mRNA_4140 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|162299
Unique Name	mRNA_4140
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|162299 vs. uniprot
Match: A0A835Z5N2_9STRA (KIX_2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5N2_9STRA)

HSP 1 Score: 194 bits (493), Expect = 7.720e-63
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1

Query:    1 MQHDKAPLTGRWQANDDMPHRKKILSRILVYLRQHRRNVRPEWIKKVPLMAQRLEDTLYRDAASFAEYNDMNTLRTRLQALASRLSHIAPSGRRQSA 291
            MQHDKAPLTGRWQANDDMPHRKKILSRILVYLRQHRRNVRPEWIKKVPLMAQRLEDTLYRDAASFAEYNDMNTLRTRLQALASRLSHIAPSGRRQSA
Sbjct:    1 MQHDKAPLTGRWQANDDMPHRKKILSRILVYLRQHRRNVRPEWIKKVPLMAQRLEDTLYRDAASFAEYNDMNTLRTRLQALASRLSHIAPSGRRQSA 97

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BLAST of jgi.p|Trimin1|162299 vs. uniprot
Match: A0A835Z250_9STRA (KIX_2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z250_9STRA)

HSP 1 Score: 128 bits (322), Expect = 3.990e-36
Identity = 65/96 (67.71%), Postives = 79/96 (82.29%), Query Frame = 1

Query:    4 QHDKAP-LTGRWQANDDMPHRKKILSRILVYLRQHRRNVRPEWIKKVPLMAQRLEDTLYRDAASFAEYNDMNTLRTRLQALASRLSHIAPSGRRQS 288
            Q  + P LTG WQ+N+D+PHRKKILSRI+VYL+Q + N RPEWIKKVPLMA+RLED+LYR+AA+FAEYNDMNTLR RLQ LA RL + A   + Q+
Sbjct:   49 QQQRVPHLTGGWQSNNDIPHRKKILSRIVVYLQQRKPNARPEWIKKVPLMAKRLEDSLYRNAATFAEYNDMNTLRARLQQLALRLGNKAQQAKLQA 144

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BLAST of jgi.p|Trimin1|162299 vs. uniprot
Match: A0A835Z470_9STRA (KIX_2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z470_9STRA)

HSP 1 Score: 125 bits (314), Expect = 1.040e-35
Identity = 60/80 (75.00%), Postives = 70/80 (87.50%), Query Frame = 1

Query:   16 APLTGRWQANDDMPHRKKILSRILVYLRQHRRNVRPEWIKKVPLMAQRLEDTLYRDAASFAEYNDMNTLRTRLQALASRL 255
            APLTG WQ++DD+PHR+KILSRI++YL Q R N  PEW++KVPLMA+RLED LYRDAASFAEYNDM+TLR RLQ LA RL
Sbjct:    4 APLTGGWQSDDDVPHRRKILSRIVLYLHQRRPNAHPEWVEKVPLMAKRLEDALYRDAASFAEYNDMSTLRARLQQLALRL 83

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BLAST of jgi.p|Trimin1|162299 vs. uniprot
Match: A0A835ZBX7_9STRA (KIX_2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBX7_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.620e-29
Identity = 54/89 (60.67%), Postives = 68/89 (76.40%), Query Frame = 1

Query:   22 LTGRWQANDDMPHRKKILSRILVYLRQHRRNVRPEWIKKVPLMAQRLEDTLYRDAASFAEYNDMNTLRTRLQALASRLSHIAPSGRRQS 288
            LT RWQ+N D  HR+KILSR+++YL+Q + N RPEWI++VP  AQRLE++LYR AA+FAEYNDM TL  RLQ LA RL H A   + Q+
Sbjct:   40 LTSRWQSNQDRAHRRKILSRVVLYLQQRKPNARPEWIREVPRTAQRLENSLYRKAATFAEYNDMKTLHARLQQLALRLGHNARQAKLQA 128

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BLAST of jgi.p|Trimin1|162299 vs. uniprot
Match: A0A836CHH1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHH1_9STRA)

HSP 1 Score: 112 bits (281), Expect = 7.010e-28
Identity = 57/79 (72.15%), Postives = 69/79 (87.34%), Query Frame = 1

Query:   52 MPHRKKILSRILVYLRQHRRNVRPEWIKKVPLMAQRLEDTLYRDAASFAEYNDMNTLRTRLQALASRLSHIAPSGRRQS 288
            MPHR+KILSRI++YL+Q   N R EW+KK+PLMA+RLED+LYR+AASFAEYNDMNTLR RLQALASRLSH A   ++Q+
Sbjct:    1 MPHRRKILSRIVMYLQQRNPNGRLEWVKKIPLMAKRLEDSLYRNAASFAEYNDMNTLRARLQALASRLSHKARHHKQQA 79

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BLAST of jgi.p|Trimin1|162299 vs. uniprot
Match: D8LPT8_ECTSI (KIX_2 domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPT8_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 3.890e-24
Identity = 51/82 (62.20%), Postives = 64/82 (78.05%), Query Frame = 1

Query:   34 WQANDDMPHRKKILSRILVYLRQHRRNVRPEWIKKVPLMAQRLEDTLYRDAASFAEYNDMNTLRTRLQALASRLSHIAPSGR 279
            WQ+N+D+P RK+ILS+I+ YL+Q + N RPEWI+KVPLMA+RLED+LYR+A SF EY D  TLR RLQ LA+RL   A   R
Sbjct:   54 WQSNNDIPSRKEILSKIVTYLQQRKPNARPEWIQKVPLMAKRLEDSLYRNAKSFQEYKDHATLRQRLQQLAARLGTNAQQNR 135

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BLAST of jgi.p|Trimin1|162299 vs. uniprot
Match: A0A6H5KPY4_9PHAE (Histone acetyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY4_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 1.370e-22
Identity = 50/82 (60.98%), Postives = 64/82 (78.05%), Query Frame = 1

Query:   34 WQANDDMPHRKKILSRILVYLRQHRRNVRPEWIKKVPLMAQRLEDTLYRDAASFAEYNDMNTLRTRLQALASRLSHIAPSGR 279
            WQ+N+D+P RK+ILS+I+ YL+Q + N RPEWI+KVPLMA+RLE++LYR+A SF EY D  TLR RLQ LA+RL   A   R
Sbjct:  441 WQSNNDIPSRKEILSKIVTYLQQRKPNARPEWIQKVPLMAKRLEESLYRNAKSFKEYKDHATLRQRLQQLAARLGTNAQQNR 522

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BLAST of jgi.p|Trimin1|162299 vs. uniprot
Match: K0QZC1_THAOC (Histone acetyltransferase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0QZC1_THAOC)

HSP 1 Score: 84.3 bits (207), Expect = 5.330e-17
Identity = 40/81 (49.38%), Postives = 58/81 (71.60%), Query Frame = 1

Query:    4 QHDKAPLTGRWQANDDMPHRKKILSRILVYLRQHRRNVRPEWIKKVPLMAQRLEDTLYRDAASFAEYNDMNTLRTRLQALA 246
            Q    PL G WQ++ D+  R+K++++I+  LRQ + N   EW+ K+P MA+RLE++LYR AASF  YND++TL+ RLQ LA
Sbjct:   72 QRHPQPLNGGWQSDKDVDDRRKMIAKIVQLLRQRKPNAPAEWLNKLPQMAKRLEESLYRSAASFDAYNDISTLKARLQQLA 152

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BLAST of jgi.p|Trimin1|162299 vs. uniprot
Match: B7FZQ7_PHATC (Histone acetyltransferase n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FZQ7_PHATC)

HSP 1 Score: 82.0 bits (201), Expect = 4.170e-16
Identity = 39/75 (52.00%), Postives = 55/75 (73.33%), Query Frame = 1

Query:   22 LTGRWQANDDMPHRKKILSRILVYLRQHRRNVRPEWIKKVPLMAQRLEDTLYRDAASFAEYNDMNTLRTRLQALA 246
            L G WQ++ D   R+K++++I+  L+Q + N   EW+KK+P MA+RLE++LYR A SF EYND NTL+ RLQ LA
Sbjct:   99 LNGGWQSDKDYQERRKMIAKIVHLLQQRKPNAPQEWLKKLPQMAKRLEESLYRTATSFEEYNDANTLKHRLQQLA 173

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BLAST of jgi.p|Trimin1|162299 vs. uniprot
Match: A0A7R9WLC7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WLC7_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 6.840e-16
Identity = 39/75 (52.00%), Postives = 54/75 (72.00%), Query Frame = 1

Query:   22 LTGRWQANDDMPHRKKILSRILVYLRQHRRNVRPEWIKKVPLMAQRLEDTLYRDAASFAEYNDMNTLRTRLQALA 246
            L G WQ+  D+  R+K+++RI+  L+Q + N   EW+KK+P MA+RLE++LYR A SF  YND NTL+ RLQ LA
Sbjct:   59 LNGGWQSESDINDRRKMIARIVQLLQQRKPNAPEEWLKKLPQMAKRLEESLYRSAPSFRAYNDPNTLKQRLQQLA 133

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|162299 vs. uniprot

BLAST of jgi.p|Trimin1|162299 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835Z5N2_9STRA	7.720e-63	100.00	KIX_2 domain-containing protein n=1 Tax=Tribonema ...	[more]
A0A835Z250_9STRA	3.990e-36	67.71	KIX_2 domain-containing protein (Fragment) n=1 Tax...	[more]
A0A835Z470_9STRA	1.040e-35	75.00	KIX_2 domain-containing protein (Fragment) n=1 Tax...	[more]
A0A835ZBX7_9STRA	1.620e-29	60.67	KIX_2 domain-containing protein (Fragment) n=1 Tax...	[more]
A0A836CHH1_9STRA	7.010e-28	72.15	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
D8LPT8_ECTSI	3.890e-24	62.20	KIX_2 domain-containing protein (Fragment) n=1 Tax...	[more]
A0A6H5KPY4_9PHAE	1.370e-22	60.98	Histone acetyltransferase n=1 Tax=Ectocarpus sp. C...	[more]
K0QZC1_THAOC	5.330e-17	49.38	Histone acetyltransferase n=1 Tax=Thalassiosira oc...	[more]
B7FZQ7_PHATC	4.170e-16	52.00	Histone acetyltransferase n=1 Tax=Phaeodactylum tr...	[more]
A0A7R9WLC7_9STRA	6.840e-16	52.00	Hypothetical protein (Fragment) n=1 Tax=Pseudictyo...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_20	contig	Contig_20:791671..791964 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|162299\|e_gw1.20.291.1
Max annot lvl	2759\|Eukaryota
EggNOG OGs	2CNEQ@1\|root,2QVQU@2759\|Eukaryota
Evalue	6.37e-25
Seed ortholog	2880.D8LPT8
Hectar predicted targeting category	other localisation
TranscriptId	162621
Track	FilteredModels1
ProteinId	162299

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|162299	gene_4140	Tribonema minus UTEX_B_3156	gene	Contig_20 791671..791964 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_4140_1	exon_4140_1	Tribonema minus UTEX_B_3156	exon	Contig_20 791671..791964 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_4140	CDS_4140	Tribonema minus UTEX_B_3156	CDS	Contig_20 791671..791964 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|162299	Trimin1\|162299\|e_gw1.20.291.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_20 791671..791964 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_20:791671..791964+
coding sequence from alignment at Contig_20:791671..791964+

spliced messenger RNA

>mRNA_4140 ID=mRNA_4140|Name=jgi.p|Trimin1|162299|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=294bp|location=Sequence derived from alignment at Contig_20:791671..791964+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCATGACAAGGCGCCTCTGACCGGCAGGTGGCAGGCAAACGACGA
CATGCCGCACCGCAAGAAGATCCTGTCGCGAATCCTCGTGTACCTGCGGC
AGCACAGGCGGAACGTGCGCCCGGAGTGGATCAAGAAGGTGCCGCTCATG
GCGCAGCGCCTCGAGGACACGCTGTACCGTGACGCCGCGTCGTTCGCCGA
GTACAACGACATGAACACGCTGCGCACGCGGCTGCAGGCGCTGGCATCGC
GCCTGAGCCACATTGCGCCCTCAGGGCGCAGGCAATCAGCCTGA

protein sequence of jgi.p|Trimin1|162299

>Trimin1|162299|e_gw1.20.291.1 ID=Trimin1|162299|e_gw1.20.291.1|Name=jgi.p|Trimin1|162299|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=98bp
MQHDKAPLTGRWQANDDMPHRKKILSRILVYLRQHRRNVRPEWIKKVPLM
AQRLEDTLYRDAASFAEYNDMNTLRTRLQALASRLSHIAPSGRRQSA*

mRNA from alignment at Contig_20:791671..791964+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4140 ID=mRNA_4140|Name=jgi.p|Trimin1|162299|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=294bp|location=Sequence derived from alignment at Contig_20:791671..791964+ (Tribonema minus UTEX_B_3156 )
ATGCAGCATGACAAGGCGCCTCTGACCGGCAGGTGGCAGGCAAACGACGA
CATGCCGCACCGCAAGAAGATCCTGTCGCGAATCCTCGTGTACCTGCGGC
AGCACAGGCGGAACGTGCGCCCGGAGTGGATCAAGAAGGTGCCGCTCATG
GCGCAGCGCCTCGAGGACACGCTGTACCGTGACGCCGCGTCGTTCGCCGA
GTACAACGACATGAACACGCTGCGCACGCGGCTGCAGGCGCTGGCATCGC
GCCTGAGCCACATTGCGCCCTCAGGGCGCAGGCAATCAGCCTGA

Coding sequence (CDS) from alignment at Contig_20:791671..791964+

>mRNA_4140 ID=mRNA_4140|Name=jgi.p|Trimin1|162299|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=294bp|location=Sequence derived from alignment at Contig_20:791671..791964+ (Tribonema minus UTEX_B_3156 )
ATGCAGCATGACAAGGCGCCTCTGACCGGCAGGTGGCAGGCAAACGACGA
CATGCCGCACCGCAAGAAGATCCTGTCGCGAATCCTCGTGTACCTGCGGC
AGCACAGGCGGAACGTGCGCCCGGAGTGGATCAAGAAGGTGCCGCTCATG
GCGCAGCGCCTCGAGGACACGCTGTACCGTGACGCCGCGTCGTTCGCCGA
GTACAACGACATGAACACGCTGCGCACGCGGCTGCAGGCGCTGGCATCGC
GCCTGAGCCACATTGCGCCCTCAGGGCGCAGGCAATCAGCCTGA