mRNA_4193 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348193
Unique NamemRNA_4193
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|348193 vs. uniprot
Match: A0A835Z4A7_9STRA (tRNA/rRNA methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4A7_9STRA)

HSP 1 Score: 546 bits (1406), Expect = 1.440e-195
Identity = 285/285 (100.00%), Postives = 285/285 (100.00%), Query Frame = 1
Query:    1 MRSTEAFELWRPPGSGDLLDITSPTNPRIKTLHKRKSRDSEGRVLVEGCRLVTDALKAGLSPDLVLVSPEALASPGGSALSALLQRLSSDVVCLASGDCVARACDTVSPQGVVAVVARPLLPLPETVRLALVLDGVSDPGNMGTMVRTAAALGVDAVVMTGACVDLWSPKALRASMGAAFRVPSVATGTWRETRELLQARGLALYAADGGAATAHWEVPWSKPSALVVGSEAEGLSQAAREDLDRGVITGIRIPLSNGVESLNAAVAGAIVLGEAQRQRQHGVNT 855
            MRSTEAFELWRPPGSGDLLDITSPTNPRIKTLHKRKSRDSEGRVLVEGCRLVTDALKAGLSPDLVLVSPEALASPGGSALSALLQRLSSDVVCLASGDCVARACDTVSPQGVVAVVARPLLPLPETVRLALVLDGVSDPGNMGTMVRTAAALGVDAVVMTGACVDLWSPKALRASMGAAFRVPSVATGTWRETRELLQARGLALYAADGGAATAHWEVPWSKPSALVVGSEAEGLSQAAREDLDRGVITGIRIPLSNGVESLNAAVAGAIVLGEAQRQRQHGVNT
Sbjct:    1 MRSTEAFELWRPPGSGDLLDITSPTNPRIKTLHKRKSRDSEGRVLVEGCRLVTDALKAGLSPDLVLVSPEALASPGGSALSALLQRLSSDVVCLASGDCVARACDTVSPQGVVAVVARPLLPLPETVRLALVLDGVSDPGNMGTMVRTAAALGVDAVVMTGACVDLWSPKALRASMGAAFRVPSVATGTWRETRELLQARGLALYAADGGAATAHWEVPWSKPSALVVGSEAEGLSQAAREDLDRGVITGIRIPLSNGVESLNAAVAGAIVLGEAQRQRQHGVNT 285          
BLAST of jgi.p|Trimin1|348193 vs. uniprot
Match: A0A6H5L4S8_9PHAE (SpoU_sub_bind domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4S8_9PHAE)

HSP 1 Score: 302 bits (774), Expect = 1.800e-98
Identity = 159/280 (56.79%), Postives = 208/280 (74.29%), Query Frame = 1
Query:    7 STEAFELWRPPGSGDLLDITSPTNPRIKTL---HKRKSRDSEGRVLVEGCRLVTDALKAGLSPDLVLVSPEALASPGGSALSALLQRLSSDVVCLASGDCVARACDTVSPQGVVAVVARPLLPLPETVRLALVLDGVSDPGNMGTMVRTAAALGVDAVVMTGACVDLWSPKALRASMGAAFRVPSVATGTWRETRELLQARGLALYAADGGAATAHWEVPWSKPSALVVGSEAEGLSQAAREDLDRGVITGIRIPLSNGVESLNAAVAGAIVLGEAQRQR 837
            S+  + LWR    G  LDITS  NP++K +   HKR++RD  G++L EG RLV D ++ GL+P LV+    AL +  G  L A L+ LS+DVV +A  + V R CDTV+ QGVVA+V RP+LPLP T++  L+ DG+ DPGN+GT+VRTAA LG DAVV+TG+CVD W+PK +RASMGA+FR+PS+   +W+E  EL++ARG+ +YAADGGA  +H++  W+ PSALVVG+EA GLS AAR +L+ G I G+ +PL  GVESLNAAVAGAIVLGEAQRQR
Sbjct:   52 SSLPYGLWR--DRGGTLDITSARNPKVKLMRSFHKRRTRDDGGKILAEGHRLVCDLIEGGLTPTLVI----ALRASPGPRLQAALETLSADVVAVAPAEVVQRCCDTVTSQGVVALVERPVLPLPPTMQTVLICDGIQDPGNLGTLVRTAAGLGADAVVLTGSCVDYWAPKTVRASMGASFRLPSLRLESWQEVVELMRARGIRMYAADGGARLSHFDADWTSPSALVVGAEARGLSDAARLELESGGIAGVSVPLEGGVESLNAAVAGAIVLGEAQRQR 325          
BLAST of jgi.p|Trimin1|348193 vs. uniprot
Match: A0A8J5X903_DIALT (SpoU_sub_bind domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X903_DIALT)

HSP 1 Score: 222 bits (565), Expect = 7.870e-68
Identity = 132/266 (49.62%), Postives = 169/266 (63.53%), Query Frame = 1
Query:   61 ITSPTNPRIKTLHK---RKSRDSEGRVLVEGCRLVTDALKAGLSPDLVLVSPEALASPGGSALSALLQRLSSDVVCLASGDCVARACDTVSPQGVVAVVARPLLP--LPETVRLALVLDGVSDPGNMGTMVRTAAALGVDAVVMTGACVDLWSPKALRASMGAAFRVPSVATGTWRETRELLQARGLALYAADGGAATAHWE-VPWSKPSALVVGSEAEGLSQAAREDLDRGVITGIRIPLSNGVESLNAAVAGAIVLGEAQRQRQ 840
            ITS  NP +K L +   R+ R+ +G +L+EG RLVTDAL AG   + VLV+   LA   G  L  +L  L + VV LA    +A AC TVSPQG+VA V  P     LP+   L LVLD +SDPGN+GT+VR AA  G DAVV  GAC D WSPKALR++MG  FR+P V    W + R  LQ  GL + AADGG A + +  V W  P A+V+GSEA GLS+A R DL  G +  + IP++ G++SLNAA+AG ++L E  RQR+
Sbjct:   15 ITSGKNPVVKALRRLESRRHRERDGLLLLEGLRLVTDALDAGFCAETVLVAEALLAQQPG--LQRVLAALPAGVVSLADEAALAAACTTVSPQGIVAAVRMPERTGALPDAASLVLVLDNLSDPGNVGTLVRGAAGFGCDAVVALGACADAWSPKALRSAMGGTFRLPIVPAQEWAQLRAQLQRAGLRVLAADGGVAASDYAAVDWRAPLAVVIGSEATGLSEAVRADLAAGSVCAVGIPMAAGLDSLNAAMAGTVLLSECARQRR 278          
BLAST of jgi.p|Trimin1|348193 vs. uniprot
Match: A0A7S0LQQ5_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LQQ5_9EUKA)

HSP 1 Score: 209 bits (533), Expect = 7.130e-63
Identity = 121/264 (45.83%), Postives = 172/264 (65.15%), Query Frame = 1
Query:   61 ITSPTNPRIKTLHK---RKSRDSEGRVLVEGCRLVTDALKAGLSPDLVLVSPEALASPGGSALSALLQR-LSSDVVCLASGDCVARACDTVSPQGVVAVVARPLLPLPETVRLALVLDGVSDPGNMGTMVRTAAALGVDAVVMTGACVDLWSPKALRASMGAAFRVPSVATGTWRETRELLQARGLALYAADGGAATAHWEVPWSKPSALVVGSEAEGLSQAAREDLDRGVITGIRIPLSNGVESLNAAVAGAIVLGEAQRQRQ 840
            ++S +NPRIK L K   +++RD  G +++EG RL+TDAL AG S D VL+S EAL +P G+ L+  L+  L ++ + +A    +A   DT +PQGVV ++ +P L LPE+    LVLD +SDPGN+GT++R+AA  GV++ ++   C D W  KALRA MGA  R+P V    + E   +L+  G    AAD    T +W V W +PSALVVGSEA GL++    D+D  +    RIPL+NGVESLNAA+AG++++ E  RQR+
Sbjct:   33 LSSTSNPRIKLLRKLQAKRARDKSGLMILEGHRLLTDALDAGYSADFVLLSEEALHAPEGARLARSLREVLRAEQLAIAPQSLIAELSDTQTPQGVVGMLQQPRLALPESPSFVLVLDRISDPGNLGTLLRSAAGAGVESALLLSGCTDPWGLKALRAGMGAQLRLPLVEVRGYAEAAGMLRRWGCHGVAADARGETDYWAVDWRQPSALVVGSEAHGLAEEVLSDVDTQLC---RIPLANGVESLNAAIAGSVMMYEVGRQRR 293          
BLAST of jgi.p|Trimin1|348193 vs. uniprot
Match: R1BHS4_EMIHU (RNA methyltransferase n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BHS4_EMIHU)

HSP 1 Score: 207 bits (527), Expect = 1.920e-62
Identity = 122/265 (46.04%), Postives = 157/265 (59.25%), Query Frame = 1
Query:   61 ITSPTNPRIKT---LHKRKSRDSEGRVLVEGCRLVTDALKAGLSPDLVLVSPEALASPGGSALSALLQRLSSDVVCLASGDCVARACDTVSPQGVVAVVARPLLPLPETVRLALVLDGVSDPGNMGTMVRTAAALGVDAVVMTGACVDLWSPKALRASMGAAFRVPSVATGTWRETRELLQARGLALYAADGGAATAHWEVPWSKPSALVVGSEAEGLSQAAREDLDRGVITGIRIPLSNGVESLNAAVAGAIVLGEAQRQRQHG 846
            + SP NPR+K    LH R+ R+  G +L+EG RL+ DAL AGLS D VLVS E L      AL  LL R+ +++    +        DT +P GV+A+  +P+L LP +  L LV D +SDPGN+GT++R +AA GVD  ++   C D W PKALRA MGA FRVP +   +W      L   G A+ AAD G  +AH++  W   SALVVGSEA G+S+    D           P +  +ESLNAAVAGAIVL EAQRQR  G
Sbjct:    6 LNSPNNPRLKLAKRLHARRQREKTGLILLEGQRLIADALDAGLSADFVLVSDEQLRD---GALDRLLARVPAEIAASTTAPLFRDVSDTTTPAGVLALFQKPILTLPPSPSLVLVCDSISDPGNLGTLLRASAAAGVDGCLLMAGCADPWGPKALRAGMGAQFRVPMMQVDSWAGAAASLVEWGCAIRAADAGGTSAHYDCDWRDASALVVGSEAHGISREVLAD-----------PRAGDLESLNAAVAGAIVLHEAQRQRMTG 256          
BLAST of jgi.p|Trimin1|348193 vs. uniprot
Match: A0A540V9T9_9CHLR (RNA methyltransferase n=1 Tax=Litorilinea aerophila TaxID=1204385 RepID=A0A540V9T9_9CHLR)

HSP 1 Score: 202 bits (514), Expect = 1.840e-60
Identity = 128/267 (47.94%), Postives = 168/267 (62.92%), Query Frame = 1
Query:   61 ITSPTNPRIKT---LHKRKSRDSEGRVLVEGCRLVTDALKAGLSPDLVLVSPEALASPGGSALSALLQRLSSD-VVCLA-SGDCVARACDTVSPQGVVAVVARPLLPLPETVRLALVLDGVSDPGNMGTMVRTAAALGVDAVVMTGACVDLWSPKALRASMGAAFRVPSVATGTWRETRELLQARGLALYAADGGAATAHWEVPWSKPSALVVGSEAEGLSQAAREDLDRGVITGIRIPLSNGVESLNAAVAGAIVLGEAQRQRQHG 846
            ITS +NPRIK    LH+R+ R   GR+L+EG RLV DA +AG+ P++VL  PEA+A  G    + LLQ+L    V CLA S +  A   DTV+PQG++AVV  P  PLP    L L+LD V DPGN GT++RTA A GVD V++    VD ++ K +RA MGA FR+P     +W +  + L    + LY A+  A T + +V W +P+ALV+G EA G S AAR+         I IP+   VESLNAAVAGA++L EA RQR+HG
Sbjct:    2 ITSTSNPRIKEIRKLHRRRHRHESGRILLEGVRLVEDATQAGVRPEMVLYVPEAVA--GQERAARLLQQLQEQGVECLACSPEVFASVSDTVTPQGILAVVPLPHRPLPSQPTLVLILDQVRDPGNAGTLLRTAEAAGVDLVLLAPGTVDPFNEKVIRAGMGAHFRLPLRICESWEQLAQQLPPE-MILYRAEAEAQTPYDQVDWRRPAALVIGGEAAGPSDAARQRTHA-----IAIPMQGQVESLNAAVAGAVILFEAARQRRHG 260          
BLAST of jgi.p|Trimin1|348193 vs. uniprot
Match: A0A7S2B686_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2B686_9EUKA)

HSP 1 Score: 194 bits (493), Expect = 1.530e-57
Identity = 118/240 (49.17%), Postives = 148/240 (61.67%), Query Frame = 1
Query:  139 EGCRLVTDALKAGLSPDLVLVSPEALASPGGSALSALLQRLSSDVVCLASGDCVARACDTVSPQGVVAVVARPLLPLPETVRLALVLDGVSDPGNMGTMVRTAAALGVDAVVMTGACVDLWSPKALRASMGAAFRVPSVATGTWRETRELLQARGLALYAADGGAATAHWEVPWSKPSALVVGSEAEGLSQAAREDLDRGVITGIRIPLSNGV------ESLNAAVAGAIVLGEAQRQRQ 840
            EG RLV DAL +GL P+ V++   ALAS  G  L   L +L +D V       V +  DT +PQGV+AV+A   LPLP    L LV DG+SDPGN+GT++R+AA  GVDAV++   C D W  K LR+ MGA FRVP    GTW +T +LL        AAD G   AH EV W + +AL+VGSEA GLS A R D     +   R+PL+ G+      ESLNAAVAG++VL EAQRQR+
Sbjct:    1 EGHRLVLDALASGLQPEFVVIHDAALASSIGERLGTALAQLETDRVVRTPAHIVEQLSDTQTPQGVIAVLAHEPLPLPPAPTLVLVCDGISDPGNLGTLLRSAAGSGVDAVLLLPGCSDPWGLKTLRSGMGAQFRVPLQHMGTWADTSDLLADWSCTALAADAGGELAHDEVDWRRGAALIVGSEAHGLSDAVRADPS---VQLCRVPLAEGLGASECLESLNAAVAGSVVLFEAQRQRR 237          
BLAST of jgi.p|Trimin1|348193 vs. uniprot
Match: A0A0P6YEI2_9CHLR (SpoU_sub_bind domain-containing protein n=2 Tax=Ardenticatena maritima TaxID=872965 RepID=A0A0P6YEI2_9CHLR)

HSP 1 Score: 191 bits (486), Expect = 2.400e-56
Identity = 116/269 (43.12%), Postives = 160/269 (59.48%), Query Frame = 1
Query:   61 ITSPTNPRIKT---LHKRKSRDSEGRVLVEGCRLVTDALKAGLSPDLVLVS-------PEALASPGGSALSALLQRLSSDVVCLASGDCVARACDTVSPQGVVAVVARPLLPLPETVRLALVLDGVSDPGNMGTMVRTAAALGVDAVVMTGACVDLWSPKALRASMGAAFRVPSVATGTWRETRELLQARGLALYAADGGAATAHWEVPWSKPSALVVGSEAEGLSQAAREDLDRGVITGIRIPLSNGVESLNAAVAGAIVLGEAQRQR 837
            ITS  NPR+K    LH+R+ R+ EG++L+EG RLV DA +AG++ + +  +       PEAL S        ++Q LS                DTV+PQG+VAV  RP L  P +  L L+ D V DPGN+GT++R AA  GV+ V++    VD+WSPK LRA MGA FR+P  A  TW E  + +   GL +Y AD   A  +++V W+ P+ L+VG E EG+ +AAR        T + IPL+  VESLNAA+AG ++L EA+RQR
Sbjct:    4 ITSLANPRVKAARALHRRRMREREGKILLEGARLVHDAFQAGVAFEALFYTSDQAAHIPEALRSCAWLVSEEVMQALS----------------DTVTPQGIVAVAERPQLAWPTSATLLLIADNVRDPGNLGTLLRAAAGAGVEGVLLPKGTVDVWSPKVLRAGMGAHFRLPVRAGLTWEEIAQAVN--GLTVYVADARGAVRYFDVDWTAPTVLIVGGETEGIGEAARALAH----TAVAIPLAREVESLNAAMAGTVILFEARRQR 250          
BLAST of jgi.p|Trimin1|348193 vs. uniprot
Match: A0A1X6PKW2_PORUM (SpoU_sub_bind domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PKW2_PORUM)

HSP 1 Score: 193 bits (491), Expect = 7.820e-56
Identity = 126/268 (47.01%), Postives = 164/268 (61.19%), Query Frame = 1
Query:   49 DLLDITSPTNPRIKTLH---KRKSRDSEGRVLVEGCRLVTDALKAG--LSPDLVLVSPEALASPGGSALSALLQRLSSDVVCLASGDCVARACDTVSPQGVVAVVARPLLPLPETVRLALVLDGVSDPGNMGTMVRTAAALGVDAVVMTGACVDLWSPKALRASMGAAFRVPSVATGTWRETRELLQARGLALYAADGGAATAHWEVPWSKPSALVVGSEAEGLSQAAREDLDRGVITGIRIPLSNGVESLNAAVAGAIVLGEAQRQR 837
            D +++ S  NPRIK +    +R+ R+ EG +L+EG RLV DAL A    +P   +V+    A+    ALS     ++ D + +A+ D VA  CDTV+PQGVVAVV RP   +     L L LDGV+DPGN+GT++R+AAA G D VV+T  C D+WSPKALRA MGA  R+P +A     E     + RGL L  ADG A  A+  V W+ P+ LVVG EAEG S A     D  V     IP+   VESLNAA+AG++VL EA+RQR
Sbjct:   88 DAVEVVSTRNPRIKAVRHLLRRRMREREGLLLLEGHRLVVDALGAARPAAPVHTVVATRQAAARLWPALSTATG-VARDALLVATPDVVASVCDTVTPQGVVAVVGRPSTTVVPGSTLLLALDGVADPGNVGTLLRSAAAAGADGVVLTKGCADVWSPKALRAGMGAQLRLPVLAGLEPEEVVAWARGRGLRLRVADGSAVMAYDGVDWAAPTVLVVGGEAEGPSAALLAAADDVVA----IPMLGEVESLNAAIAGSVVLYEARRQR 350          
BLAST of jgi.p|Trimin1|348193 vs. uniprot
Match: R7QT73_CHOCR (SpoU_sub_bind domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QT73_CHOCR)

HSP 1 Score: 189 bits (481), Expect = 4.720e-55
Identity = 120/266 (45.11%), Postives = 165/266 (62.03%), Query Frame = 1
Query:   55 LDITSPTNPRIK---TLHKRKSRDSEGRVLVEGCRLVTDALKAGLSPDLVLVSPEALASPGGSALSALLQ--RLSSDVVCLASGDCVARACDTVSPQGVVAVVARPLLPLPETVRLALVLDGVSDPGNMGTMVRTAAALGVDAVVMTGACVDLWSPKALRASMGAAFRVPSVATGTWRETRELLQARGLALYAADGGAATAHWEVPWSKPSALVVGSEAEGLSQAAREDLDRGVITGIRIPLSNGVESLNAAVAGAIVLGEAQRQR 837
            L++TS  NP +K   +L +R+ RD    +L+EG RL+ DAL A  +P  +  S + L     +A+ ALL   R S     L +   +   C+TVSPQGVVAV+ RP LPLP++  LALV D V DPGN+GT++R+AA  GVDAV+MT  C D W  K LRA MGA FR+P     +W E  +++   G  +  ADGG    + +V W  P+A+VVG EA G  + A ++  +G + GI  PL +G+ESLNAAVAG++VL E +RQR
Sbjct:   33 LELTSARNPHLKLARSLLRRRHRDKNNLILLEGQRLIEDALSASFAPHQLFYSDKLLRR--SAAMGALLADVRRSGCAPMLVAEPIMRSLCNTVSPQGVVAVLERPALPLPDSGTLALVCDEVRDPGNVGTLLRSAAGAGVDAVLMTHGCADPWGLKVLRAGMGAHFRLPVQVDQSWDEVMQVVHKWGCEVSVADGGGED-YAKVDWCGPAAIVVGGEANGPGERAFQEA-QGRVVGI--PLCSGMESLNAAVAGSVVLFEVRRQR 292          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348193 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z4A7_9STRA1.440e-195100.00tRNA/rRNA methyltransferase n=1 Tax=Tribonema minu... [more]
A0A6H5L4S8_9PHAE1.800e-9856.79SpoU_sub_bind domain-containing protein n=2 Tax=Ec... [more]
A0A8J5X903_DIALT7.870e-6849.62SpoU_sub_bind domain-containing protein n=1 Tax=Di... [more]
A0A7S0LQQ5_9EUKA7.130e-6345.83Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
R1BHS4_EMIHU1.920e-6246.04RNA methyltransferase n=3 Tax=Emiliania huxleyi Ta... [more]
A0A540V9T9_9CHLR1.840e-6047.94RNA methyltransferase n=1 Tax=Litorilinea aerophil... [more]
A0A7S2B686_9EUKA1.530e-5749.17Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A0P6YEI2_9CHLR2.400e-5643.12SpoU_sub_bind domain-containing protein n=2 Tax=Ar... [more]
A0A1X6PKW2_PORUM7.820e-5647.01SpoU_sub_bind domain-containing protein n=1 Tax=Po... [more]
R7QT73_CHOCR4.720e-5545.11SpoU_sub_bind domain-containing protein n=1 Tax=Ch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_20contigContig_20:1181901..1183538 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348193|estExt_Genemark1.C_Ctg_200155
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03016,ko03110
KEGG rclassRC00004,RC02723,RC02817
KEGG ReactionR00705,R00706,R00922,R00935
KEGG ModuleM00013
KEGG Pathwayko00280,ko00410,ko00562,ko00640,ko01100,ko01200,map00280,map00410,map00562,map00640,map01100,map01200
KEGG koko:K00140,ko:K03437,ko:K03768,ko:K20095
EC1.2.1.18,1.2.1.27,5.2.1.8
GOsGO:0000154,GO:0000451,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016435,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0031974,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070039,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360
Preferred nameRNMTL1
DescriptionRNA methyltransferase activity
COG categoryJ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0566@1|root,KOG2506@2759|Eukaryota
Evalue5.97e-105
Seed ortholog2880.D7FLV7
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptiontRNA/rRNA methyltransferase, SpoU type
Ec32 orthologEc-26_001080.1
TranscriptId348515
TrackFilteredModels1
ProteinId348193
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348193gene_4193Tribonema minus UTEX_B_3156 geneContig_20 1181901..1183538 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4193_3exon_4193_3Tribonema minus UTEX_B_3156 exonContig_20 1181901..1182158 -
exon_4193_2exon_4193_2Tribonema minus UTEX_B_3156 exonContig_20 1182682..1183243 -
exon_4193_1exon_4193_1Tribonema minus UTEX_B_3156 exonContig_20 1183450..1183538 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_4193UTR3_4193Tribonema minus UTEX_B_3156 three_prime_UTRContig_20 1181901..1181951 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4193CDS_4193Tribonema minus UTEX_B_3156 CDSContig_20 1183450..1183538 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348193Trimin1|348193|estExt_Genemark1.C_Ctg_200155Tribonema minus UTEX_B_3156 polypeptideContig_20 1181952..1183538 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4193 ID=mRNA_4193|Name=jgi.p|Trimin1|348193|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=909bp|location=Sequence derived from alignment at Contig_20:1181901..1183538- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGTCGACTGAGGCTTTCGAGCTATGGCGGCCGCCGGGCAGTGGCGA
TCTGCTGGACATCACCAGCCCCACCAATCCCCGCATCAAGACGCTGCACA
AGCGCAAATCTCGAGACAGCGAAGGGCGCGTGCTAGTGGAAGGCTGCAGG
CTAGTAACCGACGCCCTAAAGGCAGGCCTCTCGCCGGACCTGGTCCTGGT
GTCGCCCGAAGCCCTGGCGTCACCGGGCGGCAGCGCCCTCTCCGCGCTGC
TGCAGCGGCTCAGCAGCGACGTCGTGTGCCTCGCGTCCGGCGACTGCGTG
GCGCGCGCGTGCGACACGGTGTCGCCGCAGGGCGTTGTCGCCGTCGTCGC
GCGCCCCCTCCTCCCCCTGCCCGAAACGGTGCGGCTCGCGCTGGTGCTGG
ACGGCGTCAGCGACCCCGGCAACATGGGCACGATGGTGCGCACTGCGGCA
GCGCTCGGCGTGGACGCGGTGGTCATGACGGGCGCCTGTGTGGATCTGTG
GAGCCCCAAGGCGCTGCGCGCGTCGATGGGCGCGGCGTTTCGCGTGCCGA
GCGTTGCCACAGGGACGTGGCGGGAAACGCGCGAGCTGCTGCAGGCGCGC
GGGCTGGCGCTGTATGCGGCCGACGGCGGCGCTGCGACGGCGCACTGGGA
GGTGCCGTGGTCCAAGCCAAGTGCCCTAGTGGTGGGCTCGGAGGCTGAGG
GTCTCAGTCAGGCGGCTAGAGAAGATTTGGATCGAGGAGTCATCACTGGC
ATCAGAATACCCCTCAGCAATGGTGTTGAAAGTTTGAATGCAGCCGTGGC
CGGCGCCATCGTGCTGGGTGAAGCGCAACGGCAACGGCAACATGGAGTCA
ATACATGACACAGCTCGTCTTTGGGCTACGCACGAATTGCTATTGATGCA
ATACATCAA
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protein sequence of jgi.p|Trimin1|348193

>Trimin1|348193|estExt_Genemark1.C_Ctg_200155 ID=Trimin1|348193|estExt_Genemark1.C_Ctg_200155|Name=jgi.p|Trimin1|348193|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=286bp
MRSTEAFELWRPPGSGDLLDITSPTNPRIKTLHKRKSRDSEGRVLVEGCR
LVTDALKAGLSPDLVLVSPEALASPGGSALSALLQRLSSDVVCLASGDCV
ARACDTVSPQGVVAVVARPLLPLPETVRLALVLDGVSDPGNMGTMVRTAA
ALGVDAVVMTGACVDLWSPKALRASMGAAFRVPSVATGTWRETRELLQAR
GLALYAADGGAATAHWEVPWSKPSALVVGSEAEGLSQAAREDLDRGVITG
IRIPLSNGVESLNAAVAGAIVLGEAQRQRQHGVNT*
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mRNA from alignment at Contig_20:1181901..1183538-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4193 ID=mRNA_4193|Name=jgi.p|Trimin1|348193|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1638bp|location=Sequence derived from alignment at Contig_20:1181901..1183538- (Tribonema minus UTEX_B_3156 )
ATGCGGTCGACTGAGGCTTTCGAGCTATGGCGGCCGCCGGGCAGTGGCGA TCTGCTGGACATCACCAGCCCCACCAATCCCCGCATCAAGTACATCAGGC AAGCGCGTGCCATTGCAGAAGTTCATATGTAAAACGCACAGCTCAAGCTG GGGACAATTTTTCTGGACTCGATATATGGCGTTACAAGTGGAAAGGATGC ACGAACTGTGTTGTCATAGCTACATACATCGCAACTGTTCTTATCCTGTC GCTAACCTCGACATGCTGTACATGCTGCTCTGTCGCACACTGCAGGACGC TGCACAAGCGCAAATCTCGAGACAGCGAAGGGCGCGTGCTAGTGGAAGGC TGCAGGCTAGTAACCGACGCCCTAAAGGCAGGCCTCTCGCCGGACCTGGT CCTGGTGTCGCCCGAAGCCCTGGCGTCACCGGGCGGCAGCGCCCTCTCCG CGCTGCTGCAGCGGCTCAGCAGCGACGTCGTGTGCCTCGCGTCCGGCGAC TGCGTGGCGCGCGCGTGCGACACGGTGTCGCCGCAGGGCGTTGTCGCCGT CGTCGCGCGCCCCCTCCTCCCCCTGCCCGAAACGGTGCGGCTCGCGCTGG TGCTGGACGGCGTCAGCGACCCCGGCAACATGGGCACGATGGTGCGCACT GCGGCAGCGCTCGGCGTGGACGCGGTGGTCATGACGGGCGCCTGTGTGGA TCTGTGGAGCCCCAAGGCGCTGCGCGCGTCGATGGGCGCGGCGTTTCGCG TGCCGAGCGTTGCCACAGGGACGTGGCGGGAAACGCGCGAGCTGCTGCAG GCGCGCGGGCTGGCGCTGTATGCGGCCGACGGCGGCGCTGCGACGGCGCA CTGGGAGGTACGTGAGAAGGTCATGACTCGAGGTTCCAAGCGGAGAGTTC GTTGCCGTTGGGGCACCGCTCGAGGGATGAACAGTGACCGTCTGATCCCA TCAACTGCAGCTCCCTGGCAGCACTGGCTGCTACAGCGCAAGTATGTAGA GATTGCAGCGCCTTGGTTGCACTGGCTGCTACATAGAATGTGGGTCTGCT GGCTCCAACGTTGAGGTACCCTCCAGGCACAGCATGCATACCCTAGGTTA GACAGTCTGCTTTAAGACAGCCTTGTGCCAGTGTGCTTTCAAAGTTCAAA GTGCTGTGATACCGCAGCGGCCGTGTGCATCAATATAGCCCCATGCAATC CTGGTGTCATGCAGAGTGCTTGCATCGGCAGCGGCTTGAACTGCAGTGGA ACCGCAAGACAGCGCAACGCAGATGCCTGCGTGCCCACACCTGAAAAACT ATTGACTGCAATTGCCATGAATGCTTGCTGAGCATCACGTGCAACATATT AAATTGTCGTTGCTGCCGCGCCCTCTGCAGGTGCCGTGGTCCAAGCCAAG TGCCCTAGTGGTGGGCTCGGAGGCTGAGGGTCTCAGTCAGGCGGCTAGAG AAGATTTGGATCGAGGAGTCATCACTGGCATCAGAATACCCCTCAGCAAT GGTGTTGAAAGTTTGAATGCAGCCGTGGCCGGCGCCATCGTGCTGGGTGA AGCGCAACGGCAACGGCAACATGGAGTCAATACATGACACAGCTCGTCTT TGGGCTACGCACGAATTGCTATTGATGCAATACATCAA
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Coding sequence (CDS) from alignment at Contig_20:1181901..1183538-

>mRNA_4193 ID=mRNA_4193|Name=jgi.p|Trimin1|348193|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=858bp|location=Sequence derived from alignment at Contig_20:1181901..1183538- (Tribonema minus UTEX_B_3156 )
ATGCGGTCGACTGAGGCTTTCGAGCTATGGCGGCCGCCGGGCAGTGGCGA
TCTGCTGGACATCACCAGCCCCACCAATCCCCGCATCAAGACGCTGCACA
AGCGCAAATCTCGAGACAGCGAAGGGCGCGTGCTAGTGGAAGGCTGCAGG
CTAGTAACCGACGCCCTAAAGGCAGGCCTCTCGCCGGACCTGGTCCTGGT
GTCGCCCGAAGCCCTGGCGTCACCGGGCGGCAGCGCCCTCTCCGCGCTGC
TGCAGCGGCTCAGCAGCGACGTCGTGTGCCTCGCGTCCGGCGACTGCGTG
GCGCGCGCGTGCGACACGGTGTCGCCGCAGGGCGTTGTCGCCGTCGTCGC
GCGCCCCCTCCTCCCCCTGCCCGAAACGGTGCGGCTCGCGCTGGTGCTGG
ACGGCGTCAGCGACCCCGGCAACATGGGCACGATGGTGCGCACTGCGGCA
GCGCTCGGCGTGGACGCGGTGGTCATGACGGGCGCCTGTGTGGATCTGTG
GAGCCCCAAGGCGCTGCGCGCGTCGATGGGCGCGGCGTTTCGCGTGCCGA
GCGTTGCCACAGGGACGTGGCGGGAAACGCGCGAGCTGCTGCAGGCGCGC
GGGCTGGCGCTGTATGCGGCCGACGGCGGCGCTGCGACGGCGCACTGGGA
GGTGCCGTGGTCCAAGCCAAGTGCCCTAGTGGTGGGCTCGGAGGCTGAGG
GTCTCAGTCAGGCGGCTAGAGAAGATTTGGATCGAGGAGTCATCACTGGC
ATCAGAATACCCCTCAGCAATGGTGTTGAAAGTTTGAATGCAGCCGTGGC
CGGCGCCATCGTGCTGGGTGAAGCGCAACGGCAACGGCAACATGGAGTCA
ATACATGA
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