mRNA_4129 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|150174 vs. uniprot
Match: A0A836CJU7_9STRA (CheY-like superfamily protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJU7_9STRA) HSP 1 Score: 226 bits (575), Expect = 5.920e-75 Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 Query: 1 ALVIDDTGSVRKLLCKVLESKGLRCDVARNGLEGLQTMRTRRYSVVLCDAFMPVMSGMECIQRFRQWEGVHRAEQPRQFIVGISSYLEGFDRDSGAIDAFLSKPIDLKWL 330 ALVIDDTGSVRKLLCKVLESKGLRCDVARNGLEGLQTMRTRRYSVVLCDAFMPVMSGMECIQRFRQWEGVHRAEQPRQFIVGISSYLEGFDRDSGAIDAFLSKPIDLKWL Sbjct: 1 ALVIDDTGSVRKLLCKVLESKGLRCDVARNGLEGLQTMRTRRYSVVLCDAFMPVMSGMECIQRFRQWEGVHRAEQPRQFIVGISSYLEGFDRDSGAIDAFLSKPIDLKWL 110
BLAST of jgi.p|Trimin1|150174 vs. uniprot
Match: A0A835Z8X6_9STRA (CheY-like superfamily protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8X6_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 2.000e-20 Identity = 51/113 (45.13%), Postives = 69/113 (61.06%), Query Frame = 1 Query: 4 LVIDDTGSVRKLLCKVLESKGLRCDVARNGLEGLQTMRTRRYSVVLCDAFMPVMSGMECIQRFRQWEGVHRAEQPRQFIVGISSYLEGFDRD----SGAIDAFLSKPIDLKWL 330 LVIDDT SVR L+ K L+ G + A NGL+GL+ ++ ++Y++V+ D MPV+ G+EC+QRFR WE RQ I+ S+ E D D SGA D FL KP+ L L Sbjct: 6 LVIDDTKSVRTLVGKALDWWGFDIEYATNGLQGLEALKKQQYALVITDLQMPVLDGLECVQRFRAWEW------QRQIILATSANCEAADMDLCIDSGA-DGFLPKPLSLSLL 111
BLAST of jgi.p|Trimin1|150174 vs. uniprot
Match: B7FUD4_PHATC (Light histidine kinase n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FUD4_PHATC) HSP 1 Score: 93.2 bits (230), Expect = 7.780e-20 Identity = 49/113 (43.36%), Postives = 71/113 (62.83%), Query Frame = 1 Query: 1 ALVIDDTGSVRKLLCKVLESKGLRCDVARNGLEGLQTMRTRRYSVVLCDAFMPVMSGMECIQRFRQWEGVHRAEQPRQFIVGISSYLEGFDRDSG---AIDAFLSKPIDLKWL 330 ALVIDD+ VRK L + L S G + A +G+EGL ++ R YSV LCD MP+M G++C+Q++R WE +R RQ IVGIS++ D + +D +++KPI +K L Sbjct: 533 ALVIDDSLVVRKTLVRGLSSLGYEVETASDGMEGLNALKKRIYSVCLCDFLMPIMDGLDCVQQYRVWEAEYRFSH-RQIIVGISAHATKKDSNIARQIGMDDYMAKPITIKML 644
BLAST of jgi.p|Trimin1|150174 vs. uniprot
Match: A0A6U2J5A7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A6U2J5A7_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 9.890e-19 Identity = 44/107 (41.12%), Postives = 70/107 (65.42%), Query Frame = 1 Query: 1 ALVIDDTGSVRKLLCKVLESKGLRCDVARNGLEGLQTMRTRRYSVVLCDAFMPVMSGMECIQRFRQWEGVHRAEQPRQFIVGISSYLEGFD----RDSGAIDAFLSK 309 ALVIDD+ R + + L + G R D A +G+EGL+++++ RY VV CD +PVM G++C++R+R+WE HR + Q I+G+S + D +D+G +D F+SK Sbjct: 77 ALVIDDSVVTRASVGRALRNMGFRVDAAVDGMEGLKSLQSARYDVVFCDFLLPVMDGIDCVKRYREWESTHRPKF-HQRIIGLSEHDSAADVKQGKDAG-MDDFVSK 181
BLAST of jgi.p|Trimin1|150174 vs. uniprot
Match: A0A7S0Z3C2_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0Z3C2_9CRYP) HSP 1 Score: 85.9 bits (211), Expect = 2.780e-17 Identity = 50/114 (43.86%), Postives = 67/114 (58.77%), Query Frame = 1 Query: 4 LVIDDTGSVRKLLCKVLESKGLRCDVARNGLEGLQTMRTRRYSVVLCDAFMPVMSGMECIQRFRQWE-GVHRAEQPRQFIVGISSYLEGFD----RDSGAIDAFLSKPIDLKWL 330 L+I+D R+L+ K LE + A NG EGL+ ++ RYS+VLCD MPVM G+ECI+RFRQWE G E QF+ +S+ E D R+ G D F KP+ +K L Sbjct: 482 LLIEDDVPTRRLMTKALEKQKFSVVQAGNGEEGLEKLKESRYSMVLCDIMMPVMDGVECIRRFRQWEQGQASREGGEQFVCALSANTEASDVEKTRNVGMND-FFPKPVKIKEL 594
BLAST of jgi.p|Trimin1|150174 vs. uniprot
Match: A0A7S1DHP0_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DHP0_HEMAN) HSP 1 Score: 85.5 bits (210), Expect = 3.840e-17 Identity = 48/114 (42.11%), Postives = 70/114 (61.40%), Query Frame = 1 Query: 4 LVIDDTGSVRKLLCKVLESKGLRCDVARNGLEGLQTMRTRRYSVVLCDAFMPVMSGMECIQRFRQWEGVHRAEQP-RQFIVGISSYLEGFD----RDSGAIDAFLSKPIDLKWL 330 L+I+D S RKL+ K LE +G A NG+EGL+ ++ +R+++VLCD MPVM G+EC +RFRQWE + Q+I +S+ E D RD G +D F KP+ ++ L Sbjct: 563 LLIEDDVSTRKLMTKGLEKQGYTVVQAGNGVEGLEKLQEQRFNMVLCDIMMPVMDGVECTRRFRQWEKQQSSRSGGAQYICALSANTEASDVAKTRDVG-MDDFFPKPVKIQEL 675
BLAST of jgi.p|Trimin1|150174 vs. uniprot
Match: A0A2R5H3B4_9STRA (Hybrid signal transduction histidine kinase K n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5H3B4_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 1.160e-15 Identity = 44/104 (42.31%), Postives = 66/104 (63.46%), Query Frame = 1 Query: 4 LVIDDTGSVRKLLCKVLESKGLRCDVARNGLEGLQTMRTRRYSVVLCDAFMPVMSGMECIQRFRQWEGVHRAEQPRQFIVGISSYLEGFDRDSGAIDAFLSKPI 315 L+I+D +KLL K L++ VA +G+EGL+ ++ R YS+VLCD MP M+G CI++FR+WE +R E RQF+ G+S+ EG + D ++ KPI Sbjct: 492 LIIEDEIVQQKLLTKQLQNLSYEVFVANDGVEGLEALKERPYSLVLCDKLMPRMNGDVCIRQFRRWESSNR-EDNRQFVCGLSATKEGALPEG--FDLYMPKPI 592
BLAST of jgi.p|Trimin1|150174 vs. uniprot
Match: A0A7S3YBA8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YBA8_HETAK) HSP 1 Score: 80.5 bits (197), Expect = 1.860e-15 Identity = 43/116 (37.07%), Postives = 65/116 (56.03%), Query Frame = 1 Query: 1 ALVIDDTGSVRKLLCKVLESKGLRCDVARNGLEGLQTMRTRRYSVVLCDAFMPVMSGMECIQRFRQW---EGVHRAEQPRQFIVGISSYLEGFDRDSG---AIDAFLSKPIDLKWL 330 ALV+DD ++RK+L VL+ + D A +G +G + ++ Y +V CD MP++SG +CIQ+FR W EGV A P F VGIS+ D G + + +KP+ + L Sbjct: 169 ALVVDDNRTIRKMLKMVLDKQDCEVDTANDGRQGFEALKAAPYDLVFCDFLMPILSGPDCIQKFRSWRWAEGVETAPNP--FTVGISANASVADSAKGLEAGMHLYTAKPVKAQLL 282
BLAST of jgi.p|Trimin1|150174 vs. uniprot
Match: F0Y7I5_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y7I5_AURAN) HSP 1 Score: 76.3 bits (186), Expect = 6.720e-14 Identity = 41/113 (36.28%), Postives = 66/113 (58.41%), Query Frame = 1 Query: 1 ALVIDDTGSVRKLLCKVLESKGLRCDVARNGLEGLQTMRTRRYSVVLCDAFMPVMSGMECIQRFRQWEGVHRAEQP--RQFIVGISSYLEGFD----RDSGAIDAFLSKPIDL 321 AL+++D+ +RK+L ++LE D A NG +GL + +RY + + D MP+M G+ C ++FRQWE RA R IVG S+ + D +SG +D F+ KP+++ Sbjct: 588 ALIVEDSSPIRKMLKRILERCEFAVDEAGNGEQGLALLCKKRYDIAIMDFLMPIMDGVTCTKKFRQWEAADRARAAAGRCLIVGSSANADAEDIKHAYESG-LDDFVPKPVNV 699
BLAST of jgi.p|Trimin1|150174 vs. uniprot
Match: A0A836CIR1_9STRA (CheY-like superfamily protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIR1_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 4.470e-13 Identity = 46/116 (39.66%), Postives = 66/116 (56.90%), Query Frame = 1 Query: 4 LVIDDTGSVRKLLCKVLESKGLRCDVARNGLEGLQTMRTRRYSVVLCDAFMPVMSGMECIQRFRQWE---GVHRAEQPRQFI-VGISSYLEGFDR---DSGAIDAFLSKPIDLKWL 330 LV+DD GS+RK L ++LE +G R VA +G+EGL M+T + VL D MP M G+E + R+WE + Q++ V ++ E +SGA D FL+KPID+ L Sbjct: 2 LVVDDEGSIRKFLDRMLEQRGYRVVVACDGVEGLGAMKTCAFHAVLLDLNMPRMGGLEVLAALREWEREQXXXXXXRSAQYVCVTSANCAESVVTQVYESGA-DYFLAKPIDMATL 116 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|150174 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_4129 ID=mRNA_4129|Name=jgi.p|Trimin1|150174|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=330bp|location=Sequence derived from alignment at Contig_20:732203..733870+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GCGCTGGTGATAGACGACACGGGCTCCGTGCGCAAGCTGCTGTGCAAGGTback to top protein sequence of jgi.p|Trimin1|150174 >Trimin1|150174|gw1.20.206.1 ID=Trimin1|150174|gw1.20.206.1|Name=jgi.p|Trimin1|150174|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=110bp ALVIDDTGSVRKLLCKVLESKGLRCDVARNGLEGLQTMRTRRYSVVLCDAback to top mRNA from alignment at Contig_20:732203..733870+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_4129 ID=mRNA_4129|Name=jgi.p|Trimin1|150174|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1668bp|location=Sequence derived from alignment at Contig_20:732203..733870+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_20:732203..733870+ >mRNA_4129 ID=mRNA_4129|Name=jgi.p|Trimin1|150174|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=330bp|location=Sequence derived from alignment at Contig_20:732203..733870+ (Tribonema minus UTEX_B_3156 )back to top |