mRNA_4224 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|159831
Unique NamemRNA_4224
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|159831 vs. uniprot
Match: A0A835ZPT5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPT5_9STRA)

HSP 1 Score: 129 bits (323), Expect = 7.370e-31
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 1 
Query:    1 MLPLLRTALRVTDSGPQSDVLTLVKVLSVKISVAELPDSIGDLSGLIKLDLAECARLTILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELVVCHCRLQTXXXXXXXXXXXXXXDMHLCGNLAR 462
            MLPLLRTALRVTDSGPQSDVLTLVKVLSVKISVAELPDSIGDLSGLIKLDLAECARLTILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELVVCHCRLQTXXXXXXXXXXXXXXDMHLCGNLAR
Sbjct:    1 MLPLLRTALRVTDSGPQSDVLTLVKVLSVKISVAELPDSIGDLSGLIKLDLAECARLTILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELVVCHCRLQTXXXXXXXXXXXXXXDMHLCGNLAR 154
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BLAST of jgi.p|Trimin1|159831 vs. uniprot
Match: A0A835Z149_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z149_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 7.280e-10
Identity = 38/59 (64.41%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:    1 MLPLLRTALRVTDSGPQSDVLTLVKVLSVKISVAELPDSIGDLSGLIKLDLAECARLTI 177
            MLPLLRTALR+TDSGPQSDVLTLV+          LPDS+GDL  L  LDL  C RLT+
Sbjct:  157 MLPLLRTALRLTDSGPQSDVLTLVR---------RLPDSVGDLRALTALDLRACTRLTL 206
[Close]
BLAST of jgi.p|Trimin1|159831 vs. uniprot
Match: A0A835ZKN5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKN5_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 5.880e-9
Identity = 40/58 (68.97%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:    1 MLPLLRTALRVTDSGPQSDVLTLVKVLSVKISVAELPDSIGDLSGLIKLDLAECARLT 174
            +LP+LRTALRVTDSGPQSD+LTLVKVL VK     LPDSIG LS L  LDL+    LT
Sbjct:  259 ILPMLRTALRVTDSGPQSDLLTLVKVLLVK----RLPDSIGALSALTALDLSSNEELT 312
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|159831 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835ZPT5_9STRA7.370e-31100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z149_9STRA7.280e-1064.41Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZKN5_9STRA5.880e-968.97Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_10contigContig_10:119248..120273 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|159831|e_gw1.10.174.1
Hectar predicted targeting categoryother localisation
TranscriptId160153
TrackFilteredModels1
ProteinId159831
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|159831gene_4224Tribonema minus UTEX_B_3156 geneContig_10 119248..120273 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4224_1exon_4224_1Tribonema minus UTEX_B_3156 exonContig_10 119248..120273 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4224CDS_4224Tribonema minus UTEX_B_3156 CDSContig_10 119248..120273 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|159831Trimin1|159831|e_gw1.10.174.1Tribonema minus UTEX_B_3156 polypeptideContig_10 119248..120273 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4224 ID=mRNA_4224|Name=jgi.p|Trimin1|159831|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1026bp|location=Sequence derived from alignment at Contig_10:119248..120273- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGCCGCTGCTGCGCACAGCTCTGCGTGTCACAGATTCCGGCCCCCA
GTCTGATGTGCTCACGCTAGTCAAGGTACTGTCGGTAAAAATTTCGGTTG
CAGAGCTGCCTGATTCAATCGGTGACTTGTCGGGGCTGATCAAGCTTGAT
CTGGCTGAATGCGCCAGGCTCACTATTTTGCCCAGCAGCATAGGCAGGTT
GACTGCGTCGACAGCGCTTAAACTCATTGGGTGCGATCAGCTCACTGCCC
TGCCAGACAGCGTTGGCCAGTTGTCCGCACTGACATACCTCAACCTGAGC
TACTGTACAAGGCTCACTAGTCTGCCGGAGAGCATCGGCGACCGTGCAGC
ATTGACGGAGCTGGTGGTGTGTCACTGCAGGCTTCAGACACTTCCAGAAA
GCATTGGCAATCTTGCTTCTTTGACAGAGCTTGATATGCACTTGTGCGGC
AACCTTGCGAGGCTGCCAGACAGTGTTGGTGCCCTGTCCGCATTGACGGC
TCTTGACCTCACCTACAACAAAGAGCTCACGGGCTTGCCCGACAGCTTTG
CCAATCTGGCCGCATTGACCTATCTGGACTTGAGCTGTTGCACCAAGCTG
GCAAGCTTGCCGGAGAGCATAGGCAGGCTGTCGGCTTTGACGCAGCTTGA
ACTCATAGAGTGCGTTGTTCTCCAGCGGTTGCCAGACTGTGTTGGTGACC
TGCAGGCACTGACGTCACTCAACTTGGACGGCTGCACGCGGCTGACCACA
TTGCCAGACTCCATCGGCAACCTCAAAGCTCTGAGGTGCCTTAACTTGAG
GCTCTGCACAGAGCTGTCGCAGCTGCCGGACTCCATCGGCAACTTGGCAG
CGCTCAGATATTTGATCTTGGCGGGTTGCAGCGGACTGGTGAGCCTGCCG
GCCACGCTGGGCCAGCTGCCGCTGCTGCAGCACATACAAGTCGACGGCTG
CTGCGAGCTTGTCAGGACATCTGCCGCAACATTCACAGGGCGCGCCTTGA
CACACCCTAACGACTCGGGAAAATAG
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protein sequence of jgi.p|Trimin1|159831

>Trimin1|159831|e_gw1.10.174.1 ID=Trimin1|159831|e_gw1.10.174.1|Name=jgi.p|Trimin1|159831|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=342bp
MLPLLRTALRVTDSGPQSDVLTLVKVLSVKISVAELPDSIGDLSGLIKLD
LAECARLTILPSSIGRLTASTALKLIGCDQLTALPDSVGQLSALTYLNLS
YCTRLTSLPESIGDRAALTELVVCHCRLQTLPESIGNLASLTELDMHLCG
NLARLPDSVGALSALTALDLTYNKELTGLPDSFANLAALTYLDLSCCTKL
ASLPESIGRLSALTQLELIECVVLQRLPDCVGDLQALTSLNLDGCTRLTT
LPDSIGNLKALRCLNLRLCTELSQLPDSIGNLAALRYLILAGCSGLVSLP
ATLGQLPLLQHIQVDGCCELVRTSAATFTGRALTHPNDSGK*
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mRNA from alignment at Contig_10:119248..120273-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4224 ID=mRNA_4224|Name=jgi.p|Trimin1|159831|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1026bp|location=Sequence derived from alignment at Contig_10:119248..120273- (Tribonema minus UTEX_B_3156 )
ATGTTGCCGCTGCTGCGCACAGCTCTGCGTGTCACAGATTCCGGCCCCCA
GTCTGATGTGCTCACGCTAGTCAAGGTACTGTCGGTAAAAATTTCGGTTG
CAGAGCTGCCTGATTCAATCGGTGACTTGTCGGGGCTGATCAAGCTTGAT
CTGGCTGAATGCGCCAGGCTCACTATTTTGCCCAGCAGCATAGGCAGGTT
GACTGCGTCGACAGCGCTTAAACTCATTGGGTGCGATCAGCTCACTGCCC
TGCCAGACAGCGTTGGCCAGTTGTCCGCACTGACATACCTCAACCTGAGC
TACTGTACAAGGCTCACTAGTCTGCCGGAGAGCATCGGCGACCGTGCAGC
ATTGACGGAGCTGGTGGTGTGTCACTGCAGGCTTCAGACACTTCCAGAAA
GCATTGGCAATCTTGCTTCTTTGACAGAGCTTGATATGCACTTGTGCGGC
AACCTTGCGAGGCTGCCAGACAGTGTTGGTGCCCTGTCCGCATTGACGGC
TCTTGACCTCACCTACAACAAAGAGCTCACGGGCTTGCCCGACAGCTTTG
CCAATCTGGCCGCATTGACCTATCTGGACTTGAGCTGTTGCACCAAGCTG
GCAAGCTTGCCGGAGAGCATAGGCAGGCTGTCGGCTTTGACGCAGCTTGA
ACTCATAGAGTGCGTTGTTCTCCAGCGGTTGCCAGACTGTGTTGGTGACC
TGCAGGCACTGACGTCACTCAACTTGGACGGCTGCACGCGGCTGACCACA
TTGCCAGACTCCATCGGCAACCTCAAAGCTCTGAGGTGCCTTAACTTGAG
GCTCTGCACAGAGCTGTCGCAGCTGCCGGACTCCATCGGCAACTTGGCAG
CGCTCAGATATTTGATCTTGGCGGGTTGCAGCGGACTGGTGAGCCTGCCG
GCCACGCTGGGCCAGCTGCCGCTGCTGCAGCACATACAAGTCGACGGCTG
CTGCGAGCTTGTCAGGACATCTGCCGCAACATTCACAGGGCGCGCCTTGA
CACACCCTAACGACTCGGGAAAATAG
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Coding sequence (CDS) from alignment at Contig_10:119248..120273-

>mRNA_4224 ID=mRNA_4224|Name=jgi.p|Trimin1|159831|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1026bp|location=Sequence derived from alignment at Contig_10:119248..120273- (Tribonema minus UTEX_B_3156 )
ATGTTGCCGCTGCTGCGCACAGCTCTGCGTGTCACAGATTCCGGCCCCCA
GTCTGATGTGCTCACGCTAGTCAAGGTACTGTCGGTAAAAATTTCGGTTG
CAGAGCTGCCTGATTCAATCGGTGACTTGTCGGGGCTGATCAAGCTTGAT
CTGGCTGAATGCGCCAGGCTCACTATTTTGCCCAGCAGCATAGGCAGGTT
GACTGCGTCGACAGCGCTTAAACTCATTGGGTGCGATCAGCTCACTGCCC
TGCCAGACAGCGTTGGCCAGTTGTCCGCACTGACATACCTCAACCTGAGC
TACTGTACAAGGCTCACTAGTCTGCCGGAGAGCATCGGCGACCGTGCAGC
ATTGACGGAGCTGGTGGTGTGTCACTGCAGGCTTCAGACACTTCCAGAAA
GCATTGGCAATCTTGCTTCTTTGACAGAGCTTGATATGCACTTGTGCGGC
AACCTTGCGAGGCTGCCAGACAGTGTTGGTGCCCTGTCCGCATTGACGGC
TCTTGACCTCACCTACAACAAAGAGCTCACGGGCTTGCCCGACAGCTTTG
CCAATCTGGCCGCATTGACCTATCTGGACTTGAGCTGTTGCACCAAGCTG
GCAAGCTTGCCGGAGAGCATAGGCAGGCTGTCGGCTTTGACGCAGCTTGA
ACTCATAGAGTGCGTTGTTCTCCAGCGGTTGCCAGACTGTGTTGGTGACC
TGCAGGCACTGACGTCACTCAACTTGGACGGCTGCACGCGGCTGACCACA
TTGCCAGACTCCATCGGCAACCTCAAAGCTCTGAGGTGCCTTAACTTGAG
GCTCTGCACAGAGCTGTCGCAGCTGCCGGACTCCATCGGCAACTTGGCAG
CGCTCAGATATTTGATCTTGGCGGGTTGCAGCGGACTGGTGAGCCTGCCG
GCCACGCTGGGCCAGCTGCCGCTGCTGCAGCACATACAAGTCGACGGCTG
CTGCGAGCTTGTCAGGACATCTGCCGCAACATTCACAGGGCGCGCCTTGA
CACACCCTAACGACTCGGGAAAATAG
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