mRNA_4135 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|151334 vs. uniprot
Match: A0A835Z250_9STRA (KIX_2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z250_9STRA) HSP 1 Score: 266 bits (679), Expect = 1.180e-89 Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1 Query: 1 QQQQQQLLQHQQLQAHLLQQQAAQHAPGALPTAQPALPAAAVLQLQHHQQQRVPHLTGGWQSNNDIPHRKKILSRIVVYLQQRKPNARPEWIKKVPLMAKRLEDSLYRNAATFAEYNDMNTLRARLQQLALRLGNKAQQAKLQAGQ 438 QQQQQQLLQHQQLQAHLLQQQAAQHAPGALPTAQPALPAAAVLQLQHHQQQRVPHLTGGWQSNNDIPHRKKILSRIVVYLQQRKPNARPEWIKKVPLMAKRLEDSLYRNAATFAEYNDMNTLRARLQQLALRLGNKAQQAKLQAGQ Sbjct: 1 QQQQQQLLQHQQLQAHLLQQQAAQHAPGALPTAQPALPAAAVLQLQHHQQQRVPHLTGGWQSNNDIPHRKKILSRIVVYLQQRKPNARPEWIKKVPLMAKRLEDSLYRNAATFAEYNDMNTLRARLQQLALRLGNKAQQAKLQAGQ 146
BLAST of jgi.p|Trimin1|151334 vs. uniprot
Match: A0A835ZBX7_9STRA (KIX_2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBX7_9STRA) HSP 1 Score: 144 bits (362), Expect = 1.240e-41 Identity = 81/124 (65.32%), Postives = 94/124 (75.81%), Query Frame = 1 Query: 73 HAPGALPTAQPALPAAAVLQLQHHQ----QQRVPHLTGGWQSNNDIPHRKKILSRIVVYLQQRKPNARPEWIKKVPLMAKRLEDSLYRNAATFAEYNDMNTLRARLQQLALRLGNKAQQAKLQA 432 HAP P+A AA + + H QQR+ HLT WQSN D HR+KILSR+V+YLQQRKPNARPEWI++VP A+RLE+SLYR AATFAEYNDM TL ARLQQLALRLG+ A+QAKLQA Sbjct: 5 HAPQRPPSASARSAAAEQVAARQHSAERNQQRMTHLTSRWQSNQDRAHRRKILSRVVLYLQQRKPNARPEWIREVPRTAQRLENSLYRKAATFAEYNDMKTLHARLQQLALRLGHNARQAKLQA 128
BLAST of jgi.p|Trimin1|151334 vs. uniprot
Match: A0A835Z470_9STRA (KIX_2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z470_9STRA) HSP 1 Score: 140 bits (353), Expect = 7.600e-41 Identity = 68/84 (80.95%), Postives = 80/84 (95.24%), Query Frame = 1 Query: 151 QRVPHLTGGWQSNNDIPHRKKILSRIVVYLQQRKPNARPEWIKKVPLMAKRLEDSLYRNAATFAEYNDMNTLRARLQQLALRLG 402 QRV LTGGWQS++D+PHR+KILSRIV+YL QR+PNA PEW++KVPLMAKRLED+LYR+AA+FAEYNDM+TLRARLQQLALRLG Sbjct: 1 QRVAPLTGGWQSDDDVPHRRKILSRIVLYLHQRRPNAHPEWVEKVPLMAKRLEDALYRDAASFAEYNDMSTLRARLQQLALRLG 84
BLAST of jgi.p|Trimin1|151334 vs. uniprot
Match: A0A835Z5N2_9STRA (KIX_2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5N2_9STRA) HSP 1 Score: 124 bits (312), Expect = 1.910e-34 Identity = 63/89 (70.79%), Postives = 76/89 (85.39%), Query Frame = 1 Query: 166 LTGGWQSNNDIPHRKKILSRIVVYLQQRKPNARPEWIKKVPLMAKRLEDSLYRNAATFAEYNDMNTLRARLQQLALRLGNKAQQAKLQA 432 LTG WQ+N+D+PHRKKILSRI+VYL+Q + N RPEWIKKVPLMA+RLED+LYR+AA+FAEYNDMNTLR RLQ LA RL + A + Q+ Sbjct: 8 LTGRWQANDDMPHRKKILSRILVYLRQHRRNVRPEWIKKVPLMAQRLEDTLYRDAASFAEYNDMNTLRTRLQALASRLSHIAPSGRRQS 96
BLAST of jgi.p|Trimin1|151334 vs. uniprot
Match: D8LPT8_ECTSI (KIX_2 domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPT8_ECTSI) HSP 1 Score: 126 bits (316), Expect = 1.160e-32 Identity = 65/80 (81.25%), Postives = 69/80 (86.25%), Query Frame = 1 Query: 178 WQSNNDIPHRKKILSRIVVYLQQRKPNARPEWIKKVPLMAKRLEDSLYRNAATFAEYNDMNTLRARLQQLALRLGNKAQQ 417 WQSNNDIP RK+ILS+IV YLQQRKPNARPEWI+KVPLMAKRLEDSLYRNA +F EY D TLR RLQQLA RLG AQQ Sbjct: 54 WQSNNDIPSRKEILSKIVTYLQQRKPNARPEWIQKVPLMAKRLEDSLYRNAKSFQEYKDHATLRQRLQQLAARLGTNAQQ 133
BLAST of jgi.p|Trimin1|151334 vs. uniprot
Match: A0A836CHH1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHH1_9STRA) HSP 1 Score: 124 bits (311), Expect = 1.730e-31 Identity = 64/81 (79.01%), Postives = 72/81 (88.89%), Query Frame = 1 Query: 196 IPHRKKILSRIVVYLQQRKPNARPEWIKKVPLMAKRLEDSLYRNAATFAEYNDMNTLRARLQQLALRLGNKAQQAKLQAGQ 438 +PHR+KILSRIV+YLQQR PN R EW+KK+PLMAKRLEDSLYRNAA+FAEYNDMNTLRARLQ LA RL +KA+ K QAGQ Sbjct: 1 MPHRRKILSRIVMYLQQRNPNGRLEWVKKIPLMAKRLEDSLYRNAASFAEYNDMNTLRARLQALASRLSHKARHHKQQAGQ 81
BLAST of jgi.p|Trimin1|151334 vs. uniprot
Match: A0A6H5KPY4_9PHAE (Histone acetyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY4_9PHAE) HSP 1 Score: 125 bits (315), Expect = 1.120e-30 Identity = 68/93 (73.12%), Postives = 75/93 (80.65%), Query Frame = 1 Query: 163 HLTGG---WQSNNDIPHRKKILSRIVVYLQQRKPNARPEWIKKVPLMAKRLEDSLYRNAATFAEYNDMNTLRARLQQLALRLGNKAQQAKLQA 432 H TG WQSNNDIP RK+ILS+IV YLQQRKPNARPEWI+KVPLMAKRLE+SLYRNA +F EY D TLR RLQQLA RLG AQQ + +A Sbjct: 433 HGTGNGLIWQSNNDIPSRKEILSKIVTYLQQRKPNARPEWIQKVPLMAKRLEESLYRNAKSFKEYKDHATLRQRLQQLAARLGTNAQQNRAKA 525
BLAST of jgi.p|Trimin1|151334 vs. uniprot
Match: K0QZC1_THAOC (Histone acetyltransferase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0QZC1_THAOC) HSP 1 Score: 108 bits (269), Expect = 7.170e-25 Identity = 56/98 (57.14%), Postives = 75/98 (76.53%), Query Frame = 1 Query: 127 LQLQH----HQQQRVPHLTGGWQSNNDIPHRKKILSRIVVYLQQRKPNARPEWIKKVPLMAKRLEDSLYRNAATFAEYNDMNTLRARLQQLALRLGNK 408 LQ QH HQQ+ L GGWQS+ D+ R+K++++IV L+QRKPNA EW+ K+P MAKRLE+SLYR+AA+F YND++TL+ARLQQLA+ +G K Sbjct: 61 LQQQHQVRAHQQRHPQPLNGGWQSDKDVDDRRKMIAKIVQLLRQRKPNAPAEWLNKLPQMAKRLEESLYRSAASFDAYNDISTLKARLQQLAMNIGMK 158
BLAST of jgi.p|Trimin1|151334 vs. uniprot
Match: A0A1Z5JQN1_FISSO (Histone acetyltransferase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JQN1_FISSO) HSP 1 Score: 108 bits (271), Expect = 9.170e-25 Identity = 59/102 (57.84%), Postives = 76/102 (74.51%), Query Frame = 1 Query: 130 QLQHHQQQRVPH--LTGGWQSNNDIPHRKKILSRIVVYLQQRKPNARPEWIKKVPLMAKRLEDSLYRNAATFAEYNDMNTLRARLQQLALRLGNKAQQAKLQ 429 Q Q QQQ PH L GGWQS+ D R+K++++IV LQQRKPNA EW+KK+P MAKRLE+SLYR+A +F EYND NTL+ RLQQLA+ +G K ++ + Q Sbjct: 21 QQQPQQQQIFPHQGLNGGWQSDKDYEDRRKMIAKIVHLLQQRKPNAPQEWLKKLPQMAKRLEESLYRSAKSFNEYNDANTLKHRLQQLAVNIGMKTKKLQQQ 122
BLAST of jgi.p|Trimin1|151334 vs. uniprot
Match: B7FZQ7_PHATC (Histone acetyltransferase n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FZQ7_PHATC) HSP 1 Score: 108 bits (269), Expect = 1.710e-24 Identity = 57/95 (60.00%), Postives = 70/95 (73.68%), Query Frame = 1 Query: 130 QLQHHQQQRVPH--LTGGWQSNNDIPHRKKILSRIVVYLQQRKPNARPEWIKKVPLMAKRLEDSLYRNAATFAEYNDMNTLRARLQQLALRLGNK 408 Q Q QQ PH L GGWQS+ D R+K++++IV LQQRKPNA EW+KK+P MAKRLE+SLYR A +F EYND NTL+ RLQQLA+ +G K Sbjct: 85 QQQAPPQQHFPHQGLNGGWQSDKDYQERRKMIAKIVHLLQQRKPNAPQEWLKKLPQMAKRLEESLYRTATSFEEYNDANTLKHRLQQLAVNIGQK 179 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|151334 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_4135 ID=mRNA_4135|Name=jgi.p|Trimin1|151334|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=438bp|location=Sequence derived from alignment at Contig_20:760790..761569- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CAGCAGCAGCAGCAGCAGCTGCTGCAGCACCAGCAGCTGCAGGCGCACCTback to top protein sequence of jgi.p|Trimin1|151334 >Trimin1|151334|gw1.20.223.1 ID=Trimin1|151334|gw1.20.223.1|Name=jgi.p|Trimin1|151334|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=146bp QQQQQQLLQHQQLQAHLLQQQAAQHAPGALPTAQPALPAAAVLQLQHHQQback to top mRNA from alignment at Contig_20:760790..761569- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_4135 ID=mRNA_4135|Name=jgi.p|Trimin1|151334|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=780bp|location=Sequence derived from alignment at Contig_20:760790..761569- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_20:760790..761569- >mRNA_4135 ID=mRNA_4135|Name=jgi.p|Trimin1|151334|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=438bp|location=Sequence derived from alignment at Contig_20:760790..761569- (Tribonema minus UTEX_B_3156 )back to top |