mRNA_4131 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|151199
Unique NamemRNA_4131
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|151199 vs. uniprot
Match: A0A835Z470_9STRA (KIX_2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z470_9STRA)

HSP 1 Score: 174 bits (440), Expect = 3.540e-55
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1
Query:    1 QRVAPLTGGWQSDDDVPHRRKILSRIVLYLHQRRPNAHPEWVEKVPLMAKRLEDALYRDAASFAEYNDMSTLRARLQQLALRLG 252
            QRVAPLTGGWQSDDDVPHRRKILSRIVLYLHQRRPNAHPEWVEKVPLMAKRLEDALYRDAASFAEYNDMSTLRARLQQLALRLG
Sbjct:    1 QRVAPLTGGWQSDDDVPHRRKILSRIVLYLHQRRPNAHPEWVEKVPLMAKRLEDALYRDAASFAEYNDMSTLRARLQQLALRLG 84          
BLAST of jgi.p|Trimin1|151199 vs. uniprot
Match: A0A835Z250_9STRA (KIX_2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z250_9STRA)

HSP 1 Score: 147 bits (371), Expect = 7.970e-44
Identity = 68/84 (80.95%), Postives = 80/84 (95.24%), Query Frame = 1
Query:    1 QRVAPLTGGWQSDDDVPHRRKILSRIVLYLHQRRPNAHPEWVEKVPLMAKRLEDALYRDAASFAEYNDMSTLRARLQQLALRLG 252
            QRV  LTGGWQS++D+PHR+KILSRIV+YL QR+PNA PEW++KVPLMAKRLED+LYR+AA+FAEYNDM+TLRARLQQLALRLG
Sbjct:   51 QRVPHLTGGWQSNNDIPHRKKILSRIVVYLQQRKPNARPEWIKKVPLMAKRLEDSLYRNAATFAEYNDMNTLRARLQQLALRLG 134          
BLAST of jgi.p|Trimin1|151199 vs. uniprot
Match: A0A835Z5N2_9STRA (KIX_2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5N2_9STRA)

HSP 1 Score: 129 bits (325), Expect = 1.830e-37
Identity = 60/81 (74.07%), Postives = 70/81 (86.42%), Query Frame = 1
Query:   10 APLTGGWQSDDDVPHRRKILSRIVLYLHQRRPNAHPEWVEKVPLMAKRLEDALYRDAASFAEYNDMSTLRARLQQLALRLG 252
            APLTG WQ++DD+PHR+KILSRI++YL Q R N  PEW++KVPLMA+RLED LYRDAASFAEYNDM+TLR RLQ LA RL 
Sbjct:    6 APLTGRWQANDDMPHRKKILSRILVYLRQHRRNVRPEWIKKVPLMAQRLEDTLYRDAASFAEYNDMNTLRTRLQALASRLS 86          
BLAST of jgi.p|Trimin1|151199 vs. uniprot
Match: A0A835ZBX7_9STRA (KIX_2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBX7_9STRA)

HSP 1 Score: 124 bits (311), Expect = 6.260e-35
Identity = 59/84 (70.24%), Postives = 69/84 (82.14%), Query Frame = 1
Query:    1 QRVAPLTGGWQSDDDVPHRRKILSRIVLYLHQRRPNAHPEWVEKVPLMAKRLEDALYRDAASFAEYNDMSTLRARLQQLALRLG 252
            QR+  LT  WQS+ D  HRRKILSR+VLYL QR+PNA PEW+ +VP  A+RLE++LYR AA+FAEYNDM TL ARLQQLALRLG
Sbjct:   35 QRMTHLTSRWQSNQDRAHRRKILSRVVLYLQQRKPNARPEWIREVPRTAQRLENSLYRKAATFAEYNDMKTLHARLQQLALRLG 118          
BLAST of jgi.p|Trimin1|151199 vs. uniprot
Match: D8LPT8_ECTSI (KIX_2 domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPT8_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 7.720e-30
Identity = 53/75 (70.67%), Postives = 65/75 (86.67%), Query Frame = 1
Query:   28 WQSDDDVPHRRKILSRIVLYLHQRRPNAHPEWVEKVPLMAKRLEDALYRDAASFAEYNDMSTLRARLQQLALRLG 252
            WQS++D+P R++ILS+IV YL QR+PNA PEW++KVPLMAKRLED+LYR+A SF EY D +TLR RLQQLA RLG
Sbjct:   54 WQSNNDIPSRKEILSKIVTYLQQRKPNARPEWIQKVPLMAKRLEDSLYRNAKSFQEYKDHATLRQRLQQLAARLG 128          
BLAST of jgi.p|Trimin1|151199 vs. uniprot
Match: A0A836CHH1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHH1_9STRA)

HSP 1 Score: 112 bits (280), Expect = 5.610e-28
Identity = 54/69 (78.26%), Postives = 61/69 (88.41%), Query Frame = 1
Query:   46 VPHRRKILSRIVLYLHQRRPNAHPEWVEKVPLMAKRLEDALYRDAASFAEYNDMSTLRARLQQLALRLG 252
            +PHRRKILSRIV+YL QR PN   EWV+K+PLMAKRLED+LYR+AASFAEYNDM+TLRARLQ LA RL 
Sbjct:    1 MPHRRKILSRIVMYLQQRNPNGRLEWVKKIPLMAKRLEDSLYRNAASFAEYNDMNTLRARLQALASRLS 69          
BLAST of jgi.p|Trimin1|151199 vs. uniprot
Match: A0A6H5KPY4_9PHAE (Histone acetyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY4_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 7.750e-28
Identity = 52/75 (69.33%), Postives = 65/75 (86.67%), Query Frame = 1
Query:   28 WQSDDDVPHRRKILSRIVLYLHQRRPNAHPEWVEKVPLMAKRLEDALYRDAASFAEYNDMSTLRARLQQLALRLG 252
            WQS++D+P R++ILS+IV YL QR+PNA PEW++KVPLMAKRLE++LYR+A SF EY D +TLR RLQQLA RLG
Sbjct:  441 WQSNNDIPSRKEILSKIVTYLQQRKPNARPEWIQKVPLMAKRLEESLYRNAKSFKEYKDHATLRQRLQQLAARLG 515          
BLAST of jgi.p|Trimin1|151199 vs. uniprot
Match: K0QZC1_THAOC (Histone acetyltransferase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0QZC1_THAOC)

HSP 1 Score: 112 bits (280), Expect = 1.900e-27
Identity = 52/80 (65.00%), Postives = 65/80 (81.25%), Query Frame = 1
Query:   13 PLTGGWQSDDDVPHRRKILSRIVLYLHQRRPNAHPEWVEKVPLMAKRLEDALYRDAASFAEYNDMSTLRARLQQLALRLG 252
            PL GGWQSD DV  RRK++++IV  L QR+PNA  EW+ K+P MAKRLE++LYR AASF  YND+STL+ARLQQLA+ +G
Sbjct:   77 PLNGGWQSDKDVDDRRKMIAKIVQLLRQRKPNAPAEWLNKLPQMAKRLEESLYRSAASFDAYNDISTLKARLQQLAMNIG 156          
BLAST of jgi.p|Trimin1|151199 vs. uniprot
Match: A0A7S2UKV4_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UKV4_9STRA)

HSP 1 Score: 106 bits (265), Expect = 5.220e-25
Identity = 49/79 (62.03%), Postives = 63/79 (79.75%), Query Frame = 1
Query:   16 LTGGWQSDDDVPHRRKILSRIVLYLHQRRPNAHPEWVEKVPLMAKRLEDALYRDAASFAEYNDMSTLRARLQQLALRLG 252
            L GGWQSD DV  RRK++++IV  L QR+PNA  EW++K+P MAKRLE++LYR A SF  YND+STL+ RLQQLA+ +G
Sbjct:  119 LNGGWQSDKDVEDRRKMIAKIVHLLRQRKPNAPQEWLQKLPQMAKRLEESLYRSAPSFEAYNDISTLKQRLQQLAMNIG 197          
BLAST of jgi.p|Trimin1|151199 vs. uniprot
Match: A0A7S2VVC1_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2VVC1_9STRA)

HSP 1 Score: 106 bits (265), Expect = 5.250e-25
Identity = 49/79 (62.03%), Postives = 63/79 (79.75%), Query Frame = 1
Query:   16 LTGGWQSDDDVPHRRKILSRIVLYLHQRRPNAHPEWVEKVPLMAKRLEDALYRDAASFAEYNDMSTLRARLQQLALRLG 252
            L GGWQSD DV  RRK++++IV  L QR+PNA  EW++K+P MAKRLE++LYR AA F  YND+STL+ RLQQLA+ +G
Sbjct:   24 LNGGWQSDKDVTARRKMIAKIVALLQQRKPNAPEEWLKKLPQMAKRLEESLYRSAADFNSYNDVSTLKQRLQQLAMSIG 102          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|151199 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z470_9STRA3.540e-55100.00KIX_2 domain-containing protein (Fragment) n=1 Tax... [more]
A0A835Z250_9STRA7.970e-4480.95KIX_2 domain-containing protein (Fragment) n=1 Tax... [more]
A0A835Z5N2_9STRA1.830e-3774.07KIX_2 domain-containing protein n=1 Tax=Tribonema ... [more]
A0A835ZBX7_9STRA6.260e-3570.24KIX_2 domain-containing protein (Fragment) n=1 Tax... [more]
D8LPT8_ECTSI7.720e-3070.67KIX_2 domain-containing protein (Fragment) n=1 Tax... [more]
A0A836CHH1_9STRA5.610e-2878.26Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5KPY4_9PHAE7.750e-2869.33Histone acetyltransferase n=1 Tax=Ectocarpus sp. C... [more]
K0QZC1_THAOC1.900e-2765.00Histone acetyltransferase n=1 Tax=Thalassiosira oc... [more]
A0A7S2UKV4_9STRA5.220e-2562.03Histone acetyltransferase (Fragment) n=1 Tax=Atthe... [more]
A0A7S2VVC1_9STRA5.250e-2562.03Histone acetyltransferase (Fragment) n=1 Tax=Tripa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_20contigContig_20:738031..738282 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|151199|gw1.20.219.1
Max annot lvl2759|Eukaryota
EggNOG OGs2CNEQ@1|root,2QVQU@2759|Eukaryota
Evalue1.26e-30
Seed ortholog2880.D8LPT8
Hectar predicted targeting categoryother localisation
TranscriptId151521
TrackFilteredModels1
ProteinId151199
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|151199gene_4131Tribonema minus UTEX_B_3156 geneContig_20 738031..738282 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4131_1exon_4131_1Tribonema minus UTEX_B_3156 exonContig_20 738031..738282 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4131CDS_4131Tribonema minus UTEX_B_3156 CDSContig_20 738031..738282 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|151199Trimin1|151199|gw1.20.219.1Tribonema minus UTEX_B_3156 polypeptideContig_20 738031..738282 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4131 ID=mRNA_4131|Name=jgi.p|Trimin1|151199|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=252bp|location=Sequence derived from alignment at Contig_20:738031..738282+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGCGCGTGGCGCCTCTGACCGGCGGGTGGCAGTCGGACGACGACGTGCC
GCACCGCAGGAAGATCCTGTCGCGCATCGTCCTGTACCTGCACCAGCGCA
GGCCGAACGCGCACCCGGAGTGGGTTGAGAAGGTGCCGCTCATGGCCAAG
CGCCTCGAGGACGCGCTGTACCGCGACGCCGCGTCGTTCGCCGAGTACAA
CGACATGAGCACGCTGCGCGCGCGCCTGCAGCAGCTCGCGCTGCGCCTCG
GC
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protein sequence of jgi.p|Trimin1|151199

>Trimin1|151199|gw1.20.219.1 ID=Trimin1|151199|gw1.20.219.1|Name=jgi.p|Trimin1|151199|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=84bp
QRVAPLTGGWQSDDDVPHRRKILSRIVLYLHQRRPNAHPEWVEKVPLMAK
RLEDALYRDAASFAEYNDMSTLRARLQQLALRLG
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mRNA from alignment at Contig_20:738031..738282+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4131 ID=mRNA_4131|Name=jgi.p|Trimin1|151199|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=252bp|location=Sequence derived from alignment at Contig_20:738031..738282+ (Tribonema minus UTEX_B_3156 )
CAGCGCGTGGCGCCTCTGACCGGCGGGTGGCAGTCGGACGACGACGTGCC GCACCGCAGGAAGATCCTGTCGCGCATCGTCCTGTACCTGCACCAGCGCA GGCCGAACGCGCACCCGGAGTGGGTTGAGAAGGTGCCGCTCATGGCCAAG CGCCTCGAGGACGCGCTGTACCGCGACGCCGCGTCGTTCGCCGAGTACAA CGACATGAGCACGCTGCGCGCGCGCCTGCAGCAGCTCGCGCTGCGCCTCG GC
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Coding sequence (CDS) from alignment at Contig_20:738031..738282+

>mRNA_4131 ID=mRNA_4131|Name=jgi.p|Trimin1|151199|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=252bp|location=Sequence derived from alignment at Contig_20:738031..738282+ (Tribonema minus UTEX_B_3156 )
CAGCGCGTGGCGCCTCTGACCGGCGGGTGGCAGTCGGACGACGACGTGCC
GCACCGCAGGAAGATCCTGTCGCGCATCGTCCTGTACCTGCACCAGCGCA
GGCCGAACGCGCACCCGGAGTGGGTTGAGAAGGTGCCGCTCATGGCCAAG
CGCCTCGAGGACGCGCTGTACCGCGACGCCGCGTCGTTCGCCGAGTACAA
CGACATGAGCACGCTGCGCGCGCGCCTGCAGCAGCTCGCGCTGCGCCTCG
GC
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