mRNA_4129 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|150174
Unique NamemRNA_4129
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|150174 vs. uniprot
Match: A0A836CJU7_9STRA (CheY-like superfamily protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJU7_9STRA)

HSP 1 Score: 226 bits (575), Expect = 5.920e-75
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1
Query:    1 ALVIDDTGSVRKLLCKVLESKGLRCDVARNGLEGLQTMRTRRYSVVLCDAFMPVMSGMECIQRFRQWEGVHRAEQPRQFIVGISSYLEGFDRDSGAIDAFLSKPIDLKWL 330
            ALVIDDTGSVRKLLCKVLESKGLRCDVARNGLEGLQTMRTRRYSVVLCDAFMPVMSGMECIQRFRQWEGVHRAEQPRQFIVGISSYLEGFDRDSGAIDAFLSKPIDLKWL
Sbjct:    1 ALVIDDTGSVRKLLCKVLESKGLRCDVARNGLEGLQTMRTRRYSVVLCDAFMPVMSGMECIQRFRQWEGVHRAEQPRQFIVGISSYLEGFDRDSGAIDAFLSKPIDLKWL 110          
BLAST of jgi.p|Trimin1|150174 vs. uniprot
Match: A0A835Z8X6_9STRA (CheY-like superfamily protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8X6_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 2.000e-20
Identity = 51/113 (45.13%), Postives = 69/113 (61.06%), Query Frame = 1
Query:    4 LVIDDTGSVRKLLCKVLESKGLRCDVARNGLEGLQTMRTRRYSVVLCDAFMPVMSGMECIQRFRQWEGVHRAEQPRQFIVGISSYLEGFDRD----SGAIDAFLSKPIDLKWL 330
            LVIDDT SVR L+ K L+  G   + A NGL+GL+ ++ ++Y++V+ D  MPV+ G+EC+QRFR WE        RQ I+  S+  E  D D    SGA D FL KP+ L  L
Sbjct:    6 LVIDDTKSVRTLVGKALDWWGFDIEYATNGLQGLEALKKQQYALVITDLQMPVLDGLECVQRFRAWEW------QRQIILATSANCEAADMDLCIDSGA-DGFLPKPLSLSLL 111          
BLAST of jgi.p|Trimin1|150174 vs. uniprot
Match: B7FUD4_PHATC (Light histidine kinase n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FUD4_PHATC)

HSP 1 Score: 93.2 bits (230), Expect = 7.780e-20
Identity = 49/113 (43.36%), Postives = 71/113 (62.83%), Query Frame = 1
Query:    1 ALVIDDTGSVRKLLCKVLESKGLRCDVARNGLEGLQTMRTRRYSVVLCDAFMPVMSGMECIQRFRQWEGVHRAEQPRQFIVGISSYLEGFDRDSG---AIDAFLSKPIDLKWL 330
            ALVIDD+  VRK L + L S G   + A +G+EGL  ++ R YSV LCD  MP+M G++C+Q++R WE  +R    RQ IVGIS++    D +      +D +++KPI +K L
Sbjct:  533 ALVIDDSLVVRKTLVRGLSSLGYEVETASDGMEGLNALKKRIYSVCLCDFLMPIMDGLDCVQQYRVWEAEYRFSH-RQIIVGISAHATKKDSNIARQIGMDDYMAKPITIKML 644          
BLAST of jgi.p|Trimin1|150174 vs. uniprot
Match: A0A6U2J5A7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A6U2J5A7_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 9.890e-19
Identity = 44/107 (41.12%), Postives = 70/107 (65.42%), Query Frame = 1
Query:    1 ALVIDDTGSVRKLLCKVLESKGLRCDVARNGLEGLQTMRTRRYSVVLCDAFMPVMSGMECIQRFRQWEGVHRAEQPRQFIVGISSYLEGFD----RDSGAIDAFLSK 309
            ALVIDD+   R  + + L + G R D A +G+EGL+++++ RY VV CD  +PVM G++C++R+R+WE  HR +   Q I+G+S +    D    +D+G +D F+SK
Sbjct:   77 ALVIDDSVVTRASVGRALRNMGFRVDAAVDGMEGLKSLQSARYDVVFCDFLLPVMDGIDCVKRYREWESTHRPKF-HQRIIGLSEHDSAADVKQGKDAG-MDDFVSK 181          
BLAST of jgi.p|Trimin1|150174 vs. uniprot
Match: A0A7S0Z3C2_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0Z3C2_9CRYP)

HSP 1 Score: 85.9 bits (211), Expect = 2.780e-17
Identity = 50/114 (43.86%), Postives = 67/114 (58.77%), Query Frame = 1
Query:    4 LVIDDTGSVRKLLCKVLESKGLRCDVARNGLEGLQTMRTRRYSVVLCDAFMPVMSGMECIQRFRQWE-GVHRAEQPRQFIVGISSYLEGFD----RDSGAIDAFLSKPIDLKWL 330
            L+I+D    R+L+ K LE +      A NG EGL+ ++  RYS+VLCD  MPVM G+ECI+RFRQWE G    E   QF+  +S+  E  D    R+ G  D F  KP+ +K L
Sbjct:  482 LLIEDDVPTRRLMTKALEKQKFSVVQAGNGEEGLEKLKESRYSMVLCDIMMPVMDGVECIRRFRQWEQGQASREGGEQFVCALSANTEASDVEKTRNVGMND-FFPKPVKIKEL 594          
BLAST of jgi.p|Trimin1|150174 vs. uniprot
Match: A0A7S1DHP0_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DHP0_HEMAN)

HSP 1 Score: 85.5 bits (210), Expect = 3.840e-17
Identity = 48/114 (42.11%), Postives = 70/114 (61.40%), Query Frame = 1
Query:    4 LVIDDTGSVRKLLCKVLESKGLRCDVARNGLEGLQTMRTRRYSVVLCDAFMPVMSGMECIQRFRQWEGVHRAEQP-RQFIVGISSYLEGFD----RDSGAIDAFLSKPIDLKWL 330
            L+I+D  S RKL+ K LE +G     A NG+EGL+ ++ +R+++VLCD  MPVM G+EC +RFRQWE    +     Q+I  +S+  E  D    RD G +D F  KP+ ++ L
Sbjct:  563 LLIEDDVSTRKLMTKGLEKQGYTVVQAGNGVEGLEKLQEQRFNMVLCDIMMPVMDGVECTRRFRQWEKQQSSRSGGAQYICALSANTEASDVAKTRDVG-MDDFFPKPVKIQEL 675          
BLAST of jgi.p|Trimin1|150174 vs. uniprot
Match: A0A2R5H3B4_9STRA (Hybrid signal transduction histidine kinase K n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5H3B4_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.160e-15
Identity = 44/104 (42.31%), Postives = 66/104 (63.46%), Query Frame = 1
Query:    4 LVIDDTGSVRKLLCKVLESKGLRCDVARNGLEGLQTMRTRRYSVVLCDAFMPVMSGMECIQRFRQWEGVHRAEQPRQFIVGISSYLEGFDRDSGAIDAFLSKPI 315
            L+I+D    +KLL K L++      VA +G+EGL+ ++ R YS+VLCD  MP M+G  CI++FR+WE  +R E  RQF+ G+S+  EG   +    D ++ KPI
Sbjct:  492 LIIEDEIVQQKLLTKQLQNLSYEVFVANDGVEGLEALKERPYSLVLCDKLMPRMNGDVCIRQFRRWESSNR-EDNRQFVCGLSATKEGALPEG--FDLYMPKPI 592          
BLAST of jgi.p|Trimin1|150174 vs. uniprot
Match: A0A7S3YBA8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YBA8_HETAK)

HSP 1 Score: 80.5 bits (197), Expect = 1.860e-15
Identity = 43/116 (37.07%), Postives = 65/116 (56.03%), Query Frame = 1
Query:    1 ALVIDDTGSVRKLLCKVLESKGLRCDVARNGLEGLQTMRTRRYSVVLCDAFMPVMSGMECIQRFRQW---EGVHRAEQPRQFIVGISSYLEGFDRDSG---AIDAFLSKPIDLKWL 330
            ALV+DD  ++RK+L  VL+ +    D A +G +G + ++   Y +V CD  MP++SG +CIQ+FR W   EGV  A  P  F VGIS+     D   G    +  + +KP+  + L
Sbjct:  169 ALVVDDNRTIRKMLKMVLDKQDCEVDTANDGRQGFEALKAAPYDLVFCDFLMPILSGPDCIQKFRSWRWAEGVETAPNP--FTVGISANASVADSAKGLEAGMHLYTAKPVKAQLL 282          
BLAST of jgi.p|Trimin1|150174 vs. uniprot
Match: F0Y7I5_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y7I5_AURAN)

HSP 1 Score: 76.3 bits (186), Expect = 6.720e-14
Identity = 41/113 (36.28%), Postives = 66/113 (58.41%), Query Frame = 1
Query:    1 ALVIDDTGSVRKLLCKVLESKGLRCDVARNGLEGLQTMRTRRYSVVLCDAFMPVMSGMECIQRFRQWEGVHRAEQP--RQFIVGISSYLEGFD----RDSGAIDAFLSKPIDL 321
            AL+++D+  +RK+L ++LE      D A NG +GL  +  +RY + + D  MP+M G+ C ++FRQWE   RA     R  IVG S+  +  D     +SG +D F+ KP+++
Sbjct:  588 ALIVEDSSPIRKMLKRILERCEFAVDEAGNGEQGLALLCKKRYDIAIMDFLMPIMDGVTCTKKFRQWEAADRARAAAGRCLIVGSSANADAEDIKHAYESG-LDDFVPKPVNV 699          
BLAST of jgi.p|Trimin1|150174 vs. uniprot
Match: A0A836CIR1_9STRA (CheY-like superfamily protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIR1_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 4.470e-13
Identity = 46/116 (39.66%), Postives = 66/116 (56.90%), Query Frame = 1
Query:    4 LVIDDTGSVRKLLCKVLESKGLRCDVARNGLEGLQTMRTRRYSVVLCDAFMPVMSGMECIQRFRQWE---GVHRAEQPRQFI-VGISSYLEGFDR---DSGAIDAFLSKPIDLKWL 330
            LV+DD GS+RK L ++LE +G R  VA +G+EGL  M+T  +  VL D  MP M G+E +   R+WE         +  Q++ V  ++  E       +SGA D FL+KPID+  L
Sbjct:    2 LVVDDEGSIRKFLDRMLEQRGYRVVVACDGVEGLGAMKTCAFHAVLLDLNMPRMGGLEVLAALREWEREQXXXXXXRSAQYVCVTSANCAESVVTQVYESGA-DYFLAKPIDMATL 116          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|150174 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CJU7_9STRA5.920e-75100.00CheY-like superfamily protein (Fragment) n=1 Tax=T... [more]
A0A835Z8X6_9STRA2.000e-2045.13CheY-like superfamily protein (Fragment) n=1 Tax=T... [more]
B7FUD4_PHATC7.780e-2043.36Light histidine kinase n=1 Tax=Phaeodactylum trico... [more]
A0A6U2J5A7_9STRA9.890e-1941.12Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S0Z3C2_9CRYP2.780e-1743.86Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A7S1DHP0_HEMAN3.840e-1742.11Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
A0A2R5H3B4_9STRA1.160e-1542.31Hybrid signal transduction histidine kinase K n=1 ... [more]
A0A7S3YBA8_HETAK1.860e-1537.07Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
F0Y7I5_AURAN6.720e-1436.28Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A836CIR1_9STRA4.470e-1339.66CheY-like superfamily protein (Fragment) n=1 Tax=T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_20contigContig_20:732203..733870 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|150174|gw1.20.206.1
DescriptioncheY-homologous receiver domain
COG categoryT
Max annot lvl2836|Bacillariophyta
EggNOG OGsCOG0642@1|root,KOG0519@2759|Eukaryota,2XHDB@2836|Bacillariophyta
Evalue6.78e-23
Seed ortholog2850.Phatr5951
Hectar predicted targeting categoryother localisation
TranscriptId150496
TrackFilteredModels1
ProteinId150174
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|150174gene_4129Tribonema minus UTEX_B_3156 geneContig_20 732203..733870 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4129_1exon_4129_1Tribonema minus UTEX_B_3156 exonContig_20 732203..732327 +
exon_4129_2exon_4129_2Tribonema minus UTEX_B_3156 exonContig_20 733666..733870 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4129CDS_4129Tribonema minus UTEX_B_3156 CDSContig_20 732203..732327 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|150174Trimin1|150174|gw1.20.206.1Tribonema minus UTEX_B_3156 polypeptideContig_20 732203..733870 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4129 ID=mRNA_4129|Name=jgi.p|Trimin1|150174|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=330bp|location=Sequence derived from alignment at Contig_20:732203..733870+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCGCTGGTGATAGACGACACGGGCTCCGTGCGCAAGCTGCTGTGCAAGGT
GCTGGAGAGCAAGGGCCTGCGCTGCGACGTCGCGCGCAACGGCCTCGAGG
GGCTGCAGACGATGCGCACGCGCAGGTACAGCGTCGTGCTGTGCGACGCC
TTCATGCCCGTCATGTCGGGCATGGAGTGCATACAGCGCTTCCGCCAGTG
GGAGGGCGTCCACCGCGCGGAGCAGCCGCGCCAGTTCATCGTCGGCATCT
CGTCGTACCTCGAGGGCTTCGACCGCGACTCCGGCGCGATCGACGCCTTC
CTGTCCAAGCCCATCGATCTCAAGTGGCTG
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protein sequence of jgi.p|Trimin1|150174

>Trimin1|150174|gw1.20.206.1 ID=Trimin1|150174|gw1.20.206.1|Name=jgi.p|Trimin1|150174|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=110bp
ALVIDDTGSVRKLLCKVLESKGLRCDVARNGLEGLQTMRTRRYSVVLCDA
FMPVMSGMECIQRFRQWEGVHRAEQPRQFIVGISSYLEGFDRDSGAIDAF
LSKPIDLKWL
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mRNA from alignment at Contig_20:732203..733870+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4129 ID=mRNA_4129|Name=jgi.p|Trimin1|150174|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1668bp|location=Sequence derived from alignment at Contig_20:732203..733870+ (Tribonema minus UTEX_B_3156 )
GCGCTGGTGATAGACGACACGGGCTCCGTGCGCAAGCTGCTGTGCAAGGT GCTGGAGAGCAAGGGCCTGCGCTGCGACGTCGCGCGCAACGGCCTCGAGG GGCTGCAGACGATGCGCACGCGCAGGTACGTAGGTATATACTGCGTCCAC GCGCTTTAAGCTACCGCCAGCCCTCGCAGAATGTGGCATAAATAATCGCA CACGTGTCTGTGCGTGTGTGATTGCGGTCGACTTGGCGCATCGTTTCACG GCAAGCCTCCGTTGAGGGTTAGGACGAGGGCTGAGGGGAGGGGTGGCTCA TGCACACGCAACTTCAATTTGAAGAGTGGCACCAACACCCAAAGGCCTGG ATGGGTGTGTCGCTACCGCTGAGCGCTGCTGCTGGTTCGTAGTGAGCTCC CGCAGCGCTGCTCAGCAGCAAAAGCACATTTCGTAATACGTCAGCGCATG CACGTGGAGCGGCTCGCAGTTGGGTGCGATGGGCAAGTGTGTTCTGGCCG CAGGGCTCGGTTTGAGATGAGACGCGCAGGCGCAGGTGGGTAAGTATACG TGCGCGTGATGGCGACGGCTGCGCGCTGCTGCCGTTGAGCAACTGCAGCG CTCGCAGAGTGTGGCAAACATGATTGCACACGTGTCTGTGTGTGTGATCG CAGTCGGCTCGGCACGTCGCGGCTGCAGCGAAGCCCCACCTTAGGGTTAG GATGATTGCTGAGGGGGGGGGGTGCGGAGCGGGCTCGTGCACGTGCAACT TCAACTTCAAGTGTGGCACCAGTAGGCCAGACCGGCATTCACGACCAGCA CCGTCTACATGCTTGCGCTCGCACCCTCAACTTCAACAGCAGCATCCACA ATTTCAACACTGTCATCTGCGTTCAGCTCAGCTCAGCTGCGCTGAAACAC TCCCGCCATCCCGTCACGCCGCGTCGTGCTGTGCGACGCCTTCATGGCCA TTTTGCTTGATGCACCTTCAACTTCAACAGCAGCACCCACAACTCCAATG CTGCGCTAAAACAGCCCCCCCCCCTCCCCCCGCAGGTACAGCGTCGTGCT GTGCGACGCCGTCATGCCCGTCATGTCGGGCATGGAGTGCACACAGCTTC TTCAACTTGAACTGCAGCACACACAATTTCACCCCGAAAACCAGCGCGTC CAGCTGTGCTCACACACCGAGTGCATACAGCTTCAACTTGAATGGTAGCA CTCACAACTTCAACACTACCAGCAGCACATCCAGCAGCGCTCACACACTG CTACATACTCCTCGCACCCCACCGCAGGTACAGCGTGGTGATACTCCTCG CACCCCACCGCAGGTACAGCGTGGTGCTGTGCGACGCCTTCATGCCCATA TCACTCAATGCCTCCTCAACTTGAACAGCAGCACGCCACTAACTTCACCA TTACGACCAGCGCGTTCAGCGGCGCTCACGCGCAATCCCCCCCCCCCCCA CACACACACGCAGGTACAGCGTCGTGCTGTGCGACGCCTTCATGCCCGTC ATGTCGGGCATGGAGTGCATACAGCGCTTCCGCCAGTGGGAGGGCGTCCA CCGCGCGGAGCAGCCGCGCCAGTTCATCGTCGGCATCTCGTCGTACCTCG AGGGCTTCGACCGCGACTCCGGCGCGATCGACGCCTTCCTGTCCAAGCCC ATCGATCTCAAGTGGCTG
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Coding sequence (CDS) from alignment at Contig_20:732203..733870+

>mRNA_4129 ID=mRNA_4129|Name=jgi.p|Trimin1|150174|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=330bp|location=Sequence derived from alignment at Contig_20:732203..733870+ (Tribonema minus UTEX_B_3156 )
GCGCTGGTGATAGACGACACGGGCTCCGTGCGCAAGCTGCTGTGCAAGGT
GCTGGAGAGCAAGGGCCTGCGCTGCGACGTCGCGCGCAACGGCCTCGAGG
GGCTGCAGACGATGCGCACGCGCAGGTACAGCGTCGTGCTGTGCGACGCC
TTCATGCCCGTCATGTCGGGCATGGAGTGCATACAGCGCTTCCGCCAGTG
GGAGGGCGTCCACCGCGCGGAGCAGCCGCGCCAGTTCATCGTCGGCATCT
CGTCGTACCTCGAGGGCTTCGACCGCGACTCCGGCGCGATCGACGCCTTC
CTGTCCAAGCCCATCGATCTCAAGTGGCTG
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