mRNA_4131 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|151199 vs. uniprot
Match: A0A835Z470_9STRA (KIX_2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z470_9STRA) HSP 1 Score: 174 bits (440), Expect = 3.540e-55 Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1 Query: 1 QRVAPLTGGWQSDDDVPHRRKILSRIVLYLHQRRPNAHPEWVEKVPLMAKRLEDALYRDAASFAEYNDMSTLRARLQQLALRLG 252 QRVAPLTGGWQSDDDVPHRRKILSRIVLYLHQRRPNAHPEWVEKVPLMAKRLEDALYRDAASFAEYNDMSTLRARLQQLALRLG Sbjct: 1 QRVAPLTGGWQSDDDVPHRRKILSRIVLYLHQRRPNAHPEWVEKVPLMAKRLEDALYRDAASFAEYNDMSTLRARLQQLALRLG 84
BLAST of jgi.p|Trimin1|151199 vs. uniprot
Match: A0A835Z250_9STRA (KIX_2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z250_9STRA) HSP 1 Score: 147 bits (371), Expect = 7.970e-44 Identity = 68/84 (80.95%), Postives = 80/84 (95.24%), Query Frame = 1 Query: 1 QRVAPLTGGWQSDDDVPHRRKILSRIVLYLHQRRPNAHPEWVEKVPLMAKRLEDALYRDAASFAEYNDMSTLRARLQQLALRLG 252 QRV LTGGWQS++D+PHR+KILSRIV+YL QR+PNA PEW++KVPLMAKRLED+LYR+AA+FAEYNDM+TLRARLQQLALRLG Sbjct: 51 QRVPHLTGGWQSNNDIPHRKKILSRIVVYLQQRKPNARPEWIKKVPLMAKRLEDSLYRNAATFAEYNDMNTLRARLQQLALRLG 134
BLAST of jgi.p|Trimin1|151199 vs. uniprot
Match: A0A835Z5N2_9STRA (KIX_2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5N2_9STRA) HSP 1 Score: 129 bits (325), Expect = 1.830e-37 Identity = 60/81 (74.07%), Postives = 70/81 (86.42%), Query Frame = 1 Query: 10 APLTGGWQSDDDVPHRRKILSRIVLYLHQRRPNAHPEWVEKVPLMAKRLEDALYRDAASFAEYNDMSTLRARLQQLALRLG 252 APLTG WQ++DD+PHR+KILSRI++YL Q R N PEW++KVPLMA+RLED LYRDAASFAEYNDM+TLR RLQ LA RL Sbjct: 6 APLTGRWQANDDMPHRKKILSRILVYLRQHRRNVRPEWIKKVPLMAQRLEDTLYRDAASFAEYNDMNTLRTRLQALASRLS 86
BLAST of jgi.p|Trimin1|151199 vs. uniprot
Match: A0A835ZBX7_9STRA (KIX_2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBX7_9STRA) HSP 1 Score: 124 bits (311), Expect = 6.260e-35 Identity = 59/84 (70.24%), Postives = 69/84 (82.14%), Query Frame = 1 Query: 1 QRVAPLTGGWQSDDDVPHRRKILSRIVLYLHQRRPNAHPEWVEKVPLMAKRLEDALYRDAASFAEYNDMSTLRARLQQLALRLG 252 QR+ LT WQS+ D HRRKILSR+VLYL QR+PNA PEW+ +VP A+RLE++LYR AA+FAEYNDM TL ARLQQLALRLG Sbjct: 35 QRMTHLTSRWQSNQDRAHRRKILSRVVLYLQQRKPNARPEWIREVPRTAQRLENSLYRKAATFAEYNDMKTLHARLQQLALRLG 118
BLAST of jgi.p|Trimin1|151199 vs. uniprot
Match: D8LPT8_ECTSI (KIX_2 domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPT8_ECTSI) HSP 1 Score: 116 bits (290), Expect = 7.720e-30 Identity = 53/75 (70.67%), Postives = 65/75 (86.67%), Query Frame = 1 Query: 28 WQSDDDVPHRRKILSRIVLYLHQRRPNAHPEWVEKVPLMAKRLEDALYRDAASFAEYNDMSTLRARLQQLALRLG 252 WQS++D+P R++ILS+IV YL QR+PNA PEW++KVPLMAKRLED+LYR+A SF EY D +TLR RLQQLA RLG Sbjct: 54 WQSNNDIPSRKEILSKIVTYLQQRKPNARPEWIQKVPLMAKRLEDSLYRNAKSFQEYKDHATLRQRLQQLAARLG 128
BLAST of jgi.p|Trimin1|151199 vs. uniprot
Match: A0A836CHH1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHH1_9STRA) HSP 1 Score: 112 bits (280), Expect = 5.610e-28 Identity = 54/69 (78.26%), Postives = 61/69 (88.41%), Query Frame = 1 Query: 46 VPHRRKILSRIVLYLHQRRPNAHPEWVEKVPLMAKRLEDALYRDAASFAEYNDMSTLRARLQQLALRLG 252 +PHRRKILSRIV+YL QR PN EWV+K+PLMAKRLED+LYR+AASFAEYNDM+TLRARLQ LA RL Sbjct: 1 MPHRRKILSRIVMYLQQRNPNGRLEWVKKIPLMAKRLEDSLYRNAASFAEYNDMNTLRARLQALASRLS 69
BLAST of jgi.p|Trimin1|151199 vs. uniprot
Match: A0A6H5KPY4_9PHAE (Histone acetyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY4_9PHAE) HSP 1 Score: 114 bits (286), Expect = 7.750e-28 Identity = 52/75 (69.33%), Postives = 65/75 (86.67%), Query Frame = 1 Query: 28 WQSDDDVPHRRKILSRIVLYLHQRRPNAHPEWVEKVPLMAKRLEDALYRDAASFAEYNDMSTLRARLQQLALRLG 252 WQS++D+P R++ILS+IV YL QR+PNA PEW++KVPLMAKRLE++LYR+A SF EY D +TLR RLQQLA RLG Sbjct: 441 WQSNNDIPSRKEILSKIVTYLQQRKPNARPEWIQKVPLMAKRLEESLYRNAKSFKEYKDHATLRQRLQQLAARLG 515
BLAST of jgi.p|Trimin1|151199 vs. uniprot
Match: K0QZC1_THAOC (Histone acetyltransferase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0QZC1_THAOC) HSP 1 Score: 112 bits (280), Expect = 1.900e-27 Identity = 52/80 (65.00%), Postives = 65/80 (81.25%), Query Frame = 1 Query: 13 PLTGGWQSDDDVPHRRKILSRIVLYLHQRRPNAHPEWVEKVPLMAKRLEDALYRDAASFAEYNDMSTLRARLQQLALRLG 252 PL GGWQSD DV RRK++++IV L QR+PNA EW+ K+P MAKRLE++LYR AASF YND+STL+ARLQQLA+ +G Sbjct: 77 PLNGGWQSDKDVDDRRKMIAKIVQLLRQRKPNAPAEWLNKLPQMAKRLEESLYRSAASFDAYNDISTLKARLQQLAMNIG 156
BLAST of jgi.p|Trimin1|151199 vs. uniprot
Match: A0A7S2UKV4_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UKV4_9STRA) HSP 1 Score: 106 bits (265), Expect = 5.220e-25 Identity = 49/79 (62.03%), Postives = 63/79 (79.75%), Query Frame = 1 Query: 16 LTGGWQSDDDVPHRRKILSRIVLYLHQRRPNAHPEWVEKVPLMAKRLEDALYRDAASFAEYNDMSTLRARLQQLALRLG 252 L GGWQSD DV RRK++++IV L QR+PNA EW++K+P MAKRLE++LYR A SF YND+STL+ RLQQLA+ +G Sbjct: 119 LNGGWQSDKDVEDRRKMIAKIVHLLRQRKPNAPQEWLQKLPQMAKRLEESLYRSAPSFEAYNDISTLKQRLQQLAMNIG 197
BLAST of jgi.p|Trimin1|151199 vs. uniprot
Match: A0A7S2VVC1_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2VVC1_9STRA) HSP 1 Score: 106 bits (265), Expect = 5.250e-25 Identity = 49/79 (62.03%), Postives = 63/79 (79.75%), Query Frame = 1 Query: 16 LTGGWQSDDDVPHRRKILSRIVLYLHQRRPNAHPEWVEKVPLMAKRLEDALYRDAASFAEYNDMSTLRARLQQLALRLG 252 L GGWQSD DV RRK++++IV L QR+PNA EW++K+P MAKRLE++LYR AA F YND+STL+ RLQQLA+ +G Sbjct: 24 LNGGWQSDKDVTARRKMIAKIVALLQQRKPNAPEEWLKKLPQMAKRLEESLYRSAADFNSYNDVSTLKQRLQQLAMSIG 102 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|151199 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_4131 ID=mRNA_4131|Name=jgi.p|Trimin1|151199|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=252bp|location=Sequence derived from alignment at Contig_20:738031..738282+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CAGCGCGTGGCGCCTCTGACCGGCGGGTGGCAGTCGGACGACGACGTGCCback to top protein sequence of jgi.p|Trimin1|151199 >Trimin1|151199|gw1.20.219.1 ID=Trimin1|151199|gw1.20.219.1|Name=jgi.p|Trimin1|151199|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=84bp QRVAPLTGGWQSDDDVPHRRKILSRIVLYLHQRRPNAHPEWVEKVPLMAKback to top mRNA from alignment at Contig_20:738031..738282+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_4131 ID=mRNA_4131|Name=jgi.p|Trimin1|151199|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=252bp|location=Sequence derived from alignment at Contig_20:738031..738282+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_20:738031..738282+ >mRNA_4131 ID=mRNA_4131|Name=jgi.p|Trimin1|151199|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=252bp|location=Sequence derived from alignment at Contig_20:738031..738282+ (Tribonema minus UTEX_B_3156 )back to top |