mRNA_4120 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|162400
Unique NamemRNA_4120
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|162400 vs. uniprot
Match: A0A835Z241_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z241_9STRA)

HSP 1 Score: 273 bits (697), Expect = 5.320e-93
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 1 
Query:    1 RTVSPVELAELCFAKYDKYHDLSIYSAQPFGRENRQVALNIYGPALGDRNFPYTEDQYLQKLGTVCQMLNQFDQAWYVRQFMAEPVKPRRGLPSRPRFDTAVTLRLNTSPTWRFVPPNQLDEWFQYM 381
            RTVSPVELAELCFAKYDKYHDLSIYSAQPFGRENRQVALNIYGPALGDRNFPYTEDQYLQKLGTVCQMLNQFDQAWYVRQFMAEPVKPRRGLPSRPRFDTAVTLRLNTSPTWRFVPPNQLDEWFQYM
Sbjct:    1 RTVSPVELAELCFAKYDKYHDLSIYSAQPFGRENRQVALNIYGPALGDRNFPYTEDQYLQKLGTVCQMLNQFDQAWYVRQFMAEPVKPRRGLPSRPRFDTAVTLRLNTSPTWRFVPPNQLDEWFQYM 127
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BLAST of jgi.p|Trimin1|162400 vs. uniprot
Match: A0A5J4Z4B0_PORPP (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z4B0_PORPP)

HSP 1 Score: 169 bits (429), Expect = 7.610e-50
Identity = 76/126 (60.32%), Postives = 96/126 (76.19%), Query Frame = 1 
Query:    1 RTVSPVELAELCFAKYDKYHDLSIYSAQPFGRENRQVALNIYGPALGDRNFPYTEDQYLQKLGTVCQMLNQFDQAWYVRQFMAEPVKPRRGLPSRPRFDTAVTLRLNTSPTWRFVPPNQLDEWFQY 378
            R +S  ELAELC+ KY  YHD+S+  AQPFG  +RQVA+NIYGP LG ++FP TE QYL+KL  +C  L  FDQAWYVR F  EP+ PRRGLPS PR DT++T+RLN SPTW++VP + +D++F Y
Sbjct:  180 RQLSGAELAELCWRKYGYYHDVSMLQAQPFGESDRQVAVNIYGPFLGMKDFPMTERQYLEKLDALCARLMAFDQAWYVRSFFLEPIYPRRGLPSTPRADTSITIRLNESPTWKYVPKDLVDQFFVY 305
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BLAST of jgi.p|Trimin1|162400 vs. uniprot
Match: A0A6T9YL17_BIGNA (Hypothetical protein n=2 Tax=Bigelowiella natans TaxID=227086 RepID=A0A6T9YL17_BIGNA)

HSP 1 Score: 166 bits (419), Expect = 4.160e-48
Identity = 76/126 (60.32%), Postives = 96/126 (76.19%), Query Frame = 1 
Query:    1 RTVSPVELAELCFAKYDKYHDLSIYSAQPFGRENRQVALNIYGPALGDRNFPYTEDQYLQKLGTVCQMLNQFDQAWYVRQFMAEPVKPRRGLPSRPRFDTAVTLRLNTSPTWRFVPPNQLDEWFQY 378
            R +S  +LAE+ FAKY KYHD+++  A+PFG + RQVA+NIYGP LG+ +FPY+E QYL KL  +  MLN +DQAWYV++F+   +KPRRGLPSRPR DTAVTLRLN SPTW  VP  Q+ E F +
Sbjct:  201 RYISGRKLAEMVFAKYGKYHDVTLLQAKPFGADFRQVAVNIYGPHLGNPSFPYSEQQYLDKLDGIAHMLNTWDQAWYVQEFLESEIKPRRGLPSRPRSDTAVTLRLNQSPTWPLVPDEQVSEVFSW 326
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BLAST of jgi.p|Trimin1|162400 vs. uniprot
Match: A0A6T6Z8V4_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A6T6Z8V4_9EUKA)

HSP 1 Score: 162 bits (409), Expect = 9.020e-47
Identity = 75/122 (61.48%), Postives = 93/122 (76.23%), Query Frame = 1 
Query:   19 ELAELCFAKYDKYHDLSIYSAQPFGR--ENRQVALNIYGPALGDRNFPYTEDQYLQKLGTVCQMLNQFDQAWYVRQFMAEPVKPRRGLPSRPRFDTAVTLRLNTSPTWRFVPPNQLDEWFQY 378
            +LAE+ +AKY +YHD+S+  A+PFG   E RQVALNIYGP LG+ +FPY+EDQYL KL  +  MLN +DQAWYV++F+   + PRRGLPSRPR DTAVTLRLN SPTW  VP  Q+ E F +
Sbjct:  190 KLAEMVYAKYGRYHDVSLLQAKPFGNREEGRQVALNIYGPHLGNPSFPYSEDQYLSKLDGISHMLNTWDQAWYVQEFLVSKLAPRRGLPSRPRADTAVTLRLNQSPTWEMVPAEQISEVFSW 311
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BLAST of jgi.p|Trimin1|162400 vs. uniprot
Match: A0A7S3XUQ2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUQ2_HETAK)

HSP 1 Score: 161 bits (408), Expect = 1.410e-46
Identity = 75/123 (60.98%), Postives = 93/123 (75.61%), Query Frame = 1 
Query:    1 RTVSPVELAELCFAKYDKYHDLSIYSAQPFGRENRQVALNIYGPALGDRNFPYTEDQYLQKLGTVCQMLNQFDQAWYVRQFMAEPVKPRRGLPSRPRFDTAVTLRLNTSPTWRFVPPNQLDEW 369
            R  S  ELAELCFAKY +YHDLS+Y + PFG++ RQVA N+YG  LG RNFP TE QYL KL  V +MLN +DQAWYV+ F+ EP   RRGLPS P++DTAVTLRLN SPTW+++   ++ E+
Sbjct:  188 RFASGRELAELCFAKYGQYHDLSVYYSDPFGKDQRQVAFNVYGSMLGARNFPMTEFQYLAKLDYVVEMLNAWDQAWYVKAFLLEPPIARRGLPSHPKWDTAVTLRLNKSPTWKYLDLERIKEF 310
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BLAST of jgi.p|Trimin1|162400 vs. uniprot
Match: A0A8J6CI26_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CI26_DIALT)

HSP 1 Score: 161 bits (407), Expect = 1.590e-46
Identity = 75/127 (59.06%), Postives = 96/127 (75.59%), Query Frame = 1 
Query:    1 RTVSPVELAELCFAKYDKYHDLSIYSAQPFGRENRQVALNIYGPALGDRNFPYTEDQYLQKLGTVCQMLNQFDQAWYVRQFMAEPVKPRRGLPSRPRFDTAVTLRLNTSPTWRFVPPNQLDEWFQYM 381
            R ++  ELAELCFAKY +YHD++I +A PFG+ NRQVA+NIYGP+LG   F  TE QYL K  ++   LN + QA +VR+F  E VKPRRGLPSRPR DTAVTLRLNTSPTW  VP  ++D +++++
Sbjct:  180 RPITGRELAELCFAKYSRYHDIAILTATPFGKANRQVAVNIYGPSLGFGGFKLTEQQYLDKCCSIADALNDWGQAEFVREFFLEAVKPRRGLPSRPRADTAVTLRLNTSPTWAQVPQEKIDTYWKFL 306
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BLAST of jgi.p|Trimin1|162400 vs. uniprot
Match: A0A6U3D251_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A6U3D251_9EUKA)

HSP 1 Score: 160 bits (405), Expect = 3.250e-46
Identity = 73/120 (60.83%), Postives = 90/120 (75.00%), Query Frame = 1 
Query:   19 ELAELCFAKYDKYHDLSIYSAQPFGRENRQVALNIYGPALGDRNFPYTEDQYLQKLGTVCQMLNQFDQAWYVRQFMAEPVKPRRGLPSRPRFDTAVTLRLNTSPTWRFVPPNQLDEWFQY 378
            +LAE+ +AKY KYHD+S+  A+PFG + RQVA NIYGP LG  +FPY+EDQYL KL  +   LN +DQAWYV++F+   +KPRRGLPSRPR DTAVTLRLN SPTW  VP   + E F +
Sbjct:  188 KLAEMVYAKYGKYHDVSLLQAKPFGSDYRQVAFNIYGPHLGSPSFPYSEDQYLAKLDELSHKLNTWDQAWYVQEFLESAIKPRRGLPSRPRADTAVTLRLNQSPTWYLVPDENVSEVFSW 307
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BLAST of jgi.p|Trimin1|162400 vs. uniprot
Match: A0A7S3EJF1_9RHOD (Hypothetical protein (Fragment) n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EJF1_9RHOD)

HSP 1 Score: 159 bits (403), Expect = 5.020e-46
Identity = 72/104 (69.23%), Postives = 87/104 (83.65%), Query Frame = 1 
Query:   22 LAELCFAKYDKYHDLSIYSAQPFGRENRQVALNIYGPALGDRNFPYTEDQYLQKLGTVCQMLNQFDQAWYVRQFMAEPVKPRRGLPSRPRFDTAVTLRLNTSPT 333
            LAELCF+KY KYHD+ I  +QPFG E+RQVA NIY PALG+  FPY+E++YL+KL  V  +LN  DQAW+VR+F+ EP+KPRRGLPS PR+DTAVTLRLNTSPT
Sbjct:  194 LAELCFSKYGKYHDMDILQSQPFGSEHRQVAFNIYHPALGESIFPYSEEEYLKKLNIVSSLLNSVDQAWFVRKFLQEPIKPRRGLPSTPRWDTAVTLRLNTSPT 297
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BLAST of jgi.p|Trimin1|162400 vs. uniprot
Match: A0A7S0G281_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G281_9RHOD)

HSP 1 Score: 159 bits (403), Expect = 6.490e-46
Identity = 80/160 (50.00%), Postives = 98/160 (61.25%), Query Frame = 1 
Query:    1 RTVSPVELAELCFAKYDKYHDLSIYSAQPFGRENRQVALNIYGPALGDRNFPYTEDQYLQKLGTVCQMLNQFDQAWYVRQFMAEPVKPRRG----------------------------------LPSRPRFDTAVTLRLNTSPTWRFVPPNQLDEWFQY 378
            R V    LAELCF KY KYHD++I  +QPFG E+RQVA NIY PALG+  FPY+E++YL KL  V  +LN  DQAW+VR+F+ EP+KPRRG                                  LPS PR+DTAVTLRLNTSPTW +VP   +D++F Y
Sbjct:  148 RLVDGRTLAELCFCKYGKYHDMNILQSQPFGSEHRQVAFNIYHPALGETIFPYSEEEYLSKLNKVSSLLNSVDQAWFVRKFLQEPIKPRRGEFFRHLVQCVFQIVMNKLINRPRNARDFLNWTTGLPSTPRWDTAVTLRLNTSPTWSYVPVEVVDQFFYY 307
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BLAST of jgi.p|Trimin1|162400 vs. uniprot
Match: A0A7R9U9B0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U9B0_9STRA)

HSP 1 Score: 159 bits (402), Expect = 1.550e-45
Identity = 78/119 (65.55%), Postives = 89/119 (74.79%), Query Frame = 1 
Query:   19 ELAELCFAKYDKYHDLSIYSAQPFGRENRQVALNIYGPALGDRN-FPYTEDQYLQKLGTVCQMLNQFDQAWYVRQFMAEPVKPRRGLPSRPRFDTAVTLRLNTSPTWRFVPPNQLDEWF 372
            +LAEL FAKY +YHD ++       R   QVA NIYGPALGDR  F YTE QYL+KL TV  MLN FDQAWYVR F+ EP+ PRRGLPS PR DTAVTLRLNTSPTWR+V P +++ WF
Sbjct:  211 QLAELVFAKYGRYHDCAML------RTTGQVAFNIYGPALGDRRGFGYTESQYLEKLDTVAAMLNDFDQAWYVRGFLLEPIYPRRGLPSTPRADTAVTLRLNTSPTWRYVDPEKVEGWF 323
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|162400 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z241_9STRA5.320e-93100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A5J4Z4B0_PORPP7.610e-5060.32Uncharacterized protein n=1 Tax=Porphyridium purpu... [more]
A0A6T9YL17_BIGNA4.160e-4860.32Hypothetical protein n=2 Tax=Bigelowiella natans T... [more]
A0A6T6Z8V4_9EUKA9.020e-4761.48Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A7S3XUQ2_HETAK1.410e-4660.98Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8J6CI26_DIALT1.590e-4659.06Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A6U3D251_9EUKA3.250e-4660.83Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A7S3EJF1_9RHOD5.020e-4669.23Hypothetical protein (Fragment) n=2 Tax=Rhodosorus... [more]
A0A7S0G281_9RHOD6.490e-4650.00Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A7R9U9B0_9STRA1.550e-4565.55Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_20contigContig_20:659548..660477 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|162400|e_gw1.20.125.1
DescriptionDomain of unknown function (DUF3067)
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs2AH3C@1|root,2S85F@2759|Eukaryota
Evalue2.54e-51
Seed ortholog227086.JGI_V11_62962
Hectar predicted targeting categoryother localisation
TranscriptId162722
TrackFilteredModels1
ProteinId162400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|162400gene_4120Tribonema minus UTEX_B_3156 geneContig_20 659548..660477 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4120_1exon_4120_1Tribonema minus UTEX_B_3156 exonContig_20 659548..659760 +
exon_4120_2exon_4120_2Tribonema minus UTEX_B_3156 exonContig_20 660307..660477 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4120CDS_4120Tribonema minus UTEX_B_3156 CDSContig_20 659548..659760 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|162400Trimin1|162400|e_gw1.20.125.1Tribonema minus UTEX_B_3156 polypeptideContig_20 659548..660477 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4120 ID=mRNA_4120|Name=jgi.p|Trimin1|162400|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=384bp|location=Sequence derived from alignment at Contig_20:659548..660477+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGCACTGTGTCGCCCGTCGAGCTCGCTGAGCTGTGCTTTGCCAAGTACGA
CAAGTACCACGACCTCTCCATCTACTCCGCGCAGCCCTTTGGGCGCGAGA
ACCGTCAGGTCGCGCTCAACATCTACGGACCGGCGCTGGGGGACCGGAAC
TTTCCTTACACGGAGGACCAGTACCTGCAGAAGCTGGGCACCGTGTGTCA
GATGCTCAACCAGTTTGACCAGGCGTGGTACGTGCGGCAGTTCATGGCGG
AGCCCGTGAAGCCGCGGCGCGGCCTGCCGTCGCGGCCGCGCTTCGACACG
GCGGTTACGCTGCGCCTCAACACTTCGCCCACGTGGCGCTTCGTGCCGCC
CAACCAGCTCGACGAGTGGTTCCAGTACATGTAA
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protein sequence of jgi.p|Trimin1|162400

>Trimin1|162400|e_gw1.20.125.1 ID=Trimin1|162400|e_gw1.20.125.1|Name=jgi.p|Trimin1|162400|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=128bp
RTVSPVELAELCFAKYDKYHDLSIYSAQPFGRENRQVALNIYGPALGDRN
FPYTEDQYLQKLGTVCQMLNQFDQAWYVRQFMAEPVKPRRGLPSRPRFDT
AVTLRLNTSPTWRFVPPNQLDEWFQYM*
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mRNA from alignment at Contig_20:659548..660477+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4120 ID=mRNA_4120|Name=jgi.p|Trimin1|162400|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=930bp|location=Sequence derived from alignment at Contig_20:659548..660477+ (Tribonema minus UTEX_B_3156 )
CGCACTGTGTCGCCCGTCGAGCTCGCTGAGCTGTGCTTTGCCAAGTACGA
CAAGTACCACGACCTCTCCATCTACTCCGCGCAGCCCTTTGGGCGCGAGA
ACCGTCAGGTCGCGCTCAACATCTACGGACCGGCGCTGGGGGACCGGAAC
TTTCCTTACACGGAGGACCAGTACCTGCAGAAGCTGGGCACCGTGTGTCA
GATGCTCAACCAGGTGAGAGGGGGGGGGGGGAGGCGGCAGTCGCCCACGT
GCGTTGCGGCTTGGCTGCGGATGAAGTGCCGTGCGTGCGATAGTTGGCTT
GCCCCGGCATATACTGCTGGTTCTAAGTTCCAGCGAAATGCCAGATCCGG
AACACGCACGCTGTCACAGATGCTGCTTTCAGCAGCATCTCACAGATGCT
GCCAAAAGCCGCATCTGTGAGCGCCAGGGCCAGTGCTTTCATAAGTTACA
GCCAACGACAAGCATCGGCGCTTGCCACATATACCTACCTACCGTTGGCT
GTCGGCGCTCACCGCCGCGGTCTTCACCGCGCCCTGCCCCCCGCCCTGCA
GTGCACGCCATGTCGGGTGTGCCCTCTGAAGAACTCGCAAACGGCATCAA
GTCCCCTTGGCAGTAAAACAGCAAAAACAAAAAGAACACGTCCCATCCCC
ACTACTGCAAGCTGCCAGCAGCACACACATCTCACCTTCACAGCTGCAAG
CTGATGGTTCGCAGTGCTCACCACCGCGCCCCCCCCCTCCCCCTCCCCCC
CTCGTGCAGTTTGACCAGGCGTGGTACGTGCGGCAGTTCATGGCGGAGCC
CGTGAAGCCGCGGCGCGGCCTGCCGTCGCGGCCGCGCTTCGACACGGCGG
TTACGCTGCGCCTCAACACTTCGCCCACGTGGCGCTTCGTGCCGCCCAAC
CAGCTCGACGAGTGGTTCCAGTACATGTAA
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Coding sequence (CDS) from alignment at Contig_20:659548..660477+

>mRNA_4120 ID=mRNA_4120|Name=jgi.p|Trimin1|162400|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=384bp|location=Sequence derived from alignment at Contig_20:659548..660477+ (Tribonema minus UTEX_B_3156 )
CGCACTGTGTCGCCCGTCGAGCTCGCTGAGCTGTGCTTTGCCAAGTACGA
CAAGTACCACGACCTCTCCATCTACTCCGCGCAGCCCTTTGGGCGCGAGA
ACCGTCAGGTCGCGCTCAACATCTACGGACCGGCGCTGGGGGACCGGAAC
TTTCCTTACACGGAGGACCAGTACCTGCAGAAGCTGGGCACCGTGTGTCA
GATGCTCAACCAGTTTGACCAGGCGTGGTACGTGCGGCAGTTCATGGCGG
AGCCCGTGAAGCCGCGGCGCGGCCTGCCGTCGCGGCCGCGCTTCGACACG
GCGGTTACGCTGCGCCTCAACACTTCGCCCACGTGGCGCTTCGTGCCGCC
CAACCAGCTCGACGAGTGGTTCCAGTACATGTAA
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