mRNA_4196 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|149278
Unique NamemRNA_4196
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|149278 vs. uniprot
Match: A0A835Z3J5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3J5_9STRA)

HSP 1 Score: 471 bits (1213), Expect = 2.110e-167
Identity = 257/257 (100.00%), Postives = 257/257 (100.00%), Query Frame = 1 
Query:    1 MIRLRSVGRLPCPDGKVGSHSWVLDLPRSGSVVIFNSKHACQRDAFTGAALAEGPVPVPPTDSSLFAEGAAAAAPLDDFDIDAKSAACVVQGATGPLMVVFSPHYCALGVLHLPSGTIRDLLPLRLTSRGPGRSSLSLVTCITGSRHRGSAGIVFIGRAGQPTVQAVRVDPPELVGSTGTSLHSNGCVIAAACHPSKALLALSLSNGIIQLWDFSALCTDAQGSAADIGXXXXXXXXXXXXXXXXXDMDIASPTSSP 771
            MIRLRSVGRLPCPDGKVGSHSWVLDLPRSGSVVIFNSKHACQRDAFTGAALAEGPVPVPPTDSSLFAEGAAAAAPLDDFDIDAKSAACVVQGATGPLMVVFSPHYCALGVLHLPSGTIRDLLPLRLTSRGPGRSSLSLVTCITGSRHRGSAGIVFIGRAGQPTVQAVRVDPPELVGSTGTSLHSNGCVIAAACHPSKALLALSLSNGIIQLWDFSALCTDAQGSAADIGXXXXXXXXXXXXXXXXXDMDIASPTSSP
Sbjct:    1 MIRLRSVGRLPCPDGKVGSHSWVLDLPRSGSVVIFNSKHACQRDAFTGAALAEGPVPVPPTDSSLFAEGAAAAAPLDDFDIDAKSAACVVQGATGPLMVVFSPHYCALGVLHLPSGTIRDLLPLRLTSRGPGRSSLSLVTCITGSRHRGSAGIVFIGRAGQPTVQAVRVDPPELVGSTGTSLHSNGCVIAAACHPSKALLALSLSNGIIQLWDFSALCTDAQGSAADIGXXXXXXXXXXXXXXXXXDMDIASPTSSP 257
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|149278 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z3J5_9STRA2.110e-167100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_20contigContig_20:1217467..1218237 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|149278|gw1.20.195.1
Hectar predicted targeting categoryother localisation
TranscriptId149600
TrackFilteredModels1
ProteinId149278
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|149278gene_4196Tribonema minus UTEX_B_3156 geneContig_20 1217467..1218237 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4196_1exon_4196_1Tribonema minus UTEX_B_3156 exonContig_20 1217467..1218237 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4196CDS_4196Tribonema minus UTEX_B_3156 CDSContig_20 1217467..1218237 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|149278Trimin1|149278|gw1.20.195.1Tribonema minus UTEX_B_3156 polypeptideContig_20 1217467..1218237 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4196 ID=mRNA_4196|Name=jgi.p|Trimin1|149278|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=771bp|location=Sequence derived from alignment at Contig_20:1217467..1218237- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGATACGACTGAGATCAGTCGGCAGACTGCCTTGTCCGGACGGCAAGGT
TGGCAGCCATAGCTGGGTCCTGGACTTGCCAAGGAGCGGCTCTGTTGTGA
TCTTCAACTCCAAGCACGCCTGCCAGAGAGATGCCTTCACAGGAGCAGCC
CTGGCGGAAGGCCCAGTGCCGGTGCCGCCGACAGACTCTTCTCTCTTCGC
TGAAGGAGCAGCAGCAGCAGCGCCTCTGGACGACTTTGACATTGACGCAA
AGTCGGCTGCCTGTGTTGTGCAGGGAGCGACGGGCCCGTTGATGGTCGTC
TTTTCCCCACATTATTGCGCTCTTGGAGTGCTGCACCTCCCCTCTGGCAC
CATAAGAGATCTGCTGCCGCTGCGTCTCACCAGCCGCGGCCCCGGCCGCA
GCAGCCTCAGTCTGGTGACGTGCATCACGGGCTCACGGCATCGAGGAAGC
GCAGGCATTGTGTTTATAGGGCGTGCCGGGCAGCCAACAGTGCAGGCAGT
TCGGGTGGACCCCCCTGAACTGGTGGGGTCAACTGGCACAAGCCTGCACT
CCAACGGGTGCGTAATAGCGGCGGCGTGTCACCCCAGCAAGGCGCTGCTG
GCCCTCTCCCTCAGCAACGGCATCATTCAGCTATGGGACTTCTCAGCGCT
GTGCACCGACGCACAGGGCTCAGCTGCAGACATTGGAGGCGGTGGAGGGG
GCGCAGCAGCAAGTGTTGGCGGCGGTGGCGGCGGCGGGGACATGGACATT
GCCTCGCCGACTTCGTCGCCA
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protein sequence of jgi.p|Trimin1|149278

>Trimin1|149278|gw1.20.195.1 ID=Trimin1|149278|gw1.20.195.1|Name=jgi.p|Trimin1|149278|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=257bp
MIRLRSVGRLPCPDGKVGSHSWVLDLPRSGSVVIFNSKHACQRDAFTGAA
LAEGPVPVPPTDSSLFAEGAAAAAPLDDFDIDAKSAACVVQGATGPLMVV
FSPHYCALGVLHLPSGTIRDLLPLRLTSRGPGRSSLSLVTCITGSRHRGS
AGIVFIGRAGQPTVQAVRVDPPELVGSTGTSLHSNGCVIAAACHPSKALL
ALSLSNGIIQLWDFSALCTDAQGSAADIGGGGGGAAASVGGGGGGGDMDI
ASPTSSP
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mRNA from alignment at Contig_20:1217467..1218237-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4196 ID=mRNA_4196|Name=jgi.p|Trimin1|149278|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=771bp|location=Sequence derived from alignment at Contig_20:1217467..1218237- (Tribonema minus UTEX_B_3156 )
ATGATACGACTGAGATCAGTCGGCAGACTGCCTTGTCCGGACGGCAAGGT
TGGCAGCCATAGCTGGGTCCTGGACTTGCCAAGGAGCGGCTCTGTTGTGA
TCTTCAACTCCAAGCACGCCTGCCAGAGAGATGCCTTCACAGGAGCAGCC
CTGGCGGAAGGCCCAGTGCCGGTGCCGCCGACAGACTCTTCTCTCTTCGC
TGAAGGAGCAGCAGCAGCAGCGCCTCTGGACGACTTTGACATTGACGCAA
AGTCGGCTGCCTGTGTTGTGCAGGGAGCGACGGGCCCGTTGATGGTCGTC
TTTTCCCCACATTATTGCGCTCTTGGAGTGCTGCACCTCCCCTCTGGCAC
CATAAGAGATCTGCTGCCGCTGCGTCTCACCAGCCGCGGCCCCGGCCGCA
GCAGCCTCAGTCTGGTGACGTGCATCACGGGCTCACGGCATCGAGGAAGC
GCAGGCATTGTGTTTATAGGGCGTGCCGGGCAGCCAACAGTGCAGGCAGT
TCGGGTGGACCCCCCTGAACTGGTGGGGTCAACTGGCACAAGCCTGCACT
CCAACGGGTGCGTAATAGCGGCGGCGTGTCACCCCAGCAAGGCGCTGCTG
GCCCTCTCCCTCAGCAACGGCATCATTCAGCTATGGGACTTCTCAGCGCT
GTGCACCGACGCACAGGGCTCAGCTGCAGACATTGGAGGCGGTGGAGGGG
GCGCAGCAGCAAGTGTTGGCGGCGGTGGCGGCGGCGGGGACATGGACATT
GCCTCGCCGACTTCGTCGCCA
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Coding sequence (CDS) from alignment at Contig_20:1217467..1218237-

>mRNA_4196 ID=mRNA_4196|Name=jgi.p|Trimin1|149278|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=771bp|location=Sequence derived from alignment at Contig_20:1217467..1218237- (Tribonema minus UTEX_B_3156 )
ATGATACGACTGAGATCAGTCGGCAGACTGCCTTGTCCGGACGGCAAGGT
TGGCAGCCATAGCTGGGTCCTGGACTTGCCAAGGAGCGGCTCTGTTGTGA
TCTTCAACTCCAAGCACGCCTGCCAGAGAGATGCCTTCACAGGAGCAGCC
CTGGCGGAAGGCCCAGTGCCGGTGCCGCCGACAGACTCTTCTCTCTTCGC
TGAAGGAGCAGCAGCAGCAGCGCCTCTGGACGACTTTGACATTGACGCAA
AGTCGGCTGCCTGTGTTGTGCAGGGAGCGACGGGCCCGTTGATGGTCGTC
TTTTCCCCACATTATTGCGCTCTTGGAGTGCTGCACCTCCCCTCTGGCAC
CATAAGAGATCTGCTGCCGCTGCGTCTCACCAGCCGCGGCCCCGGCCGCA
GCAGCCTCAGTCTGGTGACGTGCATCACGGGCTCACGGCATCGAGGAAGC
GCAGGCATTGTGTTTATAGGGCGTGCCGGGCAGCCAACAGTGCAGGCAGT
TCGGGTGGACCCCCCTGAACTGGTGGGGTCAACTGGCACAAGCCTGCACT
CCAACGGGTGCGTAATAGCGGCGGCGTGTCACCCCAGCAAGGCGCTGCTG
GCCCTCTCCCTCAGCAACGGCATCATTCAGCTATGGGACTTCTCAGCGCT
GTGCACCGACGCACAGGGCTCAGCTGCAGACATTGGAGGCGGTGGAGGGG
GCGCAGCAGCAAGTGTTGGCGGCGGTGGCGGCGGCGGGGACATGGACATT
GCCTCGCCGACTTCGTCGCCA
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