mRNA_4206 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|162345
Unique NamemRNA_4206
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|162345 vs. uniprot
Match: A0A836CJX2_9STRA (Cyclin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJX2_9STRA)

HSP 1 Score: 573 bits (1476), Expect = 8.560e-205
Identity = 337/337 (100.00%), Postives = 337/337 (100.00%), Query Frame = 1 
Query:    1 MLQQALQNCTFSVTVGDEHDLNVAFLQCYGQHYVAWLYVQELQLRPADYMHRQPNVGANSRSTVVDWLVEVCGSYKLGASTLFLCVELLDRSLTALCTARCDLQRLACACLLLAAKHEEEQAPSSSALACISDNAFSRAGVLRTEAQVLVALEFRVSCATPYQYAALYCAAAGCDARQARLCLYILELSLLDYTLVHTYVPSLRAAAAAFLARATMCTSAAAAAGAAWPPTAARFSGYGAAQLEACARRMHALHEGAEDALLRAVREKHARPGALRVAALCCASDAHLRCALRGSADAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTMATRLQQ 1011
            MLQQALQNCTFSVTVGDEHDLNVAFLQCYGQHYVAWLYVQELQLRPADYMHRQPNVGANSRSTVVDWLVEVCGSYKLGASTLFLCVELLDRSLTALCTARCDLQRLACACLLLAAKHEEEQAPSSSALACISDNAFSRAGVLRTEAQVLVALEFRVSCATPYQYAALYCAAAGCDARQARLCLYILELSLLDYTLVHTYVPSLRAAAAAFLARATMCTSAAAAAGAAWPPTAARFSGYGAAQLEACARRMHALHEGAEDALLRAVREKHARPGALRVAALCCASDAHLRCALRGSADAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTMATRLQQ
Sbjct:    1 MLQQALQNCTFSVTVGDEHDLNVAFLQCYGQHYVAWLYVQELQLRPADYMHRQPNVGANSRSTVVDWLVEVCGSYKLGASTLFLCVELLDRSLTALCTARCDLQRLACACLLLAAKHEEEQAPSSSALACISDNAFSRAGVLRTEAQVLVALEFRVSCATPYQYAALYCAAAGCDARQARLCLYILELSLLDYTLVHTYVPSLRAAAAAFLARATMCTSAAAAAGAAWPPTAARFSGYGAAQLEACARRMHALHEGAEDALLRAVREKHARPGALRVAALCCASDAHLRCALRGSADAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTMATRLQQ 337
[Close]
BLAST of jgi.p|Trimin1|162345 vs. uniprot
Match: A0A835YJW4_9STRA (Cyclin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJW4_9STRA)

HSP 1 Score: 223 bits (569), Expect = 1.180e-65
Identity = 136/267 (50.94%), Postives = 180/267 (67.42%), Query Frame = 1 
Query:   73 FLQCYGQHYVAWLYVQE--LQLRPADYMHR-QPNVGANSRSTVVDWLVEVCGSYKLGASTLFLCVELLDRSLTALCTARCDLQRLACACLLLAAKHEEEQAPSSSALACISDNAFSRAGVLRTEAQVLVALEFRVSCATPYQYAALYCAAAGCDARQARLCLYILELSLLDYTLVHTYVPSLRAAAAAFLARATMCTSAAAAAGAAWPPTAARFSGYGAAQLEACARRMHALHEGAEDALLRAVREKHARPGALRVAALCCASDAHL 864
            F +CYG  Y  WL  QE  L+ RP  Y+ + Q ++ A  RST++DWLVEVC  ++L   T FL +ELLDRSL+A C  R +LQ L CACLL+AAK EEE  PS ++L  ISD+A++ + ++R E QVL  L F VSC TP+ +AA + AAAGC+ARQ  LCLY+LEL+LLDY+LV + +PS +AAAAA LAR TM        G AW   A +F+GY AA LE C RRM  LHE AE++ L A+R+++ +    RVA +CC  ++ L
Sbjct:  212 FNRCYGAQYQHWLRTQEANLKFRPTAYLTQVQRDLRAVMRSTLIDWLVEVCTEFRLQPGTPFLVIELLDRSLSAFCVNRDNLQLLGCACLLVAAKFEEEHPPSVNSLVYISDSAYTISDMVRMEGQVLQHLNFAVSCVTPHHFAAEFSAAAGCNARQGYLCLYLLELALLDYSLV-SLLPSHKAAAAALLARMTMRRG-----GGAWSALARQFTGYSAATLEPCVRRMRVLHESAENSKLHAIRDRYCKQERHRVALVCCLKESEL 472
[Close]
BLAST of jgi.p|Trimin1|162345 vs. uniprot
Match: D7FS66_ECTSI (Putative cyclin A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS66_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 2.450e-45
Identity = 115/278 (41.37%), Postives = 166/278 (59.71%), Query Frame = 1 
Query:   46 GDEHDLNVAFLQCYGQHYVAWLYVQELQLRPADYMH-RQPNVGANSRSTVVDWLVEVCGSYKLGASTLFLCVELLDRSLTALCTARCDLQRLACACLLLAAKHEEEQAPSSSALACISDNAFSRAGVLRTEAQVLVALEFRVSCATPYQYAALYCAAAGCDARQARLCLYILELSLLDYTLVHTYVPSLRAAAAAFLARATM----CTSAAAAAGAAWPPTAARFSGYGAAQLEACARRMHALHEGAEDALLRAVREKHARPGALRVAALCCASDAHL 864
            G+ H LN      Y + +  +L  QE + RP  Y+  +Q ++  + RS +VDW+ EVC  +KL + TLF  V+L+DRSL+A    R  LQ L CAC++LA+K+EE  AP++  LA ISDN ++RA ++  E  V+ AL+FR++C TP  +   +C AA  +AR+  L  Y+LEL L DY  V + +PSL+AAAA +LAR T+    C   A      W      ++GY A +LE C RR+H LH  AE   L AVR+K+ +    RVA + CA + +L
Sbjct:   65 GESHLLNPD----YAKEHALYLREQEKRNRPVAYIGAKQKDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTCITPCNFQDRFCLAAKSNARERSLVSYLLELLLQDYQGV-SLLPSLKAAAALYLARQTLHPRGCPREA------WTRQTEHYTGYAARELEPCVRRLHYLHVRAEGNNLHAVRDKYKKSALHRVAEVTCALEDYL 331
[Close]
BLAST of jgi.p|Trimin1|162345 vs. uniprot
Match: A0A6H5L2E4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E4_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 8.370e-42
Identity = 114/278 (41.01%), Postives = 165/278 (59.35%), Query Frame = 1 
Query:   46 GDEHDLNVAFLQCYGQHYVAWLYVQELQLRPADYMH-RQPNVGANSRSTVVDWLVEVCGSYKLGASTLFLCVELLDRSLTALCTARCDLQRLACACLLLAAKHEEEQAPSSSALACISDNAFSRAGVLRTEAQVLVALEFRVSCATPYQYAALYCAAAGCDARQARLCLYILELSLLDYTLVHTYVPSLRAAAAAFLARATM----CTSAAAAAGAAWPPTAARFSGYGAAQLEACARRMHALHEGAEDALLRAVREKHARPGALRVAALCCASDAHL 864
            G+ H LN      Y + +  +L  QE + RP  Y+  +Q ++  + RS +VDW+ EVC  +KL + TLF  V+L+DRSL+A    R  LQ L CAC++LA+K+EE  AP++  LA ISDN ++RA ++  E  V+ AL+FR++  TP  +   +C AA  +AR+  L  Y+LEL L DY  V + +PSL+AAAA +LAR T+    C   A      W      ++GY A +LE C RR+H LH  AE   L AVR+K+ +    RVA + CA + +L
Sbjct:  305 GESHLLNPD----YAKQHALYLREQEKRNRPVAYIGTKQRDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTSITPCNFQDRFCLAAKSNARERSLVSYLLELLLQDYQGV-SLLPSLKAAAALYLARQTLHPRGCPREA------WTRQTEHYTGYAARELEPCVRRLHYLHVRAEGNNLHAVRDKYKKSALHRVAEVTCALEDYL 571
[Close]
BLAST of jgi.p|Trimin1|162345 vs. uniprot
Match: W7T499_9STRA (Cyclin-like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T499_9STRA)

HSP 1 Score: 124 bits (312), Expect = 6.380e-29
Identity = 102/277 (36.82%), Postives = 145/277 (52.35%), Query Frame = 1 
Query:   76 LQCYGQHYVAWLYVQEL--QLRPA-DYMHRQPN--VGANSRSTVVDWLVEVCGSYKLGASTLFLCVELLDRSLTALCTARCDLQRLACACLLLAAKHEEEQAPSSSALACISDNAFSRAGVLRTEAQVLVALEFRVSCATPYQYAALYCAAAGCDARQARLCLYILELSLLDYTLVHTYVPSLRAAAAAFLARATMCTSAAAAAGAA------WPPTAARFSGYGAAQ---LEACARRMHALHEGAEDALLRAVREKHARPGALRVAALCCASDAHL 864
            L  Y + Y A+L  +E   Q RP  DYM R     +  + R+ +VDWLV VC   +L  STL+ CVEL+DR+L+ L   +  LQ + CACL +A K EE   PS      ++  +FS+  +   E +V+ AL FR+S  T Y + + +  AAG   R+  L  Y  ELSLL Y  +  + PS+RAAAA +LAR T+  S   +A  A      W PT A ++GY  A    L+ C R +   H G E +   A++ K+  P  L V  + C  +  L
Sbjct:  111 LASYSRDYFAYLREREREQQDRPLPDYMSRIQGGALTQDMRALLVDWLVTVCEECELMPSTLYHCVELIDRALSKLQVPKEQLQCMGCACLFIACKFEETTVPSLEEFTYMAAESFSKKQLTDLELRVVEALSFRLSTVTAYNFLSRFTLAAGSGPRETALVYYFSELSLLHYEFLG-FSPSIRAAAALYLARQTLAVSNTDSARRAAEERNIWTPTIAFYTGYSPATTLPLQECVRLLRRAHAGVEYSPYEALKLKYGAPALLHVGDIACVEEKDL 386
[Close]
BLAST of jgi.p|Trimin1|162345 vs. uniprot
Match: A0A7S1AYF8_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1AYF8_NOCSC)

HSP 1 Score: 120 bits (301), Expect = 9.510e-27
Identity = 90/257 (35.02%), Postives = 134/257 (52.14%), Query Frame = 1 
Query:   64 NVAFLQCYGQHYVAWLYVQELQLRPAD-YMHRQPNVGANSRSTVVDWLVEVCGSYKLGASTLFLCVELLDRSLTALCTARCDLQRLACACLLLAAKHEEEQAPSSSALACISDNAFSRAGVLRTEAQVLVALEFRVSCATPYQYAALYCAAAGCDARQARLCLYILELSLLDYTLVHTYVPSLRAAAAAFLARATMCTSAAAAAGAAWPPTAARFSGYGAAQLEACARRMHALHEGAEDALLRAVREK--HARPGAL 825
            N+  +  Y QH    L  ++LQ +P   Y+ RQP++    R+ +VDWLV+V G+YKL   TLFL + L+D+ L    TAR  LQ +  AC+++A+K EE  AP       IS +A++   V+  E QVL AL+FR+   T   +       AGCD        ++LEL+L++Y+++  Y PS   AAA  LAR     +        WP   A       A LE C + +  +   +E   L+AVR+K  H+R G +
Sbjct:  246 NIQEVAEYAQHIHEMLLREQLQSQPDPAYLDRQPHLSVKMRAILVDWLVDVAGNYKLSTGTLFLLIRLIDKYLDKRQTARKQLQLVGVACMMIASKFEEVYAPEVRDFVYISADAYTAEEVINMETQVLAALDFRIVTPTAAPFFERITKVAGCDETTKNFVQFLLELALVEYSMIK-YPPSHLVAAAMLLARRLFNLTPV------WPNLLAEDMDVSEATLEPCVQELRTIWRASERGDLQAVRKKFKHSRYGGI 495
[Close]
BLAST of jgi.p|Trimin1|162345 vs. uniprot
Match: A0A7S4II30_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4II30_9EUKA)

HSP 1 Score: 114 bits (285), Expect = 2.480e-25
Identity = 95/262 (36.26%), Postives = 136/262 (51.91%), Query Frame = 1 
Query:   79 QCYGQHYVA--WLYVQELQLR---PADYMHRQPNVGANSRSTVVDWLVEVCGSYKLGASTLFLCVELLDRSLTALCTARCDLQRLACACLLLAAKHEEEQAPSSSALACISDNAFSRAGVLRTEAQVLVALEFRVSCATPYQYAALYCAAAG---CDARQARLCLYILELSLLDYTLVHTYVPSLRAAAAAFLARATMCTSAAAAAGAAWPPTAARFSGYGAAQLEACARRMHALHEGAEDALLRAVREKHARPGALRVAAL 840
            QC+  HYV   + Y++EL+L       +M  Q ++ A  RS +VDWLVEV   Y+L   TL+L V  +DR L  +   R  LQ +   C+L+A+K+EE   P+      ISDN + R  +L  E  +L  L+F +S AT   +   +  AA    CD    +LC Y+ EL+L +Y+ +  Y PS  AAAA  LA  TM   +       W P     SGY + +L+ C   M +L   AE   L+AVREK++    L V+ L
Sbjct:  103 QCH--HYVVDIFSYLRELELEHRVSPHFMQGQRDINATMRSILVDWLVEVAEEYRLVPETLYLAVNYIDRFLAHVPVNRSKLQLVGVTCMLIASKYEEIHPPAVDEFVYISDNTYKREEILHMEGMILNRLKFELSAATVKVFLNRFLKAAKVGECDQTTEKLCEYLCELTLQEYSFIK-YRPSEIAAAALRLALHTMRLPS-------WSPLLQDVSGYPSEKLQNCVAEMFSLFRKAESNNLQAVREKYSHAKFLCVSTL 354
[Close]
BLAST of jgi.p|Trimin1|162345 vs. uniprot
Match: A0A388KYU4_CHABU (Uncharacterized protein n=2 Tax=Chara braunii TaxID=69332 RepID=A0A388KYU4_CHABU)

HSP 1 Score: 113 bits (282), Expect = 2.200e-24
Identity = 80/226 (35.40%), Postives = 123/226 (54.42%), Query Frame = 1 
Query:  139 ADYMHRQPNVGANSRSTVVDWLVEVCGSYKLGASTLFLCVELLDRSLTALCTARCDLQRLACACLLLAAKHEEEQAPSSSALACISDNAFSRAGVLRTEAQVLVALEFRVSCATPYQYAALYCAAAGCDARQARLCLYILELSLLDYTLVHTYVPSLRAAAAAFLARATMCTSAAAAAGAAWPPTAARFSGYGAAQLEACARRMHALHEGAEDALLRAVREKHARP 816
            ADYM  Q ++    R+ ++DWLVEV   +KL   TL+L   L+DR L    T R +LQ +    +L+A+K+EE  AP       ISD A+++A +L  E ++L  L F ++  TPY +   +  AA  D +   L  +++EL+L++Y++V  ++PS  AAAA + A   +   +A      W PT  R SGY    L+ CA  M   H+ A    L AV +K++ P
Sbjct:  219 ADYMTSQDDINEKMRAILLDWLVEVHFKFKLLPETLYLTANLIDRYLAKKPTERKNLQLVGITAMLIASKYEEIWAPEVRDFVYISDKAYTKAAILDMEKKMLNTLNFNLTVPTPYVFMVRFLKAAEADKKLEHLAFFLVELALVEYSMVR-FLPSQLAAAAVYTAMRILGLLSAG-----WTPTLRRHSGYTEEALKPCASLMARFHKNASSTTLVAVHKKYSGP 438
[Close]
BLAST of jgi.p|Trimin1|162345 vs. uniprot
Match: A0A7R9GG16_9CRUS (Hypothetical protein n=1 Tax=Notodromas monacha TaxID=399045 RepID=A0A7R9GG16_9CRUS)

HSP 1 Score: 113 bits (283), Expect = 3.280e-24
Identity = 86/269 (31.97%), Postives = 140/269 (52.04%), Query Frame = 1 
Query:   37 VTVGDEHDLNVAFLQCYGQHYVAWLYVQELQLRPAD-YMHRQPNVGANSRSTVVDWLVEVCGSYKLGASTLFLCVELLDRSLTALCTARCDLQRLACACLLLAAKHEEEQAPSSSALACISDNAFSRAGVLRTEAQVLVALEFRVSCATPYQYAALYCAAAGCDARQARLCLYILELSLLDYTLVHTYVPSLRAAAAAFLARATMCTSAAAAAGAAWPPTAARFSGYGAAQLEACARRMHALHEGAEDALLRAVREKHARPGALRVAAL 840
            V++  + + ++  L+ Y +    +L  QE   RP   YMH+QP++  + RS +VDWLVEV   YKL  + LF+ V  +DR L+     R  LQ L    + +AAK EE   P S     I+DN +S+  +L+ E  +L+AL++R++C TPY + A +          + L LY+LEL++++   +  Y+PS++AAA+  LA  T+        G  W     + + Y  A L  C   +  +   A     +AVR+K+  P    VA++
Sbjct:  295 VSLHKQQEDDMCKLKEYAEDIFKYLAEQEKNFRPRPMYMHQQPDLAPHMRSMLVDWLVEVAIEYKLSDACLFMAVSYIDRFLSYNKIFRSKLQLLGTTAMFIAAKVEEIYPPESEEFVFITDNTYSKEQLLKMETFILIALDYRMTCVTPYTFFAKFVLDIEAPETVSNLALYLLELAMMEGGDILNYLPSVQAAASVALAAHTLMV------GELWKIMFMKTTNYKYADLMPCMSTIKIIWAKAATHDQQAVRQKYLEPKVKAVASI 557
[Close]
BLAST of jgi.p|Trimin1|162345 vs. uniprot
Match: A0A4P1RRJ3_LUPAN (B-like cyclin n=3 Tax=Lupinus TaxID=3869 RepID=A0A4P1RRJ3_LUPAN)

HSP 1 Score: 111 bits (277), Expect = 5.280e-24
Identity = 79/225 (35.11%), Postives = 122/225 (54.22%), Query Frame = 1 
Query:  133 RPADYMHRQPNVGANSRSTVVDWLVEVCGSYKLGASTLFLCVELLDRSLTALCTARCDLQRLACACLLLAAKHEEEQAPSSSALACISDNAFSRAGVLRTEAQVLVALEFRVSCATPYQYAALYC-AAAGCDARQARLCLYILELSLLDYTLVHTYVPSLRAAAAAFLARATMCTSAAAAAGAAWPPTAARFSGYGAAQLEACARRMHALHEGAEDALLRAVREK 804
            R  DYM  QP++    RS +VDWL+EV   ++L   TL+L + ++DR L+     R +LQ +  + +L+A K+EE  AP  +    I+DNA+ R  +L  E  +L  LE+ ++  TPY +   Y  A+   D     +  ++ ELSL+DY+ +  Y PSL AA+A + AR T+  S        W  T   ++GY   QL  C++ M   H  A ++ LRAV +K
Sbjct:  150 RVHDYMPSQPDINMKMRSILVDWLIEVHRKFELMPETLYLTLNIIDRFLSMKAVPRRELQLVGISSMLIACKYEEIWAPEVNDFVYIADNAYVREHILIMEKTILSKLEWYLTVPTPYVFLIRYIKASTPSDKEIENMVFFLAELSLMDYSAMINYCPSLIAASAVYAARCTLGRSPY------WTETLKHYTGYCEEQLRDCSKIMVNFHSAAPESKLRAVYKK 368
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|162345 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CJX2_9STRA8.560e-205100.00Cyclin-like protein n=1 Tax=Tribonema minus TaxID=... [more]
A0A835YJW4_9STRA1.180e-6550.94Cyclin-like protein n=1 Tax=Tribonema minus TaxID=... [more]
D7FS66_ECTSI2.450e-4541.37Putative cyclin A n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5L2E4_9PHAE8.370e-4241.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7T499_9STRA6.380e-2936.82Cyclin-like protein n=2 Tax=Monodopsidaceae TaxID=... [more]
A0A7S1AYF8_NOCSC9.510e-2735.02Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A7S4II30_9EUKA2.480e-2536.26Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A388KYU4_CHABU2.200e-2435.40Uncharacterized protein n=2 Tax=Chara braunii TaxI... [more]
A0A7R9GG16_9CRUS3.280e-2431.97Hypothetical protein n=1 Tax=Notodromas monacha Ta... [more]
A0A4P1RRJ3_LUPAN5.280e-2435.11B-like cyclin n=3 Tax=Lupinus TaxID=3869 RepID=A0A... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_20contigContig_20:1263027..1265264 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|162345|e_gw1.20.143.1
KEGG TC2.A.40.6
BRITEko00000,ko00001,ko00002,ko01000,ko02000,ko03009,ko03032,ko03036
KEGG ModuleM00693
KEGG Pathwayko03008,ko04110,ko04152,ko04218,ko04914,ko05161,ko05165,ko05169,ko05203,map03008,map04110,map04152,map04218,map04914,map05161,map05165,map05169,map05203
KEGG koko:K06627,ko:K14521,ko:K14611,ko:K21777
GOsGO:0000003,GO:0000070,GO:0000082,GO:0000083,GO:0000086,GO:0000278,GO:0000280,GO:0000307,GO:0000819,GO:0001932,GO:0001939,GO:0001940,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006325,GO:0006355,GO:0006464,GO:0006468,GO:0006508,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007088,GO:0007096,GO:0007127,GO:0007135,GO:0007140,GO:0007141,GO:0007154,GO:0007165,GO:0007264,GO:0007265,GO:0007275,GO:0007276,GO:0007283,GO:0007346,GO:0007399,GO:0007405,GO:0007422,GO:0008150,GO:0008152,GO:0008283,GO:0008284,GO:0008356,GO:0009058,GO:0009059,GO:0009555,GO:0009556,GO:0009653,GO:0009790,GO:0009791,GO:0009794,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010015,GO:0010101,GO:0010102,GO:0010311,GO:0010374,GO:0010389,GO:0010440,GO:0010444,GO:0010468,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010628,GO:0010639,GO:0010948,GO:0010965,GO:0015630,GO:0016043,GO:0016310,GO:0016538,GO:0016569,GO:0016570,GO:0016572,GO:0016579,GO:0017145,GO:0019207,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019887,GO:0019899,GO:0019900,GO:0019901,GO:0019904,GO:0019953,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022622,GO:0023052,GO:0030071,GO:0030154,GO:0030234,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031974,GO:0031981,GO:0032268,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033301,GO:0034293,GO:0034641,GO:0034645,GO:0035186,GO:0035556,GO:0035561,GO:0036211,GO:0036445,GO:0042023,GO:0042127,GO:0042325,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043549,GO:0043934,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044786,GO:0044839,GO:0044843,GO:0045120,GO:0045165,GO:0045170,GO:0045448,GO:0045786,GO:0045787,GO:0045839,GO:0045841,GO:0045859,GO:0045893,GO:0045930,GO:0045935,GO:0045995,GO:0046483,GO:0048103,GO:0048145,GO:0048146,GO:0048229,GO:0048232,GO:0048236,GO:0048285,GO:0048364,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048527,GO:0048528,GO:0048580,GO:0048582,GO:0048609,GO:0048646,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051098,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051174,GO:0051239,GO:0051240,GO:0051246,GO:0051252,GO:0051254,GO:0051276,GO:0051301,GO:0051321,GO:0051338,GO:0051445,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0055057,GO:0055059,GO:0060255,GO:0061351,GO:0061695,GO:0061982,GO:0061983,GO:0065007,GO:0065009,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0072089,GO:0080090,GO:0090068,GO:0090304,GO:0090558,GO:0090627,GO:0090696,GO:0090697,GO:0090698,GO:0097123,GO:0097124,GO:0098722,GO:0098772,GO:0098813,GO:0099402,GO:0140013,GO:0140014,GO:1901360,GO:1901564,GO:1901576,GO:1901987,GO:1901988,GO:1901989,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1902494,GO:1902554,GO:1902680,GO:1902749,GO:1902806,GO:1902808,GO:1902911,GO:1903046,GO:1903047,GO:1903506,GO:1903508,GO:1905392,GO:1905393,GO:1905818,GO:1905819,GO:1990234,GO:2000026,GO:2000038,GO:2000112,GO:2000123,GO:2000241,GO:2000816,GO:2001141,GO:2001251
Preferred nameCCNA2
Descriptioncell division
COG categoryD
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5024@1|root,KOG0654@2759|Eukaryota
Evalue4.02e-46
Seed ortholog2880.D7FS66
Hectar predicted targeting categoryother localisation
TranscriptId162667
TrackFilteredModels1
ProteinId162345
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|162345gene_4206Tribonema minus UTEX_B_3156 geneContig_20 1263027..1265264 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4206_1exon_4206_1Tribonema minus UTEX_B_3156 exonContig_20 1263027..1263532 +
exon_4206_2exon_4206_2Tribonema minus UTEX_B_3156 exonContig_20 1264757..1265264 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4206CDS_4206Tribonema minus UTEX_B_3156 CDSContig_20 1263027..1263532 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|162345Trimin1|162345|e_gw1.20.143.1Tribonema minus UTEX_B_3156 polypeptideContig_20 1263027..1265264 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4206 ID=mRNA_4206|Name=jgi.p|Trimin1|162345|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1014bp|location=Sequence derived from alignment at Contig_20:1263027..1265264+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCAGCAGGCACTGCAGAACTGCACCTTCTCTGTCACCGTAGGCGA
CGAGCACGACCTCAACGTAGCCTTTCTGCAGTGCTACGGCCAGCACTACG
TGGCCTGGCTCTACGTGCAAGAGCTGCAGCTCCGGCCGGCGGACTACATG
CACAGGCAGCCCAACGTCGGCGCCAACTCGCGCAGCACCGTCGTTGATTG
GCTCGTCGAGGTCTGTGGCAGTTACAAACTGGGCGCCAGCACCCTCTTCC
TGTGCGTGGAGCTGCTGGACCGCAGCCTCACTGCGCTGTGCACGGCGCGC
TGCGACTTGCAGCGGCTGGCGTGCGCGTGCCTGCTGCTGGCGGCCAAGCA
CGAAGAGGAGCAGGCGCCTTCCTCGAGCGCGCTCGCGTGCATCAGCGATA
ACGCGTTTTCGCGGGCGGGAGTGCTGCGGACGGAGGCGCAGGTGCTGGTG
GCGCTGGAATTCAGGGTGTCGTGCGCGACGCCGTATCAGTATGCGGCGCT
GTACTGCGCCGCCGCCGGCTGCGACGCGCGCCAAGCCCGCCTCTGCCTCT
ACATCCTGGAGCTGTCGCTGCTGGACTACACGCTGGTGCATACCTACGTA
CCCTCGCTGCGCGCTGCCGCCGCCGCCTTCCTGGCGCGCGCCACCATGTG
CACGAGCGCGGCGGCGGCGGCGGGCGCGGCGTGGCCGCCCACGGCCGCGC
GCTTCTCGGGCTACGGCGCTGCGCAGCTGGAGGCGTGCGCGCGGCGCATG
CACGCGCTGCACGAGGGCGCGGAGGACGCGCTGCTGCGCGCCGTGCGCGA
GAAGCACGCGCGCCCCGGCGCGCTGCGCGTGGCGGCGCTGTGCTGCGCGT
CGGACGCGCACCTGCGCTGCGCCCTGCGGGGGAGCGCTGACGCCGCGGCT
GCTGCTGCTGCTGCGGCGGCGAAGGCGGCGGCGCCGGCGCCGGCAGTGGC
GGTAGCGGCAGCGGCGACGGCAGCGGCGACGGCGATGACGATGGCCACGC
GCCTGCAGCAGTGA
back to top

protein sequence of jgi.p|Trimin1|162345

>Trimin1|162345|e_gw1.20.143.1 ID=Trimin1|162345|e_gw1.20.143.1|Name=jgi.p|Trimin1|162345|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=338bp
MLQQALQNCTFSVTVGDEHDLNVAFLQCYGQHYVAWLYVQELQLRPADYM
HRQPNVGANSRSTVVDWLVEVCGSYKLGASTLFLCVELLDRSLTALCTAR
CDLQRLACACLLLAAKHEEEQAPSSSALACISDNAFSRAGVLRTEAQVLV
ALEFRVSCATPYQYAALYCAAAGCDARQARLCLYILELSLLDYTLVHTYV
PSLRAAAAAFLARATMCTSAAAAAGAAWPPTAARFSGYGAAQLEACARRM
HALHEGAEDALLRAVREKHARPGALRVAALCCASDAHLRCALRGSADAAA
AAAAAAAKAAAPAPAVAVAAAATAAATAMTMATRLQQ*
back to top

mRNA from alignment at Contig_20:1263027..1265264+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4206 ID=mRNA_4206|Name=jgi.p|Trimin1|162345|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2238bp|location=Sequence derived from alignment at Contig_20:1263027..1265264+ (Tribonema minus UTEX_B_3156 )
ATGCTGCAGCAGGCACTGCAGAACTGCACCTTCTCTGTCACCGTAGGCGA
CGAGCACGACCTCAACGTAGCCTTTCTGCAGTGCTACGGCCAGCACTACG
TGGCCTGGCTCTACGTGCAAGAGCTGCAGCTCCGGCCGGCGGACTACATG
CACAGGCAGCCCAACGTCGGCGCCAACTCGCGCAGCACCGTCGTTGATTG
GCTCGTCGAGGTCTGTGGCAGTTACAAACTGGGCGCCAGCACCCTCTTCC
TGTGCGTGGAGCTGCTGGACCGCAGCCTCACTGCGCTGTGCACGGCGCGC
TGCGACTTGCAGCGGCTGGCGTGCGCGTGCCTGCTGCTGGCGGCCAAGCA
CGAAGAGGAGCAGGCGCCTTCCTCGAGCGCGCTCGCGTGCATCAGCGATA
ACGCGTTTTCGCGGGCGGGAGTGCTGCGGACGGAGGCGCAGGTGCTGGTG
GCGCTGGAATTCAGGGTGTCGTGCGCGACGCCGTATCAGTATGCGGCGCT
GTACTGGTGAGTGACCGCGTATGAACTTGCAGTTGCTTTTGTTGCTATGT
ACGTTTGGTGTAGTGTTGTAGCACGAGGATGCACTGGCAAGACGATAAGA
AGCGTTGACATGTTTTTGCCGTAGCATAAGGCATTGCTGCTGTGGCACCA
AATAGCCTTGGTTAGTATTGTATACACAGCCTACCATCGGGCTATACAAG
AGCTTCCCAAAAACAATGAAATGATGACTATTTTAGAGTTACCTGTGCCA
GCTATCAAGGTTAAACCCTTAGTTCTCCTTGTCTATAAGGGAGGGTTGAG
CGCACTTTGGGTTTAAGGTAAGGGTTAGGGCTACAGCGCAGCACACTCGT
CAATTAAACAGATGTCACGAGTCATGCACAATCACGATGCACAGCCCCAA
AGGAAGTGCTTGTTGTGCGCTTCGCGCGTTCTTCAAGCTCACATGGGGAA
AATTCAGAAGTACTTTGTATGTGAGATGTGTGCTACAGTGTCACCTGGAG
TCTACACATCTTGCAGTTGTGCTGCTCTGATTACAGCTGCAGCTTCCAAC
GCTGTTGTGCATTAGGAACAGCATAGCCACAAAGTTTTCAAGGTTTACCG
CTGCAAGTATGTGACCCAACTGCATGTGCCAGCTGTACTGTAGCTGCTTT
ATGTTCAACAGGGTAAACGCAGATCAATTACTGCGCATTTGCAGCGGATC
ATACCCGGTGCTGATGTGCTAGGTAGCAGTCGTTTGTAAGCGTCAAGGCA
TCATGTGTTTGCACGTCGAACACCGGTTACGACCAGCCCGTCGGCTCAAG
TTGTTGAGTTCTATGAGATGTCATCAGCTCAACAAGTGTGCATAGGCTTT
CTGCCCTTTGAAACCTGGATGGGGTTCAACAAAGTAATTCGAATAGAGCA
CTGTGCAAGCACATTGACCGTACGGCAGGGCTACAGCATTTGCAGTGATG
CATATTGACGATAAATAGATGTGCAGACCCAGATGATTATTTGCTGGAGA
GCACTGCATCGCAAGGGAATTCCAAGGCAATAATAAAGCTTTGGATGAAC
AAGTGAATGCCATGGCAGGTTGCGCTATAGATATGTGTAAGAGTACCTGC
TGCCTGTGCGCCGTCGGAAGCTGCAGTCAATTGACGCCCGAGTTACTGCC
GCAGCATCACTAGCAACTGTCAACAGAACGCCACGCGCAACAGGCATGTG
ACACAACCTCTCCAACGCCGCTGCTCGCAGCGCCGCCGCCGGCTGCGACG
CGCGCCAAGCCCGCCTCTGCCTCTACATCCTGGAGCTGTCGCTGCTGGAC
TACACGCTGGTGCATACCTACGTACCCTCGCTGCGCGCTGCCGCCGCCGC
CTTCCTGGCGCGCGCCACCATGTGCACGAGCGCGGCGGCGGCGGCGGGCG
CGGCGTGGCCGCCCACGGCCGCGCGCTTCTCGGGCTACGGCGCTGCGCAG
CTGGAGGCGTGCGCGCGGCGCATGCACGCGCTGCACGAGGGCGCGGAGGA
CGCGCTGCTGCGCGCCGTGCGCGAGAAGCACGCGCGCCCCGGCGCGCTGC
GCGTGGCGGCGCTGTGCTGCGCGTCGGACGCGCACCTGCGCTGCGCCCTG
CGGGGGAGCGCTGACGCCGCGGCTGCTGCTGCTGCTGCGGCGGCGAAGGC
GGCGGCGCCGGCGCCGGCAGTGGCGGTAGCGGCAGCGGCGACGGCAGCGG
CGACGGCGATGACGATGGCCACGCGCCTGCAGCAGTGA
back to top

Coding sequence (CDS) from alignment at Contig_20:1263027..1265264+

>mRNA_4206 ID=mRNA_4206|Name=jgi.p|Trimin1|162345|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1014bp|location=Sequence derived from alignment at Contig_20:1263027..1265264+ (Tribonema minus UTEX_B_3156 )
ATGCTGCAGCAGGCACTGCAGAACTGCACCTTCTCTGTCACCGTAGGCGA
CGAGCACGACCTCAACGTAGCCTTTCTGCAGTGCTACGGCCAGCACTACG
TGGCCTGGCTCTACGTGCAAGAGCTGCAGCTCCGGCCGGCGGACTACATG
CACAGGCAGCCCAACGTCGGCGCCAACTCGCGCAGCACCGTCGTTGATTG
GCTCGTCGAGGTCTGTGGCAGTTACAAACTGGGCGCCAGCACCCTCTTCC
TGTGCGTGGAGCTGCTGGACCGCAGCCTCACTGCGCTGTGCACGGCGCGC
TGCGACTTGCAGCGGCTGGCGTGCGCGTGCCTGCTGCTGGCGGCCAAGCA
CGAAGAGGAGCAGGCGCCTTCCTCGAGCGCGCTCGCGTGCATCAGCGATA
ACGCGTTTTCGCGGGCGGGAGTGCTGCGGACGGAGGCGCAGGTGCTGGTG
GCGCTGGAATTCAGGGTGTCGTGCGCGACGCCGTATCAGTATGCGGCGCT
GTACTGCGCCGCCGCCGGCTGCGACGCGCGCCAAGCCCGCCTCTGCCTCT
ACATCCTGGAGCTGTCGCTGCTGGACTACACGCTGGTGCATACCTACGTA
CCCTCGCTGCGCGCTGCCGCCGCCGCCTTCCTGGCGCGCGCCACCATGTG
CACGAGCGCGGCGGCGGCGGCGGGCGCGGCGTGGCCGCCCACGGCCGCGC
GCTTCTCGGGCTACGGCGCTGCGCAGCTGGAGGCGTGCGCGCGGCGCATG
CACGCGCTGCACGAGGGCGCGGAGGACGCGCTGCTGCGCGCCGTGCGCGA
GAAGCACGCGCGCCCCGGCGCGCTGCGCGTGGCGGCGCTGTGCTGCGCGT
CGGACGCGCACCTGCGCTGCGCCCTGCGGGGGAGCGCTGACGCCGCGGCT
GCTGCTGCTGCTGCGGCGGCGAAGGCGGCGGCGCCGGCGCCGGCAGTGGC
GGTAGCGGCAGCGGCGACGGCAGCGGCGACGGCGATGACGATGGCCACGC
GCCTGCAGCAGTGA
back to top