mRNA_4135 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|151334
Unique NamemRNA_4135
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|151334 vs. uniprot
Match: A0A835Z250_9STRA (KIX_2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z250_9STRA)

HSP 1 Score: 266 bits (679), Expect = 1.180e-89
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1
Query:    1 QQQQQQLLQHQQLQAHLLQQQAAQHAPGALPTAQPALPAAAVLQLQHHQQQRVPHLTGGWQSNNDIPHRKKILSRIVVYLQQRKPNARPEWIKKVPLMAKRLEDSLYRNAATFAEYNDMNTLRARLQQLALRLGNKAQQAKLQAGQ 438
            QQQQQQLLQHQQLQAHLLQQQAAQHAPGALPTAQPALPAAAVLQLQHHQQQRVPHLTGGWQSNNDIPHRKKILSRIVVYLQQRKPNARPEWIKKVPLMAKRLEDSLYRNAATFAEYNDMNTLRARLQQLALRLGNKAQQAKLQAGQ
Sbjct:    1 QQQQQQLLQHQQLQAHLLQQQAAQHAPGALPTAQPALPAAAVLQLQHHQQQRVPHLTGGWQSNNDIPHRKKILSRIVVYLQQRKPNARPEWIKKVPLMAKRLEDSLYRNAATFAEYNDMNTLRARLQQLALRLGNKAQQAKLQAGQ 146          
BLAST of jgi.p|Trimin1|151334 vs. uniprot
Match: A0A835ZBX7_9STRA (KIX_2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBX7_9STRA)

HSP 1 Score: 144 bits (362), Expect = 1.240e-41
Identity = 81/124 (65.32%), Postives = 94/124 (75.81%), Query Frame = 1
Query:   73 HAPGALPTAQPALPAAAVLQLQHHQ----QQRVPHLTGGWQSNNDIPHRKKILSRIVVYLQQRKPNARPEWIKKVPLMAKRLEDSLYRNAATFAEYNDMNTLRARLQQLALRLGNKAQQAKLQA 432
            HAP   P+A     AA  +  + H     QQR+ HLT  WQSN D  HR+KILSR+V+YLQQRKPNARPEWI++VP  A+RLE+SLYR AATFAEYNDM TL ARLQQLALRLG+ A+QAKLQA
Sbjct:    5 HAPQRPPSASARSAAAEQVAARQHSAERNQQRMTHLTSRWQSNQDRAHRRKILSRVVLYLQQRKPNARPEWIREVPRTAQRLENSLYRKAATFAEYNDMKTLHARLQQLALRLGHNARQAKLQA 128          
BLAST of jgi.p|Trimin1|151334 vs. uniprot
Match: A0A835Z470_9STRA (KIX_2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z470_9STRA)

HSP 1 Score: 140 bits (353), Expect = 7.600e-41
Identity = 68/84 (80.95%), Postives = 80/84 (95.24%), Query Frame = 1
Query:  151 QRVPHLTGGWQSNNDIPHRKKILSRIVVYLQQRKPNARPEWIKKVPLMAKRLEDSLYRNAATFAEYNDMNTLRARLQQLALRLG 402
            QRV  LTGGWQS++D+PHR+KILSRIV+YL QR+PNA PEW++KVPLMAKRLED+LYR+AA+FAEYNDM+TLRARLQQLALRLG
Sbjct:    1 QRVAPLTGGWQSDDDVPHRRKILSRIVLYLHQRRPNAHPEWVEKVPLMAKRLEDALYRDAASFAEYNDMSTLRARLQQLALRLG 84          
BLAST of jgi.p|Trimin1|151334 vs. uniprot
Match: A0A835Z5N2_9STRA (KIX_2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5N2_9STRA)

HSP 1 Score: 124 bits (312), Expect = 1.910e-34
Identity = 63/89 (70.79%), Postives = 76/89 (85.39%), Query Frame = 1
Query:  166 LTGGWQSNNDIPHRKKILSRIVVYLQQRKPNARPEWIKKVPLMAKRLEDSLYRNAATFAEYNDMNTLRARLQQLALRLGNKAQQAKLQA 432
            LTG WQ+N+D+PHRKKILSRI+VYL+Q + N RPEWIKKVPLMA+RLED+LYR+AA+FAEYNDMNTLR RLQ LA RL + A   + Q+
Sbjct:    8 LTGRWQANDDMPHRKKILSRILVYLRQHRRNVRPEWIKKVPLMAQRLEDTLYRDAASFAEYNDMNTLRTRLQALASRLSHIAPSGRRQS 96          
BLAST of jgi.p|Trimin1|151334 vs. uniprot
Match: D8LPT8_ECTSI (KIX_2 domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPT8_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 1.160e-32
Identity = 65/80 (81.25%), Postives = 69/80 (86.25%), Query Frame = 1
Query:  178 WQSNNDIPHRKKILSRIVVYLQQRKPNARPEWIKKVPLMAKRLEDSLYRNAATFAEYNDMNTLRARLQQLALRLGNKAQQ 417
            WQSNNDIP RK+ILS+IV YLQQRKPNARPEWI+KVPLMAKRLEDSLYRNA +F EY D  TLR RLQQLA RLG  AQQ
Sbjct:   54 WQSNNDIPSRKEILSKIVTYLQQRKPNARPEWIQKVPLMAKRLEDSLYRNAKSFQEYKDHATLRQRLQQLAARLGTNAQQ 133          
BLAST of jgi.p|Trimin1|151334 vs. uniprot
Match: A0A836CHH1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHH1_9STRA)

HSP 1 Score: 124 bits (311), Expect = 1.730e-31
Identity = 64/81 (79.01%), Postives = 72/81 (88.89%), Query Frame = 1
Query:  196 IPHRKKILSRIVVYLQQRKPNARPEWIKKVPLMAKRLEDSLYRNAATFAEYNDMNTLRARLQQLALRLGNKAQQAKLQAGQ 438
            +PHR+KILSRIV+YLQQR PN R EW+KK+PLMAKRLEDSLYRNAA+FAEYNDMNTLRARLQ LA RL +KA+  K QAGQ
Sbjct:    1 MPHRRKILSRIVMYLQQRNPNGRLEWVKKIPLMAKRLEDSLYRNAASFAEYNDMNTLRARLQALASRLSHKARHHKQQAGQ 81          
BLAST of jgi.p|Trimin1|151334 vs. uniprot
Match: A0A6H5KPY4_9PHAE (Histone acetyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY4_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 1.120e-30
Identity = 68/93 (73.12%), Postives = 75/93 (80.65%), Query Frame = 1
Query:  163 HLTGG---WQSNNDIPHRKKILSRIVVYLQQRKPNARPEWIKKVPLMAKRLEDSLYRNAATFAEYNDMNTLRARLQQLALRLGNKAQQAKLQA 432
            H TG    WQSNNDIP RK+ILS+IV YLQQRKPNARPEWI+KVPLMAKRLE+SLYRNA +F EY D  TLR RLQQLA RLG  AQQ + +A
Sbjct:  433 HGTGNGLIWQSNNDIPSRKEILSKIVTYLQQRKPNARPEWIQKVPLMAKRLEESLYRNAKSFKEYKDHATLRQRLQQLAARLGTNAQQNRAKA 525          
BLAST of jgi.p|Trimin1|151334 vs. uniprot
Match: K0QZC1_THAOC (Histone acetyltransferase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0QZC1_THAOC)

HSP 1 Score: 108 bits (269), Expect = 7.170e-25
Identity = 56/98 (57.14%), Postives = 75/98 (76.53%), Query Frame = 1
Query:  127 LQLQH----HQQQRVPHLTGGWQSNNDIPHRKKILSRIVVYLQQRKPNARPEWIKKVPLMAKRLEDSLYRNAATFAEYNDMNTLRARLQQLALRLGNK 408
            LQ QH    HQQ+    L GGWQS+ D+  R+K++++IV  L+QRKPNA  EW+ K+P MAKRLE+SLYR+AA+F  YND++TL+ARLQQLA+ +G K
Sbjct:   61 LQQQHQVRAHQQRHPQPLNGGWQSDKDVDDRRKMIAKIVQLLRQRKPNAPAEWLNKLPQMAKRLEESLYRSAASFDAYNDISTLKARLQQLAMNIGMK 158          
BLAST of jgi.p|Trimin1|151334 vs. uniprot
Match: A0A1Z5JQN1_FISSO (Histone acetyltransferase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JQN1_FISSO)

HSP 1 Score: 108 bits (271), Expect = 9.170e-25
Identity = 59/102 (57.84%), Postives = 76/102 (74.51%), Query Frame = 1
Query:  130 QLQHHQQQRVPH--LTGGWQSNNDIPHRKKILSRIVVYLQQRKPNARPEWIKKVPLMAKRLEDSLYRNAATFAEYNDMNTLRARLQQLALRLGNKAQQAKLQ 429
            Q Q  QQQ  PH  L GGWQS+ D   R+K++++IV  LQQRKPNA  EW+KK+P MAKRLE+SLYR+A +F EYND NTL+ RLQQLA+ +G K ++ + Q
Sbjct:   21 QQQPQQQQIFPHQGLNGGWQSDKDYEDRRKMIAKIVHLLQQRKPNAPQEWLKKLPQMAKRLEESLYRSAKSFNEYNDANTLKHRLQQLAVNIGMKTKKLQQQ 122          
BLAST of jgi.p|Trimin1|151334 vs. uniprot
Match: B7FZQ7_PHATC (Histone acetyltransferase n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FZQ7_PHATC)

HSP 1 Score: 108 bits (269), Expect = 1.710e-24
Identity = 57/95 (60.00%), Postives = 70/95 (73.68%), Query Frame = 1
Query:  130 QLQHHQQQRVPH--LTGGWQSNNDIPHRKKILSRIVVYLQQRKPNARPEWIKKVPLMAKRLEDSLYRNAATFAEYNDMNTLRARLQQLALRLGNK 408
            Q Q   QQ  PH  L GGWQS+ D   R+K++++IV  LQQRKPNA  EW+KK+P MAKRLE+SLYR A +F EYND NTL+ RLQQLA+ +G K
Sbjct:   85 QQQAPPQQHFPHQGLNGGWQSDKDYQERRKMIAKIVHLLQQRKPNAPQEWLKKLPQMAKRLEESLYRTATSFEEYNDANTLKHRLQQLAVNIGQK 179          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|151334 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z250_9STRA1.180e-89100.00KIX_2 domain-containing protein (Fragment) n=1 Tax... [more]
A0A835ZBX7_9STRA1.240e-4165.32KIX_2 domain-containing protein (Fragment) n=1 Tax... [more]
A0A835Z470_9STRA7.600e-4180.95KIX_2 domain-containing protein (Fragment) n=1 Tax... [more]
A0A835Z5N2_9STRA1.910e-3470.79KIX_2 domain-containing protein n=1 Tax=Tribonema ... [more]
D8LPT8_ECTSI1.160e-3281.25KIX_2 domain-containing protein (Fragment) n=1 Tax... [more]
A0A836CHH1_9STRA1.730e-3179.01Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5KPY4_9PHAE1.120e-3073.12Histone acetyltransferase n=1 Tax=Ectocarpus sp. C... [more]
K0QZC1_THAOC7.170e-2557.14Histone acetyltransferase n=1 Tax=Thalassiosira oc... [more]
A0A1Z5JQN1_FISSO9.170e-2557.84Histone acetyltransferase n=2 Tax=Fistulifera sola... [more]
B7FZQ7_PHATC1.710e-2460.00Histone acetyltransferase n=1 Tax=Phaeodactylum tr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_20contigContig_20:760790..761569 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|151334|gw1.20.223.1
Max annot lvl2759|Eukaryota
EggNOG OGs2CNEQ@1|root,2QVQU@2759|Eukaryota
Evalue1.9e-33
Seed ortholog2880.D8LPT8
Hectar predicted targeting categoryother localisation
TranscriptId151656
TrackFilteredModels1
ProteinId151334
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|151334gene_4135Tribonema minus UTEX_B_3156 geneContig_20 760790..761569 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|151334Trimin1|151334|gw1.20.223.1Tribonema minus UTEX_B_3156 polypeptideContig_20 760790..761569 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4135_2exon_4135_2Tribonema minus UTEX_B_3156 exonContig_20 760790..761074 -
exon_4135_1exon_4135_1Tribonema minus UTEX_B_3156 exonContig_20 761417..761569 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4135CDS_4135Tribonema minus UTEX_B_3156 CDSContig_20 761417..761569 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4135 ID=mRNA_4135|Name=jgi.p|Trimin1|151334|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=438bp|location=Sequence derived from alignment at Contig_20:760790..761569- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGCAGCAGCAGCAGCAGCTGCTGCAGCACCAGCAGCTGCAGGCGCACCT
CCTGCAGCAGCAGGCGGCGCAGCACGCACCCGGCGCGCTGCCGACTGCGC
AGCCCGCGCTGCCGGCGGCCGCGGTCCTGCAGCTTCAACATCACCAGCAA
CAACGCGTGCCGCACCTGACCGGCGGGTGGCAGTCGAACAACGACATACC
GCACCGCAAGAAGATCCTGTCGCGCATCGTCGTGTACCTGCAGCAGCGCA
AGCCGAACGCGCGCCCGGAGTGGATCAAGAAGGTGCCGCTCATGGCCAAG
CGCCTCGAGGACTCGCTGTACCGCAACGCCGCGACGTTCGCCGAGTACAA
CGACATGAACACGCTGCGCGCGCGCCTGCAGCAGCTCGCGCTGCGCCTCG
GCAACAAGGCGCAGCAGGCCAAGCTGCAGGCCGGCCAG
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protein sequence of jgi.p|Trimin1|151334

>Trimin1|151334|gw1.20.223.1 ID=Trimin1|151334|gw1.20.223.1|Name=jgi.p|Trimin1|151334|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=146bp
QQQQQQLLQHQQLQAHLLQQQAAQHAPGALPTAQPALPAAAVLQLQHHQQ
QRVPHLTGGWQSNNDIPHRKKILSRIVVYLQQRKPNARPEWIKKVPLMAK
RLEDSLYRNAATFAEYNDMNTLRARLQQLALRLGNKAQQAKLQAGQ
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mRNA from alignment at Contig_20:760790..761569-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4135 ID=mRNA_4135|Name=jgi.p|Trimin1|151334|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=780bp|location=Sequence derived from alignment at Contig_20:760790..761569- (Tribonema minus UTEX_B_3156 )
CAGCAGCAGCAGCAGCAGCTGCTGCAGCACCAGCAGCTGCAGGCGCACCT CCTGCAGCAGCAGGCGGCGCAGCACGCACCCGGCGCGCTGCCGACTGCGC AGCCCGCGCTGCCGGCGGCCGCGGTCCTGCAGCTTCAACATCACCAGCAA CAAGTGGCGGCGGCGGCGGCAGCGGCGCCAGATGCGCCCGCGGTGGCGGC GGGCTTACAGGCGCCGGCAGCGGCACCTGCTGCCGTGCCGCCGGGCGTGC CACCAGGCATGGCGCCTTCACCAGGAGCAGACCCCGCCGTCTTCGGCGCG CCACTGCTGCAGCAGCAGCAGGTGCAGGCGGCGGCGCTGCCGGGAGCGCC GGCAGCAGCGCTCGGCCTGCCGCTGCTGCCTGAGCAGGCGGCGGACGGTG CAGCGGCGCCGGTCGCGCCGGCGGGCGCAGCACCTGCGGCGGCAGCGGCA GCGGCGGCGGCGGCGGCAGCGGCGGCGGGGGGGGGCCCGCCGCAGCGCGT GCCGCACCTGACCGGCGGGTGGCAGTCGAACAACGACATACCGCACCGCA AGAAGATCCTGTCGCGCATCGTCGTGTACCTGCAGCAGCGCAAGCCGAAC GCGCGCCCGGAGTGGATCAAGAAGGTGCCGCTCATGGCCAAGCGCCTCGA GGACTCGCTGTACCGCAACGCCGCGACGTTCGCCGAGTACAACGACATGA ACACGCTGCGCGCGCGCCTGCAGCAGCTCGCGCTGCGCCTCGGCAACAAG GCGCAGCAGGCCAAGCTGCAGGCCGGCCAG
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Coding sequence (CDS) from alignment at Contig_20:760790..761569-

>mRNA_4135 ID=mRNA_4135|Name=jgi.p|Trimin1|151334|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=438bp|location=Sequence derived from alignment at Contig_20:760790..761569- (Tribonema minus UTEX_B_3156 )
CAGCAGCAGCAGCAGCAGCTGCTGCAGCACCAGCAGCTGCAGGCGCACCT
CCTGCAGCAGCAGGCGGCGCAGCACGCACCCGGCGCGCTGCCGACTGCGC
AGCCCGCGCTGCCGGCGGCCGCGGTCCTGCAGCTTCAACATCACCAGCAA
CAACGCGTGCCGCACCTGACCGGCGGGTGGCAGTCGAACAACGACATACC
GCACCGCAAGAAGATCCTGTCGCGCATCGTCGTGTACCTGCAGCAGCGCA
AGCCGAACGCGCGCCCGGAGTGGATCAAGAAGGTGCCGCTCATGGCCAAG
CGCCTCGAGGACTCGCTGTACCGCAACGCCGCGACGTTCGCCGAGTACAA
CGACATGAACACGCTGCGCGCGCGCCTGCAGCAGCTCGCGCTGCGCCTCG
GCAACAAGGCGCAGCAGGCCAAGCTGCAGGCCGGCCAG
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