTGTCTCGACTGTCGCGAGCAGAACTCACGCTCACTGTTGAAGTTCG
TGGACTGTAGCATCGTGCTTGTAGAGTCATGCTGCGGTGCTTCGTCAAGT
CTCTGGCAGGACACAAGGCCCTGAGTCTTGCGGGCTTGTGAGCTGTTAGG
GTTGGCCCTAGTCAGTTGGAATTAG
back to top

protein sequence of jgi.p|Trimin1|347286

>Trimin1|347286|estExt_Genemark1.C_Ctg_100036 ID=Trimin1|347286|estExt_Genemark1.C_Ctg_100036|Name=jgi.p|Trimin1|347286|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=319bp
MKAQASASKPVIKLARVPTKAAVGLTKVGKPLSRGRMLRDLDESDIERVL
ELAYQEFMPPCMQPQDGLWLLFDAVERLSLRWMIQVGFVIRIREGRKGLD
HRVLCVASPPARAGGSTDGGAAPLLKALLPHIGGGDELPSQRSAEAPAAA
GGDATSILTSTAGASPLGRCLAVAEVSLQPVDAKVPPAIPLPLPLKRLVG
LVTPLMPYISNVLVDPECRRQGVGRALMEACEAQPATWGYPWVYLRAAAW
GYAWAAAWGYPWVYLHVDVSYEPALRLYYSMGYEAVSDDPAWFAVFDMTR
LRYMRKRLAPLPSPQLRA*
back to top

mRNA from alignment at Contig_10:278829..282453-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4249 ID=mRNA_4249|Name=jgi.p|Trimin1|347286|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3625bp|location=Sequence derived from alignment at Contig_10:278829..282453- (Tribonema minus UTEX_B_3156 )
ATGAAGGCCCAAGCCAGCGCCAGCAAGCCAGTCATCAAGCTGGCTCGTGT
GCCAACAAAGGCGGCGGTGGGCCTCACGAAGGTCGGCAAGCCTTTGAGCC
GCGGACGCATGCTGCGAGACCTTGACGAGAGCGACATTGAGAGAGTATTG
GAGCTGGCATATCAGGAGTTCATGCCGCCATGCATGCAGCCGCAGGTACG
CGAGAATATGAGCACTCCAGTGGCCTCTGTTCTCTGTCAGTGACTACTGG
CTCTGCGTAGCGCACTGGTGCACACATGTGTCATTTCTCAAAGTGTGCAC
TCAAACGTTGGAGTGCTGAATCACTGCTGTGCTAACATCGAGAGTGTGGC
CAAGTTCGTCTAGAGTAGTGCGCCAGATCATGCCTTTCCCCATTGGTCAT
CATGGTGCGCGATCTGTTTAACGTGCTGCAGCTACATATGCTGCGTGTGG
CACTTCGAAAATGCTGGCAGCAACTCATAAGTGACATGAAGTGGTCTTGG
CATATGTGCTTGCTGCCCACACTCAACGCCCGAGCACGCGCCGCTGTGAT
ATAGCATGCCAATCGAACTCTGTGCCCCATGTTAGCAGCAGGATCAAGCA
GATTCTGCCTACAACTGCAGGTGATCACTGACACGGTTGTGGCTTCACTG
TAGCTGAACCGTGACATCATGTTGTTGACACCTGTATGCATGTCTGCAGC
CATGATGGAACTGTACAATTGTCATATGCTCAAATCTTTGGCCCCTGACT
TAAGACATTGCTGGATGAGCAAAGGCATCTGCGCTCGCTGTGCACGTGCC
TATTGCAGATTACACCTTGTTTGCGTGCTCGCAAGCTTGCGCAGGACACC
GTGTCTCCTATGTAACGCGCTCTCTGGGATGCATCCCACATCAATACACA
TGCCGCCAAATCTCATTACGCTGATGCCAGAAGACATTCCACATGACCCA
GATTCGCACGCACTACTCCCCTCGCGACGCTCAACCCCCCCCCCCCCACA
CACACACCCACGTCCACCCCCTCTGTGCCCCCCCAGGATGGCCTGTGGCT
CCTCTTCGACGCCGTGGAGCGCCTGTCGCTGCGCTGGATGATACAGGTTG
GCTTTGTCATCCGCATTCGCGAGGGGCGCAAGGGGCTCGACCACAGGGTC
CTCTGCGTCGCCAGCCCCCCTGCGCGCGCCGGCGGCAGCACTGACGGCGG
CGCTGCACCGCTTCTCAAAGCTCTGCTGCCGCACATCGGCGGCGGAGACG
AGCTTCCCAGCCAGCGGTCTGCAGAGGCGCCAGCGGCGGCAGGGGGGGAT
GCAACTTCAATTTTGACTTCAACTGCAGGAGCGTCGCCGCTCGGGCGGTG
CCTGGCGGTGGCAGAGGTGTCGCTGCAGCCTGTGGATGCAAAGGTGCCGC
CCGCGATACCGCTGCCGCTGCCGCTGAAGCGGCTGGTGGGGCTGGTGAGT
GGACGACCCGAAGCGCATACTTGGCAAAACTTTACACTTGAGGTTAATGT
TGAAGGCCAAGGCAATGTTTAATTCCAAGTTTGATATGGGATACCCCATT
TATTACACCCGTGCATGATCTGTGTGGCAGCGGCGGCGAGAGCGGTAGCG
AGAGCAGGGAGACTCCACTGCAGATGTGCGCGTGTGCAATGGAATGGGGC
AGCGATGGAATACTATGCATGTATACACCATGAAGCATGCGAAGAAGGGG
GATGAAACAACACATCAATGCACCACCAGTAGGCATGCCATCATCAAGTG
CTTGAATGTTGCTGCATCACATTGTGCCAGCAGGTGCTTGGAGCATTGCG
TATCGCGTATAGGAACGCTGTCAGACGTGCTAGCATGGGCACAGCCGAAA
AGGTTGCAAACCAACCTCCTAACACCACAATTCCAGTTGCACTATGCAGG
GCACATTTGCGCGTGCCTGACATGTGTGTGCATCTGCATTTGTCTTTGGA
CTCAAACGTCAACAGGTGACGCCCCTCATGCCGTATATCTCAAATGTGTT
GGTGGACCCGGAGTGCCGGCGGCAAGGCGTTGGGAGGGCGTTGATGGAGG
CCTGCGAGGCACAGGTAAACCCTAGGATTAGGGTTAACGAGCCCTAGCCT
TCATTGTGATTGTGTTTCAAACACTGTGTTTGGCAATTGGTCAATGAGCC
TTAGCATTAGGGTCAACGACCGCTAGCATTAGGCTCATGACCTCTAGCAT
TAGTGCTTGAGTCATCGATATTGGGTCAACGCCTGCTGCAAGCACCGCCC
AGCACCACAATGAAATGCATGCATTTTCCATGATTTGCTCGTGGACTGAA
CACTGCAGACCGCCATGCATCTGCCATGGCTCAATAAATGCGATGTTGCA
GGATCAGGCTCACATGCATATATGAGCGGTTGACACTTCAGTACGGTCCT
GCAGCTTGCGTAGCACATCCCGGTGCTGCAGCTGACCACTCCGCCGTTCC
TTGCGTTGTGCTCCTAGGCCTAAGCCCACCTACACCCCCTGTGTGCGCTG
CAGGCTGCTGTATGGGGCTTGTCGTGGGTATACCTGCATGTGACGCATGC
ACTTGCGTATACCCCCGTTTCTTTACACTTAACCCCAACAACTAGCCCCT
AACCCTAGCTACGTACCCCCCTTGCGTGTGCTGCAGCCGGCCACATGGGG
CTACCCGTGGGTGTACCTGCGCGTGGACACATTTTCTTGCGTATACCCCT
ATTTTCCTCCATTGGAACCCATCAATTAGCCCTACCCCTACCTATGCACG
CCCTCTGCTGTGTGCAGGTGGACACATTTTCTCCCATATACCCCTATTTC
TTTCCACTAGAACCCAACCACAAGCCCCTGACCCTACCTACGTACCCCCC
CCTACTGTGTGCTGCAGGCAGCCGCATGGGGCTACGCGTGGGTATACCTG
CACGCGGACGCATGCACTTACGTCTACCCCTATTTCTTTTTACAAACCCC
CCCCCAATTACCCAATTACTAGCCCTAACCGTACCTGCGCACCGCCCTTT
TGTGTGCTGCAGGCGGCGGCATGGGGCTACCCGTGGGTATACCTGCATGT
GGACGTCAGCTACGAGCCCGCACTGCGCCTGTACTACAGCATGGGCTACG
AGGCAGTTAGCGATGACCCTGCGTGGTTTGCCGTGTTTGACATGACGCGC
CTGCGCTACATGCGCAAGCGCCTCGCGCCGCTGCCGTCGCCGCAGCTCCG
CGCCTGAGCAATGATGCGCCTTGGCTGGCGTGCAGGAGTCGTGGCAATGA
AGCTTTTGTCAGCGAGCAGGGGCCGTGGTTGCAGTTGAAGTTTGCACTTC
AACTGACAAGCTGAAGGCTTGTCGGCCTTGCCGGATGACAAGCTGAAGCT
TTGCTGGTTGAAGTTGAACTTCAACTTGCGATCAGCAGAAGTCACTCACG
GTTGAGAAGCGCCGGCGGCTGTGCGGCAACCTGTCGGGGCACTGGCGCCT
CGACTGTCTCGACTGTCGCGAGCAGAACTCACGCTCACTGTTGAAGTTCG
TGGACTGTAGCATCGTGCTTGTAGAGTCATGCTGCGGTGCTTCGTCAAGT
CTCTGGCAGGACACAAGGCCCTGAGTCTTGCGGGCTTGTGAGCTGTTAGG
GTTGGCCCTAGTCAGTTGGAATTAG
back to top

Coding sequence (CDS) from alignment at Contig_10:278829..282453-

>mRNA_4249 ID=mRNA_4249|Name=jgi.p|Trimin1|347286|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=957bp|location=Sequence derived from alignment at Contig_10:278829..282453- (Tribonema minus UTEX_B_3156 )
ATGAAGGCCCAAGCCAGCGCCAGCAAGCCAGTCATCAAGCTGGCTCGTGT
GCCAACAAAGGCGGCGGTGGGCCTCACGAAGGTCGGCAAGCCTTTGAGCC
GCGGACGCATGCTGCGAGACCTTGACGAGAGCGACATTGAGAGAGTATTG
GAGCTGGCATATCAGGAGTTCATGCCGCCATGCATGCAGCCGCAGGATGG
CCTGTGGCTCCTCTTCGACGCCGTGGAGCGCCTGTCGCTGCGCTGGATGA
TACAGGTTGGCTTTGTCATCCGCATTCGCGAGGGGCGCAAGGGGCTCGAC
CACAGGGTCCTCTGCGTCGCCAGCCCCCCTGCGCGCGCCGGCGGCAGCAC
TGACGGCGGCGCTGCACCGCTTCTCAAAGCTCTGCTGCCGCACATCGGCG
GCGGAGACGAGCTTCCCAGCCAGCGGTCTGCAGAGGCGCCAGCGGCGGCA
GGGGGGGATGCAACTTCAATTTTGACTTCAACTGCAGGAGCGTCGCCGCT
CGGGCGGTGCCTGGCGGTGGCAGAGGTGTCGCTGCAGCCTGTGGATGCAA
AGGTGCCGCCCGCGATACCGCTGCCGCTGCCGCTGAAGCGGCTGGTGGGG
CTGGTGACGCCCCTCATGCCGTATATCTCAAATGTGTTGGTGGACCCGGA
GTGCCGGCGGCAAGGCGTTGGGAGGGCGTTGATGGAGGCCTGCGAGGCAC
AGCCGGCCACATGGGGCTACCCGTGGGTGTACCTGCGCGCAGCCGCATGG
GGCTACGCGTGGGCGGCGGCATGGGGCTACCCGTGGGTATACCTGCATGT
GGACGTCAGCTACGAGCCCGCACTGCGCCTGTACTACAGCATGGGCTACG
AGGCAGTTAGCGATGACCCTGCGTGGTTTGCCGTGTTTGACATGACGCGC
CTGCGCTACATGCGCAAGCGCCTCGCGCCGCTGCCGTCGCCGCAGCTCCG
CGCCTGA
back to top