mRNA_4127 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348153
Unique NamemRNA_4127
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|348153 vs. uniprot
Match: A0A836CHV2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHV2_9STRA)

HSP 1 Score: 300 bits (768), Expect = 6.390e-101
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 2 
Query:   17 MLCRTVGYHPVDKTLLWCNERGGMDLESVIRCASQVRNQALARDRRGAVRHFFRMAQRRDGAAAALDADALGRFLRALGADALPRPALERACEALSGRRERDVYEDDLVAYARRAWARGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMPGLQRCSDSAGGDYGEAGLAVAPAAERAAVARGSSISFQIT 658
            MLCRTVGYHPVDKTLLWCNERGGMDLESVIRCASQVRNQALARDRRGAVRHFFRMAQRRDGAAAALDADALGRFLRALGADALPRPALERACEALSGRRERDVYEDDLVAYARRAWARGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMPGLQRCSDSAGGDYGEAGLAVAPAAERAAVARGSSISFQIT
Sbjct:    1 MLCRTVGYHPVDKTLLWCNERGGMDLESVIRCASQVRNQALARDRRGAVRHFFRMAQRRDGAAAALDADALGRFLRALGADALPRPALERACEALSGRRERDVYEDDLVAYARRAWARGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMPGLQRCSDSAGGDYGEAGLAVAPAAERAAVARGSSISFQIT 214
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348153 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CHV2_9STRA6.390e-101100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_20contigContig_20:708636..710258 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348153|estExt_Genemark1.C_Ctg_200089
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-13_003940.1
TranscriptId348475
TrackFilteredModels1
ProteinId348153
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348153gene_4127Tribonema minus UTEX_B_3156 geneContig_20 708636..710258 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348153Trimin1|348153|estExt_Genemark1.C_Ctg_200089Tribonema minus UTEX_B_3156 polypeptideContig_20 708636..710242 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4127_2exon_4127_2Tribonema minus UTEX_B_3156 exonContig_20 708636..709172 -
exon_4127_1exon_4127_1Tribonema minus UTEX_B_3156 exonContig_20 710135..710258 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4127CDS_4127Tribonema minus UTEX_B_3156 CDSContig_20 710135..710242 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_4127UTR5_4127Tribonema minus UTEX_B_3156 five_prime_UTRContig_20 710243..710258 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4127 ID=mRNA_4127|Name=jgi.p|Trimin1|348153|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=661bp|location=Sequence derived from alignment at Contig_20:708636..710258- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCGGGACCAGGCTGCCATGCTGTGCAGGACAGTTGGCTACCACCCAGTTG
ACAAAACCCTGCTGTGGTGCAATGAGAGGGGAGGAATGGACTTGGAGTCG
GTTATTCGGTGCGCTAGCCAAGTGCGCAACCAGGCGCTCGCGCGCGACCG
CCGCGGCGCCGTGCGCCACTTCTTCCGCATGGCGCAGCGCCGCGACGGCG
CGGCGGCGGCACTCGACGCGGACGCCCTCGGCCGCTTCCTGCGCGCGCTG
GGCGCCGACGCGCTGCCGCGCCCCGCGCTCGAGCGCGCGTGCGAGGCGCT
GAGCGGCCGCCGCGAGCGCGACGTCTACGAGGACGACCTCGTGGCGTACG
CGCGCCGCGCGTGGGCGCGCGGCGGCGCGCGCGGCGGCAGCGGCGGCAGG
CGCGGCGGCGGCGGCGGCAGCGGCGCACATGGCGCTGCGGCGGACGCTCA
GTCAGGGGCGGCGGTGGCAGCGGCAGCGGCGGCGGCGGCGGCGGCGGCGG
CGGGGGAAGCAGCAGCGGGGGCGGCTGCAGGGATGCCAGGATTGCAGCGG
TGTAGTGACAGCGCGGGTGGTGATTATGGGGAGGCGGGACTGGCTGTGGC
GCCGGCGGCAGAGCGGGCGGCCGTGGCACGCGGCTCCTCAATCAGCTTTC
AAATCACATAG
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protein sequence of jgi.p|Trimin1|348153

>Trimin1|348153|estExt_Genemark1.C_Ctg_200089 ID=Trimin1|348153|estExt_Genemark1.C_Ctg_200089|Name=jgi.p|Trimin1|348153|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=215bp
MLCRTVGYHPVDKTLLWCNERGGMDLESVIRCASQVRNQALARDRRGAVR
HFFRMAQRRDGAAAALDADALGRFLRALGADALPRPALERACEALSGRRE
RDVYEDDLVAYARRAWARGGARGGSGGRRGGGGGSGAHGAAADAQSGAAV
AAAAAAAAAAAAGEAAAGAAAGMPGLQRCSDSAGGDYGEAGLAVAPAAER
AAVARGSSISFQIT*
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mRNA from alignment at Contig_20:708636..710258-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4127 ID=mRNA_4127|Name=jgi.p|Trimin1|348153|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1623bp|location=Sequence derived from alignment at Contig_20:708636..710258- (Tribonema minus UTEX_B_3156 )
CCGGGACCAGGCTGCCATGCTGTGCAGGACAGTTGGCTACCACCCAGTTG
ACAAAACCCTGCTGTGGTGCAATGAGAGGGGAGGAATGGACTTGGAGTCG
GTTATTCGGTGCGCTAGCCAAGTGGTGAGTGCAAACCCACAACTCGAAGT
TGATTCCGCGTTCGCTGCGCGCCTCAGATCAAGGCCTTGTAAGTCTCTTT
GTCAATGTTGAGGTGTGAGATGGGACTCTCTATTGTTTTCATTGATTATA
CCAGGCGACTACGGCGACACAACCACCACTGAATAGCTCTCCTTGTGCAG
ACGTCGGGGCTTCGCCGTTGCAAGGGCAGTCAGCCCAACATGGTCGTCAA
ACATTGCCACCGTCGCACTACGCTGGTGATCACCTGATTGAACCAGTGAC
TGCAAAAATTGCTGAGCATTGAGACCAGCGCACGCGTGCCCAACGCTGCT
TCATGATACCAGAAGTGCAGCAGCAGCTGACGCGGCAGCAACCGCAGGAT
AAGGGTGTTGTGTCTTCGTGCTCAATAAGCATGCAGCTCGCTGCGCGCCA
CTGCCGCTGACACCGTGTGCACAATGGCCGTTGCCGCGCCGCACCAGCAA
GCGGGCATGCTTTCAACAGCACGGCGCTGTGCGTCACGTGCGTGTGCCTT
AAAGCACACAGTACGCCCGCCGCCATGGCCCGACCTCTGCTTACAAACAG
CACAGCATGGATCTCAGCGCTGCCGCTGATGCATGGCATGGCACCCCACG
CCGCCTATGGCAGTGCACTGCCAGGCACAACCGCCGGAGCATCGAGCTGC
GACGCCATTGCCGCACGACACAGCGCTGTCAAGGCGATGTTCCCGCGCAT
GTTGCGGGCGAATCGTACCGCAGTGCGGCTGGCCTGACGCACCTGCAGAT
CAGAGGCTGCCTTTGGTGCCTTCAGCCACACGCGCGAACACTCACACACA
AACACACACGCACTACTCACACACACTCACACACACTCACACACACACGC
GCGCGCGCGCGCGCATACACACACGCGCATACACACACCACCACACACAC
ACAAGTGCCCCCCCTCGCCCGCCCCCCCGCGCGCAGCGCAACCAGGCGCT
CGCGCGCGACCGCCGCGGCGCCGTGCGCCACTTCTTCCGCATGGCGCAGC
GCCGCGACGGCGCGGCGGCGGCACTCGACGCGGACGCCCTCGGCCGCTTC
CTGCGCGCGCTGGGCGCCGACGCGCTGCCGCGCCCCGCGCTCGAGCGCGC
GTGCGAGGCGCTGAGCGGCCGCCGCGAGCGCGACGTCTACGAGGACGACC
TCGTGGCGTACGCGCGCCGCGCGTGGGCGCGCGGCGGCGCGCGCGGCGGC
AGCGGCGGCAGGCGCGGCGGCGGCGGCGGCAGCGGCGCACATGGCGCTGC
GGCGGACGCTCAGTCAGGGGCGGCGGTGGCAGCGGCAGCGGCGGCGGCGG
CGGCGGCGGCGGCGGGGGAAGCAGCAGCGGGGGCGGCTGCAGGGATGCCA
GGATTGCAGCGGTGTAGTGACAGCGCGGGTGGTGATTATGGGGAGGCGGG
ACTGGCTGTGGCGCCGGCGGCAGAGCGGGCGGCCGTGGCACGCGGCTCCT
CAATCAGCTTTCAAATCACATAG
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Coding sequence (CDS) from alignment at Contig_20:708636..710258-

>mRNA_4127 ID=mRNA_4127|Name=jgi.p|Trimin1|348153|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=645bp|location=Sequence derived from alignment at Contig_20:708636..710258- (Tribonema minus UTEX_B_3156 )
ATGCTGTGCAGGACAGTTGGCTACCACCCAGTTGACAAAACCCTGCTGTG
GTGCAATGAGAGGGGAGGAATGGACTTGGAGTCGGTTATTCGGTGCGCTA
GCCAAGTGCGCAACCAGGCGCTCGCGCGCGACCGCCGCGGCGCCGTGCGC
CACTTCTTCCGCATGGCGCAGCGCCGCGACGGCGCGGCGGCGGCACTCGA
CGCGGACGCCCTCGGCCGCTTCCTGCGCGCGCTGGGCGCCGACGCGCTGC
CGCGCCCCGCGCTCGAGCGCGCGTGCGAGGCGCTGAGCGGCCGCCGCGAG
CGCGACGTCTACGAGGACGACCTCGTGGCGTACGCGCGCCGCGCGTGGGC
GCGCGGCGGCGCGCGCGGCGGCAGCGGCGGCAGGCGCGGCGGCGGCGGCG
GCAGCGGCGCACATGGCGCTGCGGCGGACGCTCAGTCAGGGGCGGCGGTG
GCAGCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGGGGAAGCAGCAGC
GGGGGCGGCTGCAGGGATGCCAGGATTGCAGCGGTGTAGTGACAGCGCGG
GTGGTGATTATGGGGAGGCGGGACTGGCTGTGGCGCCGGCGGCAGAGCGG
GCGGCCGTGGCACGCGGCTCCTCAATCAGCTTTCAAATCACATAG
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