mRNA_4098 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348140
Unique NamemRNA_4098
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|348140 vs. uniprot
Match: A0A835Z450_9STRA (UmuC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z450_9STRA)

HSP 1 Score: 1370 bits (3545), Expect = 0.000e+0
Identity = 942/942 (100.00%), Postives = 942/942 (100.00%), Query Frame = 1
Query:    1 MEKLNPYKQRQRQPQXXXXXXXXXXXXXXXXXXXXXXHEVGAAGAAPDATTGDDKSHLFVFTNDKAGMRGVDKHHVNQVIYEMSKKSRFFKHAEKQDSKVDQKLEDMKRKMRTFDDATRRRLERRIEQAALELSAERARQADRVCVVCDMDQFYAAVEMRDDPALGLAXXXXXXXXLADKPMAVGGEGMICTANYAARRRLEASGPVVVHYWRAVGRYCCTALLKQGALSFGSRAFKGRRKRAYRLWIYVRALNVSAATFGVRSAMPGFIGKQLCPELVSAALRIALVSSIVRCASRRAARLVTSIVFVPPNFTKYKAAAAYSLDEAYLDMTNCVKERIRRXXXXXXXXXXXXXXXXEPVXXXXXXXXXXXXXXXXXXTGQEAGRSSSDGRSKGTGSGSPAGPAVSYDAAELFEEAAAAEVTRLTASAGIACNFMLAKVCADKRKPDGQFCLGSGAGEVADFLRDLPVRKIGGIGKVMEKTLSLVGVRTCGELLDSMAAVWHVFTPRTSEWLLRVAAGVGSPDHDAAAADALPDGAVTRKGISKERTFRELSAPEDLDAKLREICTKLAEDMAERHLQGRVVTLKHXXXXXXXXXXXXLMMAVICACATTGYYHSHYLALSAAAPPLFLRARTAVATAQLKTVEFDVLTRAHTSNVWVSTLDQIYAITSKLLRAQLPLRLRLMGVRVSQFRGQVNEPPDPRQPLLNSFLRKPADGSGGSSSAPHAGGAXXXXXXXXXXXXXXSMSTVAQQQQCSGDAGRAEAGAPAAAAADLDESAEGSGDDDFVQFDDSDLSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQCPICGRAVAGLNFELNMHVDLCLNSAAVRGAVREASASDIGASRKRRRIEDFF 2826
            MEKLNPYKQRQRQPQXXXXXXXXXXXXXXXXXXXXXXHEVGAAGAAPDATTGDDKSHLFVFTNDKAGMRGVDKHHVNQVIYEMSKKSRFFKHAEKQDSKVDQKLEDMKRKMRTFDDATRRRLERRIEQAALELSAERARQADRVCVVCDMDQFYAAVEMRDDPALGLAXXXXXXXXLADKPMAVGGEGMICTANYAARRRLEASGPVVVHYWRAVGRYCCTALLKQGALSFGSRAFKGRRKRAYRLWIYVRALNVSAATFGVRSAMPGFIGKQLCPELVSAALRIALVSSIVRCASRRAARLVTSIVFVPPNFTKYKAAAAYSLDEAYLDMTNCVKERIRRXXXXXXXXXXXXXXXXEPVXXXXXXXXXXXXXXXXXXTGQEAGRSSSDGRSKGTGSGSPAGPAVSYDAAELFEEAAAAEVTRLTASAGIACNFMLAKVCADKRKPDGQFCLGSGAGEVADFLRDLPVRKIGGIGKVMEKTLSLVGVRTCGELLDSMAAVWHVFTPRTSEWLLRVAAGVGSPDHDAAAADALPDGAVTRKGISKERTFRELSAPEDLDAKLREICTKLAEDMAERHLQGRVVTLKHXXXXXXXXXXXXLMMAVICACATTGYYHSHYLALSAAAPPLFLRARTAVATAQLKTVEFDVLTRAHTSNVWVSTLDQIYAITSKLLRAQLPLRLRLMGVRVSQFRGQVNEPPDPRQPLLNSFLRKPADGSGGSSSAPHAGGAXXXXXXXXXXXXXXSMSTVAQQQQCSGDAGRAEAGAPAAAAADLDESAEGSGDDDFVQFDDSDLSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQCPICGRAVAGLNFELNMHVDLCLNSAAVRGAVREASASDIGASRKRRRIEDFF
Sbjct:    1 MEKLNPYKQRQRQPQXXXXXXXXXXXXXXXXXXXXXXHEVGAAGAAPDATTGDDKSHLFVFTNDKAGMRGVDKHHVNQVIYEMSKKSRFFKHAEKQDSKVDQKLEDMKRKMRTFDDATRRRLERRIEQAALELSAERARQADRVCVVCDMDQFYAAVEMRDDPALGLAXXXXXXXXLADKPMAVGGEGMICTANYAARRRLEASGPVVVHYWRAVGRYCCTALLKQGALSFGSRAFKGRRKRAYRLWIYVRALNVSAATFGVRSAMPGFIGKQLCPELVSAALRIALVSSIVRCASRRAARLVTSIVFVPPNFTKYKAAAAYSLDEAYLDMTNCVKERIRRXXXXXXXXXXXXXXXXEPVXXXXXXXXXXXXXXXXXXTGQEAGRSSSDGRSKGTGSGSPAGPAVSYDAAELFEEAAAAEVTRLTASAGIACNFMLAKVCADKRKPDGQFCLGSGAGEVADFLRDLPVRKIGGIGKVMEKTLSLVGVRTCGELLDSMAAVWHVFTPRTSEWLLRVAAGVGSPDHDAAAADALPDGAVTRKGISKERTFRELSAPEDLDAKLREICTKLAEDMAERHLQGRVVTLKHXXXXXXXXXXXXLMMAVICACATTGYYHSHYLALSAAAPPLFLRARTAVATAQLKTVEFDVLTRAHTSNVWVSTLDQIYAITSKLLRAQLPLRLRLMGVRVSQFRGQVNEPPDPRQPLLNSFLRKPADGSGGSSSAPHAGGAXXXXXXXXXXXXXXSMSTVAQQQQCSGDAGRAEAGAPAAAAADLDESAEGSGDDDFVQFDDSDLSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQCPICGRAVAGLNFELNMHVDLCLNSAAVRGAVREASASDIGASRKRRRIEDFF 942          
BLAST of jgi.p|Trimin1|348140 vs. uniprot
Match: A0A7S2WBD8_9STRA (DNA polymerase kappa n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WBD8_9STRA)

HSP 1 Score: 259 bits (662), Expect = 4.260e-70
Identity = 234/696 (33.62%), Postives = 299/696 (42.96%), Query Frame = 1
Query:  154 GDDKSHLFVFTNDKAGMRGVDKHHVNQVIYEMSKKSRFFKHAEKQDSKVDQKLEDMKRKMRTFDDATRRRLERRIEQAALELSAERARQADRVCVVCDMDQFYAAVEMRDDPALGLAXXXXXXXXLADKPMAVGGEGMICTANYAARRRLEASGPVVVHYWRAVGRYCCTALLKQGALSFGSRAFKGRRKRAYRLWIYVRALNVSAATFGVRSAMPGFIGKQLCPELVSAALRIALVSSIVRCASRRAARLVTSIVFVPPNFTKYKAAA---------------AYSLDEAYLDMTNCVKERIRRXXXXXXXXXXXXXXXXEPVXXXXXXXXXXXXXXXXXXTGQEAGRSSSDGRSKGTGSGSPAGPAVSYDAAELFEEAAAAEVTRLTASAGIACNFMLAKVCADKRKPDGQFCLGSGAGEVADFLRDLPVRKIGGIGKVMEKTLSLV-GVRTCGELLDSMAAVWHVFTPRTSEWLLRVAAGVGSPDHDAAAAD---ALPDG----------AVTRKGISKERTFRELSAPEDLDAKLREICTKLAEDMAERHLQGRVVTLKHXXXXXXXXXXXXLMMAVICACATTGYYHSHYLALSAAAPPLFLRARTAVATAQLKTVEFDVLTRAHTS--NVWVSTLDQIYAITSKLLRAQLPLRLRLMGVRVSQFRGQVNEPPDPRQPLLNSFLRKPADGS 2148
            G + +HLFVFTNDKAGM  VDK  VN+V+YEMSK S +F HA  QD K D+++ D++ K+++   +  RR     E +ALE+  E+ R   RVCVV DMD +YAAVEMRD+P             L DKPMAVGG GMI TANY AR                                                             +GVRSAMPGFI  +LCPEL+                            FV  +F KYK  +                 SLDEAYLD+T  V  R                                           +   +SS    +G G+        S   AEL  +   A    LT SAG+A NF LAK+ +D +KP+GQ  +         FL  +PVRK+GGIGKVMEKTL  V GV T  EL +    ++H  TP++S WLLRVA  +   D   A A+   A+ DG          +V RKGIS ERTF  LS   DL AKL  +C  LAE M+ + L GR VTLK                                                      LKT +F+V +RA T+    +VST + I  +   LL  + PL LRLMG+RVS F+ Q     D  Q  + SF+++ A G+
Sbjct:  126 GSNTAHLFVFTNDKAGMGKVDKSKVNKVVYEMSKDSAYFAHASSQDKKNDKRIHDLREKLQSL--SLSRRSSLASEVSALEIKLEKQRFCRRVCVVVDMDCYYAAVEMRDNP------------HLRDKPMAVGGIGMISTANYKARE------------------------------------------------------------YGVRSAMPGFIALKLCPELI----------------------------FVRSHFDKYKETSDRVLTVLRQYDPHCRMMSLDEAYLDLTEEVSRR-------------------------------------------QVEETSSKANLEG-GAQMELEEMASRVVAELRAKVQEAS-GGLTCSAGLAPNFRLAKIASDVKKPNGQCIVPFHREAAIAFLHSMPVRKVGGIGKVMEKTLKEVFGVETVAELFEKRLELFHCLTPKSSHWLLRVALAIHHDDEAKAMAEWKTAVGDGEDAAEATSVQSVRRKGISCERTFAPLSNRADLQAKLSSLCRTLAEHMSAKALSGRTVTLK------------------------------------------------------LKTTKFEVRSRAATAPAGTYVSTGEDIERLVMPLLEKEFPLSLRLMGIRVSHFKNQFKAL-DAGQRTIGSFMQRGAAGA 619          
BLAST of jgi.p|Trimin1|348140 vs. uniprot
Match: A0A2D4CEH4_PYTIN (DNA polymerase kappa n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CEH4_PYTIN)

HSP 1 Score: 253 bits (647), Expect = 2.390e-69
Identity = 212/662 (32.02%), Postives = 290/662 (43.81%), Query Frame = 1
Query:  151 TGDDKSHLFVFTNDKAGMRGVDKHHVNQVIYEMSKKSRFFKHAEKQDSKVDQKLEDMKRKMRTFDDATRRRLERRIEQAALELSAERARQADRVCVVCDMDQFYAAVEMRDDPALGLAXXXXXXXXLADKPMAVGGEGMICTANYAARRRLEASGPVVVHYWRAVGRYCCTALLKQGALSFGSRAFKGRRKRAYRLWIYVRALNVSAATFGVRSAMPGFIGKQLCPELVSAALRIALVSSIVRCASRRAARLVTSIVFVPPNFTKYKAAA---------------AYSLDEAYLDMTNCVKERIRRXXXXXXXXXXXXXXXXEPVXXXXXXXXXXXXXXXXXXTGQEAGRSSSDGRSKGTGSGSPA---------GPAVSYDAAELFEEAAAAEVTRLTASAGIACNFMLAKVCADKRKPDGQFCLGSGAGEVADFLRDLPVRKIGGIGKVMEKTLSLVGVRTCGELLDSMAAVWHVFTPRTSEWLLRVAAGVGSPDHDAAAADALPDGAVTRKGISKERTFRELSAPEDLDAKLREICTKLAEDMAERHLQGRVVTLKHXXXXXXXXXXXXLMMAVICACATTGYYHSHYLALSAAAPPLFLRARTAVATAQLKTVEFDVLTRAHTSNVWVSTLDQIYAITSKLLRAQLPLRLRLMGVRVS 2064
            T D+ + LFVFT  KAGM+GVDK HV +V++EMSK S FF+++ +Q++KV+ ++ +M  K+     A R  L R+I+Q    L A+R  +  R  VV DMD FYAAVEMRD+P+L              KP+AVGG  M+ T NY AR+                                                            +GVR+AMPGFIGK+LCP+LV                             VPP F +Y A +               A SLDE Y D+T+ +     R                                        + G  S D    G  + +PA            V+    ++FEE      T+LTASAGIA N MLAK+C+D  KP+GQF L      +  F++ L VRKIGGIGKVMEK L  +GV T  +L +    V+HVFTPRT++WLL+VA G+ + +  ++      + A  RK  S+ERTFR L  P  L+   RE+C  L +D+A     G+ VTLK                                                      LK V+F V TRA +++  + + D ++ +  +LLR  LPL+LRLMGVRVS
Sbjct:    3 TADEAAQLFVFTAQKAGMQGVDKAHVQKVVFEMSKDSAFFQNSMRQNAKVEARIAEMTAKLEGLTPARRETLRRQIDQMIATLEAQR--ELGRTKVVVDMDMFYAAVEMRDNPSL------------RGKPVAVGGMSMLSTTNYEARK------------------------------------------------------------YGVRAAMPGFIGKELCPDLV----------------------------LVPPRFEQYTAISQQIRAIVEQYDPDFRALSLDEVYCDITDYMDAHWARYAAHSTAACDLEEEQ------------------------DDVGVKSDDEXXXGAVAVAPALLRQREAVAAAIVAELRQKIFEE------TQLTASAGIAANSMLAKICSDMNKPNGQFVLPFSRDRIVAFMQSLSVRKIGGIGKVMEKVLGALGVETAQDLFERRVEVFHVFTPRTAKWLLQVALGIHASERSSSG----DEDASQRKSYSRERTFRGLRDPXWLEKICRELCDMLEQDLAHGGHGGKTVTLK------------------------------------------------------LKCVDFRVKTRAVSTSRTLRSSDDLFDVACELLRKXLPLKLRLMGVRVS 474          
BLAST of jgi.p|Trimin1|348140 vs. uniprot
Match: A0A6H5KQM2_9PHAE (DNA polymerase kappa n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KQM2_9PHAE)

HSP 1 Score: 251 bits (641), Expect = 4.590e-68
Identity = 240/726 (33.06%), Postives = 301/726 (41.46%), Query Frame = 1
Query:  172 LFVFTNDKAGMRGVDKHHVNQVIYEMSKKSRFFKHAEKQDSKVDQK----------LEDMKRKMRTFDDATRRRLERRIEQAALELSAERARQADRVCVVCDMDQFYAAVEMRDDPALGLAXXXXXXXXLADKPMAVGGEGMICTANYAARRRLEASGPVVVHYWRAVGRYCCTALLKQGALSFGSRAFKGRRKRAYRLWIYVRALNVSAATFGVRSAMPGFIGKQLCPELVSAALRIALVSSIVRCASRRAARLVTSIVFVPPNFTKYKAAA---------------AYSLDEAYLDMTNCVKERIRRXXXXXXXXXXXXXXXXEPVXXXXXXXXXXXXXXXXXXTG-------------------QEAGRSSSDGRSKGTGSGSPAGPAVSYDAAELFEEAAAA---EVTRLTASAGIACNFMLAKVCADKRKPDGQFCLGSGAGEVADFLRDLPVRKIGGIGKVMEKTL-SLVGVRTCGELLDSMAAVWHVFTPRTSEWLLRVAAGVGSPDHDAAAADALPDGAVTRKGISKERTFRELSAPEDLDAKLREICTKLAEDMAERHLQGRVVTLKHXXXXXXXXXXXXLMMAVICACATTGYYHSHYLALSAAAPPLFLRARTAVATAQLKTVEFDVLTRAHTSNVWVSTLDQIYAITSKLLRAQLP-----------LRLRLMGVRVSQFRGQVNEPPDPRQPLLNSFLR-KPADGS--GGSSS 2163
            +FVF+N+KAGM  VDK  VN +IYEMSK S +FK A+ QD K+DQK          + +MK K++      + +L R+ ++ A EL A+R  Q D VC+V DMD FYAAVE+RD P L            ADKP+AVGGE MI T NY AR +                                                            GVRSAMPGFIG++LCPELV                            FV P++ KY   A               AYSLDEAYL++T  + ER+                                       T                    +E    + DGRS    +         ++AA +  E   A   E T+LTAS GI  NFMLAK+ +D  KPDGQ C+G    EV  FL DLPVRKIGG+GKV EK L   +GV TCG+L     AV HV TP TS WL++                  PD         KERTF ELSAP DL  K REIC  LA +MA + L+ +      XXXXXXXX                                                      T+  T + +VS+ D +++  S LL+ ++            LRLRL+GVR S FRGQ   P  P Q  L+ FL  K A+G   GG  S
Sbjct:    1 MFVFSNNKAGMGSVDKEKVNHIIYEMSKNSSYFKQAKLQDDKLDQKACIMRVLNVAVAEMKVKLKALGGVRKAQLTRQADKIATELEAQR--QLDDVCLVIDMDMFYAAVEVRDRPEL------------ADKPVAVGGESMISTTNYHARLK------------------------------------------------------------GVRSAMPGFIGRKLCPELV----------------------------FVKPDYEKYTVVAEQIREIFREYDPRMRAYSLDEAYLNVTKVLCERLGLDGSNAPAGTKEAGVAASAAAAGAPEHVCSVTYEAEADTSRRRRMGSNVMYTEKRYEGDEEDEEEARDGRSWEKRNPRETRRIRLFEAARVLAEEIRARIREATKLTASVGIGPNFMLAKIASDWNKPDGQMCIGGDRAEVLRFLHDLPVRKIGGVGKVQEKCLREALGVVTCGDLFRERGAVIHVMTPHTSRWLIKAC---------------YPD-------AGKERTFGELSAPRDLLDKCREICDSLAAEMATKGLEAKXXXXXXXXXXXXXX------------------------------------------------------TQDSTGHAYVSSADDLFSAASALLQREIQGAAAASAPGGKLRLRLIGVRASGFRGQAGAPVLPGQATLDGFLSSKAAEGGCQGGDES 548          
BLAST of jgi.p|Trimin1|348140 vs. uniprot
Match: A0A8K1FPT7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FPT7_PYTOL)

HSP 1 Score: 244 bits (624), Expect = 6.490e-66
Identity = 208/644 (32.30%), Postives = 278/644 (43.17%), Query Frame = 1
Query:  166 SHLFVFTNDKAGMRGVDKHHVNQVIYEMSKKSRFFKHAEKQDSKVDQKLEDMKRKMRTFDDATRRRLERRIEQAALELSAERARQADRVCVVCDMDQFYAAVEMRDDPALGLAXXXXXXXXLADKPMAVGGEGMICTANYAARRRLEASGPVVVHYWRAVGRYCCTALLKQGALSFGSRAFKGRRKRAYRLWIYVRALNVSAATFGVRSAMPGFIGKQLCPELVSAALRIALVSSIVRCASRRAARLVTSIVFVPPNFTKYKAAAAYSLDEAYLDMTNCVKERIRRXXXXXXXXXXXXXXXXEPVXXXXXXXXXXXXXXXXXXTGQEAGRSSSDGRSKGTGSGSPAGPAVSYDAAELFEEAAAAE-------VTRLTASAGIACNFMLAKVCADKRKPDGQFCLGSGAGEVADFLRDLPVRKIGGIGKVMEKTLSLVGVRTCGELLDSMAAVWHVFTPRTSEWLLRVAAGV----GSPDHDAAAADALPDGAVTRKGISKERTFRELSAPEDLDAKLREICTKLAEDMAERHLQGRVVTLKHXXXXXXXXXXXXLMMAVICACATTGYYHSHYLALSAAAPPLFLRARTAVATAQLKTVEFDVLTRAHTSNVWVSTLDQIYAITSKLLRAQLPLRLRLMGVRVS 2064
            + +FVFT  KAGM+ VDK HV +V+YEMSK S FF+++ KQ+ KV+ ++ +MK K+R    A    L R+I+   L    E  R   R  VV DMD FYAAVEMRD+P+L              KP+AVGG GM+ T NY AR+                                                            FGVR+AMPGFIGK+LCPEL+         ++I    S++   +V       PNFT      A SLDE YLD+T+ ++    +                                      G   GRS SD  +   G              E    A   E       VT+LTASAGIA N MLAK+C+D  KP+GQ+ L      V  F++ LPVRKIGGIGKVMEK L  +G+ T  ++ D    ++H  TPR++ WLL+++ GV    G P                RK  S+ERTFR +  P  L+   RE+C  L +D+AE     + +TLK                                                      LK V+F V TRA +S   + T D ++A   +LLR ++PL LRL+GVR S
Sbjct:   33 AQMFVFTAQKAGMKDVDKEHVQKVVYEMSKDSLFFQNSIKQNQKVEARINEMKLKLRGLTKAKHETLRRQID--PLVAQWETQRDLTRTMVVVDMDMFYAAVEMRDNPSL------------RGKPVAVGGIGMLSTTNYEARK------------------------------------------------------------FGVRAAMPGFIGKELCPELIIVPTNFKKYTTI----SQQVRAIVADY---DPNFT------AMSLDEVYLDITDYMEANWAKY------------------------------------AGAGGGRSESDDEADQDGEEIEDQSHAMNSQRETVAAAIVDEIRRRIHGVTQLTASAGIAANTMLAKICSDINKPNGQYVLPFTRDRVVSFVQGLPVRKIGGIGKVMEKVLGALGITTAKDIYDHRVELFHALTPRSAAWLLQISMGVKQSSGEPSE--------------RKSYSRERTFRGIGDPRWLEKICREVCDMLGKDLAEGGHGAKTLTLK------------------------------------------------------LKCVDFSVRTRAVSSTCIMKTSDDLFAYAIELLRKEMPLELRLLGVRAS 485          
BLAST of jgi.p|Trimin1|348140 vs. uniprot
Match: A0A833RXG3_PHYIN (DNA polymerase kappa n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833RXG3_PHYIN)

HSP 1 Score: 235 bits (599), Expect = 3.670e-64
Identity = 202/664 (30.42%), Postives = 281/664 (42.32%), Query Frame = 1
Query:  166 SHLFVFTNDKAGMRGVDKHHVNQVIYEMSKKSRFFKHAEKQDSKVDQKLEDMKRKMRTFDDATRRRLERRIEQAALELSAERARQADRVCVVCDMDQFYAAVEMRDDPALGLAXXXXXXXXLADKPMAVGGEGMICTANYAARRRLEASGPVVVHYWRAVGRYCCTALLKQGALSFGSRAFKGRRKRAYRLWIYVRALNVSAATFGVRSAMPGFIGKQLCPELVSAALRIALVSSIVRCASRRAARLVTSIVFVPPNFTKYKAAAA---------------YSLDEAYLDMTNCVKERIRRXXXXXXXXXXXXXXXXEPVXXXXXXXXXXXXXXXXXXTGQEAGRSSSDGRSKGTGSGSPAGPAVSYDAAELFEEAAAAEVTRLTASAGIACNFMLAKVCADKRKPDGQFCLGSGAGEVADFLRDLPVRKIGGIGKVMEKTLS-LVGVRTCGELLDSMAAVWHVFTPRTSEWLLRVAAGVGSPDHDAAAADALPDGAVTRKGISKERTFRELSAPEDLDAKLREICTKLAEDMAERHLQGRVVTLKHXXXXXXXXXXXXLMMAVICACATTGYYHSHYLALSAAAPPLFLRARTAVATAQLKTVEFDVLTRAHTSNVWVSTLDQIYAITSKLLRAQLPLRLRLMGVRVSQFRGQVNEPPDPRQP 2109
            S +FVFT DKAGM+GVDK HV +V+++MSK S FF+ + + ++KV+Q++  M+ K+     +  +RL++  +    +L A   R   R  VV DMD FYAAVEMRDDP L             D P+AVGG GMI T NYAAR+                                                            FGVR+AMPGFIGK+LCP+L                             FVP N  KY   AA               +SLDEA LD+T+ + E  ++                E                              +  S  +G  + A   V     ++F+       T+LTASAGIA N MLAK+C+D  KP+GQ+ L      V  F+R+LPVRKIGGIGKVMEKTL+  + V+T G+L D    + H+F+ +T+ WLL+ + GV                   RK  S+ERTF+ LS P+ L+ K  EIC  LA+D+ + +   + VT                                                         K  +F   +R+ +    V T+D +++   +LLR +LPL LRLMGVR +    +   P +P QP
Sbjct:   28 SAMFVFTADKAGMKGVDKQHVQEVVHKMSKDSSFFQKSLRDNAKVEQRVAAMREKLACLTGSQLQRLQQEADARVAQLEA--TRDLSRTIVVVDMDMFYAAVEMRDDPKL------------RDVPLAVGGLGMISTTNYAARQ------------------------------------------------------------FGVRAAMPGFIGKELCPDLH----------------------------FVPVNMKKYAGVAAEIRAVFAEYDPDFEAFSLDEACLDLTDYIAENWQKYISDAMDEIESKESDKE------------------------------EWASTASGRAAIAAVVVRELRKKVFD------CTQLTASAGIAVNSMLAKICSDMNKPNGQYVLPFSRERVMTFIRELPVRKIGGIGKVMEKTLNEALDVQTGGDLFDQRGKIAHLFSGKTAMWLLQTSLGVQERREK-----------QERKSFSRERTFKRLSDPKQLEEKCLEICEMLAKDLEKANKAAKNVTFV------------------------------------------------------FKDTDFARCSRSMSLASAVYTVDDLFSNAVELLRRELPLTLRLMGVRAASLVSRCTSPDNPSQP 488          
BLAST of jgi.p|Trimin1|348140 vs. uniprot
Match: F0VZA0_9STRA (DNA polymerase kappa n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0VZA0_9STRA)

HSP 1 Score: 230 bits (586), Expect = 2.580e-61
Identity = 185/531 (34.84%), Postives = 249/531 (46.89%), Query Frame = 1
Query:  166 SHLFVFTNDKAGMRGVDKHHVNQVIYEMSKKSRFFKHAEKQDSKVDQKLEDMKRKMRTFDDATRRRLERRIEQAALELSAERARQADRVCVVCDMDQFYAAVEMRDDPALGLAXXXXXXXXLADKPMAVGGEGMICTANYAARRRLEASGPVVVHYWRAVGRYCCTALLKQGALSFGSRAFKGRRKRAYRLWIYVRALNVSAATFGVRSAMPGFIGKQLCPELVSAALRIALVSSIVRCASRRAARLVTSIVFV-PPNFTKYKAAAAYSLDEAYLDMTNCVKERIRRXXXXXXXXXXXXXXXXEPVXXXXXXXXXXXXXXXXXXTGQEAGRSSSDGRSKGTGSGSPAGPAVSYDAAELFEEAAAAEVTRLTASAGIACNFMLAKVCADKRKPDGQFCLGSGAGEVADFLRDLPVRKIGGIGKVMEKTLSLVGVRTCGELLDSMAAVWHVFTPRTSEWLLRVAAGVGSPDHDAAAADALPDGAVTRKGISKERTFRELSAPEDLDAKLREICTKLAEDMAERHLQGRVVTLK 1755
            + LFVFT +KAGM  V+  H+ + +YEMSK S FFK++ K + KVDQ+++ M+ ++        R LE RI++    L  E  R   R+ VV DMD FYAAVEMRD+P L               P+AVG  GMI T NY AR+                                                            FGVRSAMPGFIGK+LCP+LV   +R+   S+I        A+ +  I  V  PNFT      A+SLDEA LD+T+  +E  R+                  V                  T QE G    +  +    S       VS     +FEE      T+LTASAGIA N MLAK+C++  KP+GQF L      + +F+R+LPVRK+GGIGKVMEK L+ + + T  E+ D  A ++HVF  RT+ WLLR   G+     ++            RK  S+E TF+ +S  E L      IC  LA+D+AE ++  R +TLK
Sbjct:   56 NELFVFTAEKAGMADVNAEHLRKTVYEMSKDSVFFKNSMKNNDKVDQRIKQMQEQVAKLTQPKIRFLEARIDEIVA-LQLECRRDLTRIKVVIDMDMFYAAVEMRDNPIL------------RHVPLAVGSIGMISTTNYEARK------------------------------------------------------------FGVRSAMPGFIGKKLCPDLVFTPVRMEKYSAI--------AQEIRQIFAVYDPNFT------AFSLDEAALDLTDYTREHWRKY-----------------VSQLSLKDWNHDGWMQDCETRQEGGHEMPESLTMKIASA-----IVSEIRQRIFEE------TQLTASAGIAVNTMLAKICSNIEKPNGQFALEGSKEVILEFIRELPVRKVGGIGKVMEKILAALNITTMQEVFDRRAVLFHVFKERTATWLLRTCLGIQEQQSES-----------ERKSYSRETTFKAVSDFESLKQICASICEHLAQDLAEDNVAARNITLK 460          
BLAST of jgi.p|Trimin1|348140 vs. uniprot
Match: A0A662X8T7_9STRA (DNA polymerase kappa n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X8T7_9STRA)

HSP 1 Score: 232 bits (592), Expect = 4.310e-61
Identity = 206/656 (31.40%), Postives = 283/656 (43.14%), Query Frame = 1
Query:  112 HEVGAAGAAPDATT---GDDKSHLFVFTNDKAGMRGVDKHHVNQVIYEMSKKSRFFKHAEKQDSKVDQKLEDMKRKMRTFDDATRRRLERRIEQAALELSAERARQADRVCVVCDMDQFYAAVEMRDDPALGLAXXXXXXXXLADKPMAVGGEGMICTANYAARRRLEASGPVVVHYWRAVGRYCCTALLKQGALSFGSRAFKGRRKRAYRLWIYVRALNVSAATFGVRSAMPGFIGKQLCPELVSAALRIALVSSIVRCASRRAARLVTSIVFVPPNFTKYKAA-AAYSLDEAYLDMTNCVKERIRRXXXXXXXXXXXXXXXXEPVXXXXXXXXXXXXXXXXXXTGQEAGRSSSDGRSKGTGSGSPAGPAVSYDAAELFEEAAAAEVTRLTASAGIACNFMLAKVCADKRKPDGQFCLGSGAGEVADFLRDLPVRKIGGIGKVMEKTLS-LVGVRTCGELLDSMAAVWHVFTPRTSEWLLRVAAGVGSPDHDAAAADALPDGAVTRKGISKERTFRELSAPEDLDAKLREICTKLAEDMAERHLQGRVVTLKHXXXXXXXXXXXXLMMAVICACATTGYYHSHYLALSAAAPPLFLRARTAVATAQLKTVEFDVLTRAHTSNVWVSTLDQIYAITSKLLRAQLPLRLRLMGVRVS 2064
            H   ++    DA T   G + + +FVFT  KAGM+ VDK HV QV++EMSK S +++ +  ++ KVD+++  M++K+         RL+  ++    +L A   R   R  V+ DMD FYAAVEMRD+P L             D P+AVGG  MI T NY AR+                                                             GVR+AMPGFIGK+LCPEL             V     + AR+   I  V   F +Y  +  A+SLDEA LD+T+ +    R+                                      G+EA                 A   V     ++FE       T+LTASAGIA N M+AK+C+D  KP+GQ+ L      V  F+R+LPVRKIGGIG+VMEKTL   + V T GEL      ++H+F+ +T+ WLLR + G+                   RK  S ERTFR +S P+ L+AK  E+CTKLAED+   +  G+ VTLK                                                      LK+ +F V +R+ +    VST D++YA   +LLR +LPL LRLMGVR +
Sbjct:   14 HVASSSKTDEDAATVEEGAETAEMFVFTVAKAGMKDVDKEHVKQVVHEMSKDSAYYQKSLLRNEKVDERVAAMRQKLTCLTAGQHLRLQGEVDARVAQLEA--TRDLTRTVVMVDMDMFYAAVEMRDNPKL------------RDVPLAVGGTNMISTTNYLARKH------------------------------------------------------------GVRAAMPGFIGKELCPEL-----------QFVPVDMPKYARVAEQIRAV---FAEYDPSFEAFSLDEACLDLTDFMATHWRQYLTVAAAGLRSEEAEQSEEDEQQIKGDGGELQWVSTAVGREA----------------IASAIVRELRQKIFER------TQLTASAGIAVNAMIAKICSDMNKPNGQYALPFTRERVVGFIRELPVRKIGGIGQVMEKTLGGALDVHTGGELFAQRGKLFHLFSEKTASWLLRTSLGLQERRER-----------QERKSFSCERTFRSMSDPQQLEAKCLEMCTKLAEDLQAANRAGKNVTLK------------------------------------------------------LKSTDFAVRSRSVSLVAAVSTADELYAHAVELLRRELPLTLRLMGVRAA 494          
BLAST of jgi.p|Trimin1|348140 vs. uniprot
Match: G4YKE9_PHYSP (DNA polymerase kappa n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YKE9_PHYSP)

HSP 1 Score: 227 bits (578), Expect = 2.810e-60
Identity = 193/632 (30.54%), Postives = 272/632 (43.04%), Query Frame = 1
Query:  172 LFVFTNDKAGMRGVDKHHVNQVIYEMSKKSRFFKHAEKQDSKVDQKLEDMKRKMRTFDDATRRRLERRIEQAALELSAERARQADRVCVVCDMDQFYAAVEMRDDPALGLAXXXXXXXXLADKPMAVGGEGMICTANYAARRRLEASGPVVVHYWRAVGRYCCTALLKQGALSFGSRAFKGRRKRAYRLWIYVRALNVSAATFGVRSAMPGFIGKQLCPELVSAALRIALVSSIVRCASRRAARLVTSIVFVPPNFTKYKAAAAYSLDEAYLDMTNCVKERIRRXXXXXXXXXXXXXXXXEPVXXXXXXXXXXXXXXXXXXTGQEAGRSSSDGRSKGTGSGSPAGPAVSYDAAELFEEAAAAEVTRLTASAGIACNFMLAKVCADKRKPDGQFCLGSGAGEVADFLRDLPVRKIGGIGKVMEKTLS-LVGVRTCGELLDSMAAVWHVFTPRTSEWLLRVAAGVGSPDHDAAAADALPDGAVTRKGISKERTFRELSAPEDLDAKLREICTKLAEDMAERHLQGRVVTLKHXXXXXXXXXXXXLMMAVICACATTGYYHSHYLALSAAAPPLFLRARTAVATAQLKTVEFDVLTRAHTSNVWVSTLDQIYAITSKLLRAQLPLRLRLMGVRVS 2064
            +FVFT DKAGM+GVDK HV +V+++MSK S F++ + + + KV+Q++  M++K+       + RL++  ++    + A   R   +  VV DMD FYAAVEMRDDP L             D P+AVGG  MI T NYAAR+                                                            FGVR+AMPGFIGK+LCPEL    + +   + +       AA++        PNF       A+SLDEA LD+T+ V +  ++                E                                        +PAG A    A          + T+LTASAGIA N MLAK+C+D  KP+GQ+ L      V  FL DLPVRKIGGIGKV EK L+  +GV T GEL +    ++H+FT +T+ WLL+ + GV                   RK  S+ERTFR LS P++L+AK  E+C  LA+D+ + +   + VT  +                                                      K  +F   +R+ T    + T + +Y+   +LLR +LPL LRL+GVR +
Sbjct:    1 MFVFTADKAGMKGVDKQHVQEVVHKMSKDSSFYQKSLRDNEKVEQRVAAMRKKLAGLTGGQQLRLQQEADERVARMEA--TRDLSKTIVVVDMDMFYAAVEMRDDPKL------------CDVPLAVGGMNMISTTNYAARQ------------------------------------------------------------FGVRAAMPGFIGKELCPELHFVPVNMEKYAGV-------AAQVRAVFAQYDPNFE------AFSLDEACLDLTDYVAKNWQKYASVALDDFESKEEVQEEEEQWPS---------------------------------TPAGRAAIAAAVVRELRQKIFDCTQLTASAGIAVNAMLAKICSDMNKPNGQYVLPFTRERVLTFLCDLPVRKIGGIGKVTEKILNEALGVHTGGELFNQRGKIFHLFTEKTAVWLLQTSLGVRERREK-----------QERKSFSRERTFRSLSDPKELEAKCLEVCKMLAKDLEKANKAAKNVTFVY------------------------------------------------------KDTDFARCSRSVTLASAIFTAEDLYSSAVELLRRELPLTLRLLGVRAA 447          
BLAST of jgi.p|Trimin1|348140 vs. uniprot
Match: A0A061R8V8_9CHLO (DNA polymerase kappa n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R8V8_9CHLO)

HSP 1 Score: 228 bits (580), Expect = 3.190e-60
Identity = 222/691 (32.13%), Postives = 283/691 (40.96%), Query Frame = 1
Query:  163 KSHLFVFTNDKAGMRGVDKHHVNQVIYEMSKKSRFFKHAEKQDSKVDQKLEDMKRKMRTFDDATRRRLERRIEQAALELSAERARQADRVCVVCDMDQFYAAVEMRDDPALGLAXXXXXXXXLADKPMAVGGEGMICTANYAARRRLEASGPVVVHYWRAVGRYCCTALLKQGALSFGSRAFKGRRKRAYRLWIYVRALNVSAATFGVRSAMPGFIGKQLCPELVSAALRIALVSSIVRCASRRAARLVTSIVFVPPNFTKYKAAA---------------AYSLDEAYLDMTNCVKERIRRXXXXXXXXXXXXXXXXEPVXXXXXXXXXXXXXXXXXXTGQEAGRSSSDGRSKGTGSGSPAGPAVSYDAAELFEEAAAAEVTRLTASAGIACNFMLAKVCADKRKPDGQFCLGSGAGEVADFLRDLPVRKIGGIGKVMEKTLS-LVGVRTCGELLDSMAAVWHVFTPRTSEWLLRVAAGVGSPDHDAAAADALPDGAVTRKGISKERTFRELSAPEDLDAKLREICTKLAEDMAERHLQGRVVTLKHXXXXXXXXXXXXLMMAVICACATTGYYHSHYLALSAAAPPLFLRARTAVATAQLKTVEFDVLTRAHTSNVWVSTLDQIYAITSKLLRAQLP-----LRLRLMGVRVSQFRGQVNEP--PDPRQPLLNSFLRKPADGSGGSSSA 2166
            K +  VFTN KAGM  VDK  V +V+YEMSK S FF++ +++     +K++++  +          R E+  +    EL A+R  + D+V +  DMD FYAAVE RD+P+L             D PMAVGG GMI TANY ARR                                                            FGVRSAMPGFI ++LCPELV                            FV P+F KY++AA               A SLDEAYLD T   + R                                        TG E                          A EL  +  AA  T LT S GIA N  LAKVC+D  KP+GQF +    G + DFLR LP+RKIGGIGKV E+ LS  + V  CG LLD  A +  + + R + + L V  G+G+ +H     +   DG V RKGIS ERTFR +    +++ KL E+   LAE+MAE  L+GR +TLK                                                      LK  +F V TRA TS  W+ + D I      LLRA+L      LRLRLMG+R+S        P  P+  Q  L  F+ K AD  GGS  A
Sbjct:   35 KKYETVFTNTKAGMDNVDKEKVKKVVYEMSKDSAFFQNEQRKMENSRRKIDELICQAEALTAEQLDRFEKSADDRIAELEAKR--RLDKVWLHVDMDAFYAAVEERDNPSL------------KDVPMAVGGTGMITTANYKARR------------------------------------------------------------FGVRSAMPGFIARRLCPELV----------------------------FVRPDFAKYRSAADETRAIFRELDPDFEAMSLDEAYLDATPAARAR--------------------------------------GLTGAEL-------------------------AEELRHKVLAA--TGLTCSVGIAPNKRLAKVCSDMNKPNGQFEVKPERGAILDFLRALPIRKIGGIGKVAEQMLSEALSVTECGHLLDRRAVIVALCSERAAGFYLEVGLGLGAAEHS----ERPGDGEVGRKGISCERTFRAICTVPEMEQKLAELSAHLAEEMAEEGLRGRSLTLK------------------------------------------------------LKGTDFKVRTRAVTSPGWLCSTDGILEAARGLLRAELRQCPQGLRLRLMGLRMSHLAKLGGAPGTPERGQTTLREFVAK-ADAPGGSERA 499          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348140 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z450_9STRA0.000e+0100.00UmuC domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S2WBD8_9STRA4.260e-7033.62DNA polymerase kappa n=1 Tax=Rhizochromulina marin... [more]
A0A2D4CEH4_PYTIN2.390e-6932.02DNA polymerase kappa n=2 Tax=Pythium insidiosum Ta... [more]
A0A6H5KQM2_9PHAE4.590e-6833.06DNA polymerase kappa n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A8K1FPT7_PYTOL6.490e-6632.30Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A833RXG3_PHYIN3.670e-6430.42DNA polymerase kappa n=1 Tax=Phytophthora infestan... [more]
F0VZA0_9STRA2.580e-6134.84DNA polymerase kappa n=1 Tax=Albugo laibachii Nc14... [more]
A0A662X8T7_9STRA4.310e-6131.40DNA polymerase kappa n=2 Tax=Nothophytophthora sp.... [more]
G4YKE9_PHYSP2.810e-6030.54DNA polymerase kappa n=1 Tax=Phytophthora sojae (s... [more]
A0A061R8V8_9CHLO3.190e-6032.13DNA polymerase kappa n=2 Tax=Tetraselmis sp. GSL01... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_20contigContig_20:506297..520593 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348140|estExt_Genemark1.C_Ctg_200060
KEGG TC3.A.3.2
BRITEko00000,ko00001,ko00002,ko01000,ko01006,ko03400,ko04131
KEGG rclassRC00022,RC00929,RC02834,RC02880
KEGG ReactionR01221,R03425
KEGG ModuleM00532
KEGG Pathwayko00260,ko00630,ko01100,ko01110,ko01130,ko01200,ko03460,ko05200,ko05202,ko05210,ko05212,ko05213,ko05214,ko05216,ko05217,ko05218,ko05220,ko05222,ko05223,ko05224,ko05225,ko05226,map00260,map00630,map01100,map01110,map01130,map01200,map03460,map05200,map05202,map05210,map05212,map05213,map05214,map05216,map05217,map05218,map05220,map05222,map05223,map05224,map05225,map05226
KEGG koko:K00281,ko:K01537,ko:K03511,ko:K14050
EC1.4.4.2,2.5.1.60,2.7.7.7,3.6.3.8
GOsGO:0000003,GO:0000228,GO:0000731,GO:0000785,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0003887,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006296,GO:0006297,GO:0006301,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009607,GO:0009628,GO:0009719,GO:0009790,GO:0009792,GO:0009987,GO:0016020,GO:0016604,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019985,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0033554,GO:0033683,GO:0034061,GO:0034641,GO:0034644,GO:0034645,GO:0034654,GO:0042276,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0046483,GO:0048856,GO:0050896,GO:0051716,GO:0070013,GO:0070987,GO:0071214,GO:0071216,GO:0071478,GO:0071482,GO:0071495,GO:0071704,GO:0071897,GO:0072396,GO:0072402,GO:0072423,GO:0072429,GO:0090304,GO:0090305,GO:0097159,GO:0104004,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576
Preferred namePOLK
DescriptionDNA-directed DNA polymerase activity
COG categoryL
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0389@1|root,KOG2094@2759|Eukaryota
Evalue8.11e-83
Seed ortholog2880.D8LUC4
Hectar predicted targeting categoryother localisation
TranscriptId348462
TrackFilteredModels1
ProteinId348140
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348140gene_4098Tribonema minus UTEX_B_3156 geneContig_20 506297..520593 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4098_20exon_4098_20Tribonema minus UTEX_B_3156 exonContig_20 506297..507096 -
exon_4098_19exon_4098_19Tribonema minus UTEX_B_3156 exonContig_20 508166..508412 -
exon_4098_18exon_4098_18Tribonema minus UTEX_B_3156 exonContig_20 508645..508721 -
exon_4098_17exon_4098_17Tribonema minus UTEX_B_3156 exonContig_20 509173..509307 -
exon_4098_16exon_4098_16Tribonema minus UTEX_B_3156 exonContig_20 510756..510849 -
exon_4098_15exon_4098_15Tribonema minus UTEX_B_3156 exonContig_20 511951..512066 -
exon_4098_14exon_4098_14Tribonema minus UTEX_B_3156 exonContig_20 512699..512851 -
exon_4098_13exon_4098_13Tribonema minus UTEX_B_3156 exonContig_20 513215..513321 -
exon_4098_12exon_4098_12Tribonema minus UTEX_B_3156 exonContig_20 514067..514255 -
exon_4098_11exon_4098_11Tribonema minus UTEX_B_3156 exonContig_20 515375..515417 -
exon_4098_10exon_4098_10Tribonema minus UTEX_B_3156 exonContig_20 515945..516005 -
exon_4098_9exon_4098_9Tribonema minus UTEX_B_3156 exonContig_20 516157..516237 -
exon_4098_8exon_4098_8Tribonema minus UTEX_B_3156 exonContig_20 516687..516787 -
exon_4098_7exon_4098_7Tribonema minus UTEX_B_3156 exonContig_20 517157..517235 -
exon_4098_6exon_4098_6Tribonema minus UTEX_B_3156 exonContig_20 517337..517430 -
exon_4098_5exon_4098_5Tribonema minus UTEX_B_3156 exonContig_20 517556..517591 -
exon_4098_4exon_4098_4Tribonema minus UTEX_B_3156 exonContig_20 518399..518434 -
exon_4098_3exon_4098_3Tribonema minus UTEX_B_3156 exonContig_20 519531..519645 -
exon_4098_2exon_4098_2Tribonema minus UTEX_B_3156 exonContig_20 520180..520248 -
exon_4098_1exon_4098_1Tribonema minus UTEX_B_3156 exonContig_20 520348..520593 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_4098UTR3_4098Tribonema minus UTEX_B_3156 three_prime_UTRContig_20 506297..506346 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4098CDS_4098Tribonema minus UTEX_B_3156 CDSContig_20 520348..520593 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348140Trimin1|348140|estExt_Genemark1.C_Ctg_200060Tribonema minus UTEX_B_3156 polypeptideContig_20 506347..520593 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4098 ID=mRNA_4098|Name=jgi.p|Trimin1|348140|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2879bp|location=Sequence derived from alignment at Contig_20:506297..520593- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGAAGCTGAATCCCTATAAGCAGCGGCAGCGGCAGCCGCAGCAGGA
GCAACAGCAGCAACAGCCCGCGAAGCAACAGGACACAACACCTGCTGCTG
CTGCTGCAAGTCATGAAGTTGGTGCTGCTGGAGCAGCTCCCGACGCCACG
ACGGGGGATGACAAATCCCACTTGTTTGTTTTCACCAATGACAAGGCTGG
CATGAGGGGCGTAGACAAGCATCATGTCAATCAGGTCATCTACGAGATGT
CTAAGAAGAGCCGTTTCTTCAAGCATGCGGAGAAGCAGGACAGCAAGGTG
GATCAGAAGCTGGAGGACATGAAGCGCAAGATGCGCACGTTCGATGACGC
TACCAGGCGGCGGCTGGAGCGCAGGATCGAGCAGGCGGCGCTGGAGCTGA
GCGCCGAGCGCGCCAGGCAAGCGGACAGAGTTTGCGTCGTCTGCGACATG
GACCAGTTCTACGCAGCGGTGGAGATGCGCGACGACCCTGCTCTAGGGCT
AGCGGTGGAGATGCGCGACGACCCCGCTCTCGCCGACAAGCCCATGGCGG
TGGGCGGCGAGGGCATGATCTGCACCGCCAACTACGCAGCGCGCAGGCGC
TTGGAGGCGTCGGGCCCTGTAGTCGTGCACTACTGGCGTGCAGTAGGTAG
GTACTGCTGCACGGCGCTGCTGAAGCAGGGCGCGCTGTCATTTGGCAGCA
GGGCGTTCAAGGGCCGCCGCAAGCGAGCGTACCGACTTTGGATTTACGTG
CGCGCGCTCAATGTGTCTGCGGCGACGTTCGGCGTGCGCAGCGCCATGCC
CGGCTTCATCGGCAAGCAGCTCTGCCCCGAGCTGGTGAGCGCCGCGCTGC
GTATCGCGCTGGTGAGCAGCATCGTGCGCTGCGCGTCGCGTCGCGCCGCG
AGGCTGGTGACCAGCATCGTTTTTGTGCCTCCCAACTTCACCAAATACAA
GGCTGCCGCAGCGTACAGCCTGGACGAGGCATATCTGGACATGACGAACT
GTGTCAAGGAGCGCATCCGGCGCAGGCGCCAGCGGCAGCAGCAGCAGCAG
CCGCACGGGGGCGGAGCTTGTGAACCAGTAACGCCGCCGCTGGCGGTGGC
AGCAGCAGCAGCAGCAGCTGCAGCGGCGGCCGCGACCGGACAAGAAGCAG
GCCGATCGTCAAGTGACGGGCGCAGCAAGGGCACTGGCAGCGGCTCGCCG
GCTGGGCCTGCAGTGTCGTACGACGCTGCAGAGCTGTTTGAGGAGGCGGC
GGCGGCGGAGGTGACGCGCCTGACGGCCAGCGCCGGCATCGCCTGCAACT
TCATGCTGGCCAAGGTCTGCGCCGACAAGCGCAAGCCGGACGGACAGTTC
TGCCTGGGCTCGGGCGCCGGCGAGGTGGCCGACTTTCTCAGGGACCTGCC
CGTGCGCAAGATTGGCGGCATCGGCAAGGTGATGGAGAAGACGCTGTCGC
TGGTGGGCGTGCGCACGTGCGGCGAGCTGCTGGACAGCATGGCCGCCGTG
TGGCACGTCTTCACGCCGCGCACGAGCGAGTGGCTGCTGCGTGTGGCAGC
AGGCGTGGGCAGCCCCGACCACGACGCCGCTGCGGCGGACGCGCTGCCCG
ACGGAGCCGTGACGCGCAAGGGCATCAGCAAGGAGCGCACGTTCCGAGAG
CTGTCCGCTCCGGAGGACCTGGACGCCAAGCTGCGCGAAATTTGCACCAA
GCTGGCGGAGGACATGGCGGAGCGTCACCTGCAGGGGCGCGTCGTGACGT
TGAAGCACATGGTGGAGCGTCACCTCGAGGGGCGCGTCCTGACGCTAATG
ATGGCCGTCATCTGCGCGTGTGCCACCACGGGCTACTACCACTCCCACTA
TCTCGCGCTCAGCGCCGCTGCGCCCCCGCTTTTCTTGCGCGCGCGCACTG
CCGTCGCCACTGCTCAGCTGAAGACGGTGGAGTTCGACGTTCTGACGCGC
GCGCACACGAGCAACGTCTGGGTCTCCACGCTCGACCAGATCTACGCCAT
CACATCTAAGCTGCTGCGCGCGCAGCTGCCGCTGCGCCTGCGGCTCATGG
GCGTGCGCGTGAGCCAGTTCCGCGGGCAGGTGAACGAGCCGCCGGACCCC
CGACAGCCTCTGCTCAACTCCTTTCTGCGGAAGCCAGCGGACGGCAGCGG
CGGCAGCAGCAGCGCTCCACACGCGGGCGGCGCCAGTGCCGGTGGCAGCA
GCGCCAGTGGCGGCAGCGCCGACGGCAGTATGAGCACTGTTGCGCAGCAG
CAGCAGTGCTCAGGAGACGCGGGGCGCGCGGAGGCGGGCGCGCCGGCGGC
AGCGGCGGCGGATCTCGACGAGAGCGCAGAGGGCAGCGGCGACGACGACT
TTGTGCAGTTTGACGATTCAGATCTGAGCGACGATGATGACGATGGCGAC
GAGTTCCGTGGCCCCAGTGCCGCTGCGGCTAGCGGCATTGATGACGGTCG
CGGCGGCAGCGGCGGCGGCGGCGGCGAGGCCAGCGGCAGCAGTGATGGCG
GCGGCGGCAGCGAAGCTGCCATGCGACGCATCAGTGCTGTTGGCGGCGGC
GGCTGCGGCAGCACAAGCGACGGTCAACACGACAGCAGCTCTGTCGATGC
AGCGAGAGTGAATCATGACAGCGCCGCGGCGGGAGGCGCGATGCAGCAGC
AGCAGCAGCAGCAGCAGTGCCCGATATGCGGCAGGGCTGTCGCAGGCTTG
AACTTTGAGCTGAACATGCACGTAGATCTGTGTCTCAATTCGGCAGCTGT
AAGGGGGGCGGTGAGGGAGGCCAGTGCGTCGGACATCGGTGCGTCGCGCA
AGCGGCGGAGGATTGAAGACTTTTTCTGATCCCCGGCGATGCCTGGCGGC
GTCCGTGAATGCGCACCATCCGTTGTTTC
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protein sequence of jgi.p|Trimin1|348140

>Trimin1|348140|estExt_Genemark1.C_Ctg_200060 ID=Trimin1|348140|estExt_Genemark1.C_Ctg_200060|Name=jgi.p|Trimin1|348140|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=943bp
MEKLNPYKQRQRQPQQEQQQQQPAKQQDTTPAAAAASHEVGAAGAAPDAT
TGDDKSHLFVFTNDKAGMRGVDKHHVNQVIYEMSKKSRFFKHAEKQDSKV
DQKLEDMKRKMRTFDDATRRRLERRIEQAALELSAERARQADRVCVVCDM
DQFYAAVEMRDDPALGLAVEMRDDPALADKPMAVGGEGMICTANYAARRR
LEASGPVVVHYWRAVGRYCCTALLKQGALSFGSRAFKGRRKRAYRLWIYV
RALNVSAATFGVRSAMPGFIGKQLCPELVSAALRIALVSSIVRCASRRAA
RLVTSIVFVPPNFTKYKAAAAYSLDEAYLDMTNCVKERIRRRRQRQQQQQ
PHGGGACEPVTPPLAVAAAAAAAAAAAATGQEAGRSSSDGRSKGTGSGSP
AGPAVSYDAAELFEEAAAAEVTRLTASAGIACNFMLAKVCADKRKPDGQF
CLGSGAGEVADFLRDLPVRKIGGIGKVMEKTLSLVGVRTCGELLDSMAAV
WHVFTPRTSEWLLRVAAGVGSPDHDAAAADALPDGAVTRKGISKERTFRE
LSAPEDLDAKLREICTKLAEDMAERHLQGRVVTLKHMVERHLEGRVLTLM
MAVICACATTGYYHSHYLALSAAAPPLFLRARTAVATAQLKTVEFDVLTR
AHTSNVWVSTLDQIYAITSKLLRAQLPLRLRLMGVRVSQFRGQVNEPPDP
RQPLLNSFLRKPADGSGGSSSAPHAGGASAGGSSASGGSADGSMSTVAQQ
QQCSGDAGRAEAGAPAAAAADLDESAEGSGDDDFVQFDDSDLSDDDDDGD
EFRGPSAAAASGIDDGRGGSGGGGGEASGSSDGGGGSEAAMRRISAVGGG
GCGSTSDGQHDSSSVDAARVNHDSAAAGGAMQQQQQQQQCPICGRAVAGL
NFELNMHVDLCLNSAAVRGAVREASASDIGASRKRRRIEDFF*
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mRNA from alignment at Contig_20:506297..520593-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4098 ID=mRNA_4098|Name=jgi.p|Trimin1|348140|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=14297bp|location=Sequence derived from alignment at Contig_20:506297..520593- (Tribonema minus UTEX_B_3156 )
ATGGAGAAGCTGAATCCCTATAAGCAGCGGCAGCGGCAGCCGCAGCAGGA GCAACAGCAGCAACAGCCCGCGAAGCAACAGGACACAACACCTGCTGCTG CTGCTGCAAGTCATGAAGTTGGTGCTGCTGGAGCAGCTCCCGACGCCACG ACGGGGGATGACAAATCCCACTTGTTTGTTTTCACCAATGACAAGGCTGG CATGAGGGGCGTAGACAAGCATCATGTCAATCAGGTCATCTACGAGGTAA GCATCACAGGACGCGATTGGCGCCAAAATGTTTTTGCGGTGTTGTTGTTG CGGAGGCATGCCACGCTCATCGCGCATGTGCTGTCTGCTGCGCAGATGTC TAAGAAGAGCCGTTTCTTCAAGCATGCGGAGAAGCAGGACAGCAAGGTGG ATCAGAAGCTGGAGGTGAGCTGAGCTGAGCTGGGACCTCGACAACAAGTT GAAGTACTTCGAGGACCCCAAATTGTTCACAGCGACAAAGGATGCTCATG TTGGTGGCACTTACGACCAGCATGTCGGCTTACCCCAATGCTGTTGTCAT ATGGCGCATGCGTCAACCAACGAATAGCGTTGCACTGGCACACCTGTCTT GGGAACCAAGCTGTCAAGCAGCACCGCTGTTGACGCGAGTGTTTCCCTGT GTGCAGTGCTCAAAGTCTACTTTCAACAACAATCATTGGGGTTGCCGTTG CTGCAAGTGGCACAGAGGGCACAGCCACGCAGACGTCGACATTTTGTGCG GCTGCATAATCATCAGAACCGCTTATTCGCTGCTTCCTCCATGAAACAGC AAACAACCGCCATGGTCACGCCTATGGACGCTCGACTCTGTTGCAGCAAT CATCCACGCTGTGAAGCACACGCATGCCACCTTCACCACCACGCCTCTCA GCAACGGCGACACGCATGCATTTGCTGCCCGCGCACGTGCGCAAACAGGA CATGAAGCGCAAGATGCGCACGTTCGATGACGCTACCAGGCGGCGGCTGG AGCGCAGGATCGAGCAGGCGGCGCTGGAGCTGAGCGCCGAGCGCGCCAGG CAAGCGGACAGAGGTGAGCCCTAGTTGTAGGCGGACAGAGGTGAGCCTTA GTTGCGAGCAGGGAGCAGGAGCAGGCAGGGTCAGGTTGGAAATAGGGTTG ATGCTGACCATAAGCTGCACAAGCCTGGCATGAGGCGTTCAGGCTGATGT TGGTAACAGGGTTAGCATTCAGCAAACTTGCACAAGCTTAGCACCAGGCG TCCAGACAGAGGTGAGCTGTAGTCCATGCAGGGGGCAGATCACGACAAGG TGAGCGCCACGCAGCGGACAGAGATGAGCCTTGCCATGAACGTCAGTGTA AAATGTAGTCCCATGCAGCGTGCTGAGAAGGACAAGATCAAGATCAGACA AGCAGACACAAGTGGACCCTGGTTACATACAGCGACGAGGCCCCAGGGTG TAGCACCAGGCAAGCACCAGGGAAGCAGCCAGAGGTCAGCTCGAACCTTG CTGACCCATTGCCAGGGACCATGCAGCGTGCAGACTTAGTTGGGGTTAAC GCAGGACAAACAGACAAACGTGGGCCCTATGAAGTCGCATGCAGCGAGCG GATGGGGTTTGGGTAAGAGGCAGGATTAGGAGTGCGGACAGGGTACATAT TACGTGTAGTAGATCTATTGTTGTGCGGCTTCCGCGGGCAGCCGCATTCA ATGCGCGCACGGCAGTCGCACTGAGCAGCCGCTGGAGGCAAGATGACGCC TAACCCTAACCCTAGGTGGCAGGGGACGTCGACCGCGCTGCGCACAGACA ATAGTGCGTTGGCCGCCGGAGGCTCTGTGTACGGTCCGCTTGGGTTGTGC ATGCTTACTGCGCCTTGACGCATTCGCCACTGGCCGTGCGGACATGAAGC AGCGCGCTTCAACGCATCCCCCTGCATTGGGGCCAGTGCGAGGGGTATGG TCTCACAGGCGCCGCAGCACAGCACAGCGCTGGAAGGGCGCGCTAGGGCC AAGCGCTGCCTTGACTGCCACTGCACAAGGCGGTTGCGGGGCGTCATGCG AGCGCGCTCGCGCACTCGGAAACGCTGCAGCGCTTCGTTGCGCAACGCGT GCACGCGCACTGCAAATCTGAGCGCTGCTGCCTGTGTCTGCCTCCCTCTG CCTGCGCAGTTTGCGTCGTCTGCGACATGGACCAGTTCTACGCAGGTGAG AGAGGCCCCTACATACTTACCCCTGCCCCCAGCAGGCCTTTATGTCACAC AAATCGGCGAATCGGCAGCCGTCAAGTTGGCAGTCTTGCAGAGCTGCTGA CTGCTGCTCTGTGGCCGCCACCGTCGCAGCGATGGAGATGCGTGACGACG ACCTCGCTCCAGCACTAGGTTTGGCGGCATTGTGGCCGCCGCACCCGTGC CTCCGCGCATCGAGCGCTGCTGACCGGCGCTGCGCCGCTCGTGCTGCCGC CGCCGCCACAGCTTCCCAGCGGTGGCAATGCGCGGCGATCCCGGCTATGG CTAGGTTTAGGGCTTCAGCTCCGCATAGCGCCGCTGCGCGCTGCTGCCCG TTGACCACTCATGTGCAGCAGAACAGTGTCTGTTGTAGCAGCGTACTTGT CTGTGTGTTTCATGTAAGATCGGCGTGCTGTATTGTGCATTTATCCTCAG TTGAGTGTGCTATAGCCCTGCTGACTGCCACTCTGTGGCCGCCGCCGCCG CTGCAGCGGTGGAGATGCGCGATGACGACCCCACACTCCCTTGGAACCAC AGCCAGCGCTACGATAATCATGGCGTTGCGGCCGCCGCATGCGTGCCGCC ATGCGTTGAGCGCTGCTGATCGCTTCTCCGCCGCTTGCGCTGCCGCCGCC ATCGCCAGTGGTGGCAACGCGCGATGACCCCGCGCTAAGGCTAGCTTTAG GGCTGCAGCGCTATTAAACTGCTGATGGCGGCGCTGAATCCGCATCGCGG AGCTGCGTGCTCAGCACTGCTGACTGCTGCTCTGTGGCCGCCGCCGTCGC AGCGGTGGAGATGCGCGACGACCCTGCTCTAGGGCTAGGTTTAGGACCAC AGCTGATGCTACGATATCGATGGCATCGCAGCCGCCGCATGCGTGCCGCC GCGTATGGAGCTCTGCTGACCAATGCTCCGCCGCTCGCGCCGCCGCCGCC GCCGCCATCGCAGCGGTGGAGATGCGCGACGACCCCGCTCTCGCCGACAA GCCCATGGCGGTGGGCGGCGAGGGCATGATCTGCACCGCCAACTACGCAG CGCGCAGGTGCGTGGATCTGGTAGGCAGGTACATGTATATACCTACACCT ACTGTAGTTGAGCGCTGCACTACTGGCAGTAGGCAGGTACGCTGCTCCGC ATGCGCAGGCGCTTGGAGGCGTCGGGCCCTGTAGTCGTGCACTACTGGCG TGCAGTAGGTAGGTACTGCTGCACGGCGCTGCTGAAGGTGAGCCTGCTGC GTGGCGCCGGGGCGACGCGCGCAGGTGCGTGGGGGCGCTGAGCGCTGGGT GGTGAGTAGTAGGTATGTAGGTATGGGTGACGCGGCGCGCAGGTGCGCAG AGCGCTGAGCGCTGGGTGGTGACGGGCAGCGCAGGTATGCGCCGCTGCAT GGCATCAGGGTGCTGCGCTGGCAGCGAGCGGCGGATCTCCTAGCCTAACC CTAACCCGCAGTATTGGGGTGCATGCGCTTCCGGAGCTGCACACGCATGT GCGGGCGTGGCCTATGCGATGGATGCGGCGAGAGCGGCGTCCTGACGCAG CATGAGCCACGCGCTCTCCAGCACTCGATCCACGAGCCTCTGCTGTCAAT TGGCAGCAGGGCGCGCTGTCATTTGGCAGCAGGGCGTTCAAGGGCCGCCG CAAGCGAGCGTACCGACTTTGGATTTACGTGCGCGCGCTCAATGTGTCTG CGGCGACGTCCGCTTCTGCTCTGTCGCCGTTGCATCAGGCCCGCCATCTG CTCCCCGCTCGGGGTCCTGGCACTCACACCACCACCCTGGCGATTCGCAG CCGCCTTTGCTTGACACCTCCGTTTGCCGACACCCGGCGCCACCGTCCCC CACCAATGGCACCAGCTTCTCATCTGCCACATGTGCCGAGCGCTGACCCC AGCGCCAAAACCCTCATGACGCTCGTGTGCAGCCGGGGCACCGGAGGCGC GCATCAGCGCTACTTGTATCGCCAGTGCGCGCCAACGCACTGCCAGGCAT GCTTGCTGCGCAGTCAGCGCATCGGTACCGCTGCGTCATACGTCTTCAAA TTTCACACTGACAGTCGGTGTCTGCCTGCAGTGCGAAGTCTGCTTGCACT TGTAACCGACGCTGACTGCCGCTGCCTCCATGCAATTCGTTCGTTCGTGC GGGCAGGTTCGGCGTGCGCAGCGCCATGCCCGGCTTCATCGGCAAGCAGC TCTGCCCCGAGCTGGTGAGCGCCGCGCTGCGTATCGCGTGAGGCCGCTGA GCATCGCTGCGCATTTGCGTTGAGCCGTGACGCTGTTGAGCACTGTTTTT CGGTAGCAGTTCCCTCCTCAAACCTACCCGTATCTCTGCACATGCTGCTC AAAGGTCAATGCCTACTATACCCGCATCCTGCCACGAGGCTGGTGAGCAG CATCGTGCGCTGCGCGTCGCGTCGCGCCGCGAGGCTGGTGACCAGCATCG TACGCTGCGCATTGCGTTCAGCCCTGAGGCTTCTCAGCAGCGTTCAGTGC CGTGCGTCGCGGCAAGCGGCGAGGCTCGACCCGCCCTAGCGCTGGGACTT GCATTGCCTCGTGCCCATGCTGCTGGTGAGCATCGTTGAATGGGCAGCCG TGACTCAGGGCGTGTGTCGAGCAATTAGTCACTTTCCGATGGCAGAGCGC ATGCATTGGTGGCCCCAGCACAGCGGTCAGGGCGCGACTGGGGGCGACAC CTTTCAGGGTGGAGTCTACAGTCAAGTATGACCGTAAGTGGCCGGAGGTT GCACCAGCAGGAAGCCAAATGCGGGCGCCTTCATGTGCATTCCTTGGTGT CTCCATAGTATTCAGGTCTTGTCAGCATTCCAACAGCATGTGTTGGTGAG TTGGTGCTACCACCAAACCGAAGGAGCGATGACGTCCTCAGCGCCATAGC TTGCTGCAATGGGCGCCGAATTTCGGTTACAGCTTGCACACCGGTGCTCT CCCACCCTTCCTCTTTGCGCATGCAGGTTTTTGTGCCTCCCAACTTCACC AAATACAAGGCTGCCGCAGGTGAGATGAATACATACATACCTGCACAGCC TTGCAGGGTCAAAGTCGCGCCGAAGGGCTTGGGTTAGGGTTAGGGTTAAG GCACAAAGACGACAGTGTGCTCTGGCTCTAGGCTTGCACATACCCATTTG CGGCGCTCGATGTCTCATAGCAGCACGAAGCTCCACAGCGATCATCATGC GCGTCGCCGTCAAAGGCGCATGATGTGGCAACGGCATACCATGATGTGCA TGCCCGTTCGCGAGGCTTGCGTCCCTCAAAAGAATCAGGCATGAAGTCGA CAGCGTGCTGTGTGTCCCAACCTGCACGTACGCATGTGCCGCCCGTGATG CTCAGTGGCAGCATGATGCTCCAATGCAATGCGCGTTGCTACCATGCGTG TCGCCGCCAAACGCGCATGGTGTCTCGAACCCGCGCACACCCACAATGTA TGTACATGCCCGTATGCGGTGATGCTCAGCGGTGTGTGCGCAACGCCCAT CCTGCACGGCCACAATACAAGTCGTGCTGCCACGCTAGCTTTGAGAAGGC ATGTCGCAGCCATGATGCTCCACAGCGACCATCATATACGTCGCCTCCAA CGTACTTCTAGACATACCTGTGCATACCTATATGTACCTGCATGCGACAG CAGCATGTCCCGTCCCAACCATGCCTGACCCTAACCCTAACCATGTACCG CGGCATGCGATCCGCAGCGTTGGGCGCGTCGTGCTCAGCGGGCATGGAAT AGAGGATTTTGATGGCAATTGCCCATCCTGATTTGACGCCGCAGACCTCT GTATACTTGCGAAGCTCGGTCTCCATATCCTGTGGGCGCCGCAGCGTCCC GTCGTTTCCGTGTCCAACGTGCAGTCCCTCCCTGTCATACAGCTCCGCTT GGGGGGGGCAGACGCGGTCGACAACTTTCGCGCGGTGTCCGTGTGCACCA GTCTCATGATGCTTCGGAAGCGATCGCCATGCGCGTTGCCTCTGCCCCAG GCATATGCATACATAGCGGTGTGCATCGTGCTCAACCTGCATGGGAGCGA GGATTCTAATGGCAATTGCTTCATAAATGCTTTGATGCCGCAGACCAGAT TCAGGCAGTGTTTGCAGAATATGACCCGCATTGCCGAGCGTACAGCCTGG ACGAGGCATATCTGGACATGACGAACTGTGTCAAGGAGCGCATCCGGCGC AGGCGCCAGCGGCAGCAGCAGCAGCAGCCGCACGGGGGCGGAGCTTGTGA ACCAGTAACGCCGCCGCTGGCGGTGGCAGCAGCAGCAGCAGCAGCTGCAG CGGCGGCCGCGACCGGACAAGAAGCAGGTACAGGGTCAACAGATGACTTT TTGTTACAGAAAGGTGTATTTTTGGAGACGTTATTGCAGCCGTGCACACA TGTCATGTACCCGCAGGTCTGATGAGCCGATGCAGGTTTGCGTGCGCGCC TGCCTTCCCTCTTGCAAGACGCATGAGCATGTTACTGGCGGGATCAGGTT GCTGGTAGCCCCCTCAATGTAGCCCCCCCCCCCCCCCCCCCCGCCCCCCC ATCCCATCCCCATGCTGTGTACATTTGCTCAGGTGCCGGCGCTGCCGAAG CTGGTATCTGCCCCTTTCAAACATCATCCCAAGGCACAGACACCCCACGT CCCTTCGATAAGCTTGACAGCGCTCAGCGGATCGCTAGGCCCCTATTCCT GCCCCCCCGCAGCGAAACGCAATGTCAAATGCAAATGCCAAGGCGCACAA GTACCTATGTCATGCTTGACAGCACTCGGCGGCCAGATGCACCCCTGGTA ATTGCACCCCTGGCCCCCTGCATTGCACCCGCGCGCTCGTGCAGGTGACT CTTTGCGATCACGTGCGGAGCGCTGCTGCGTTGCATGCGTACACGACGTG CTGCGGATGGGCATGCAATATGATACCACACGGCGATGTCCATGCCTGCA CCCCCCCCCCCTCAACCCCCTGCCAACTGCCCCCCCCCCCCCCCCCCCCC CCCTGGACGCCCCCACCACTCCCCATGCAGACGCCGCCGCTGCCCGTGGC CCTCATACCCCCATTGCTGAAGGCCGATCGTCAAGTGACGGGCGCAGCAA GGGCACTGGCAGCGGCTCGCCGGCTGGGCCTGCAGTGTCGTACGACGCTG CAGAGCTGTTTGAGGAGGCGGCGGCGGCGGTGGAGGAGATGCGGGCGCGC ATCAAGGCGAGTCACATGCCTCGTACTTCAATTTGCAGTAGGGACTTGAA TGTCTAGTACGCTTCTTTGGGCGTCGACTGTGCACGTCACGTGTTTAGTA AATGCCCCCACTGCCTCTGATACCCCTCCCGACCGCCCGCACATCTCAGG TAGGTATGTTGCTCGACAAGTGCATCTCCTACATCGGGACTATTGCAGGC ATATAGCGTTGGCAGAATGGGGTACACTGATGCCAGTCGTGTGACGCGCA GGAGCTGACGCGCCCCACCTTGAAGTTCTGCTCATCGCGCGCCCTAAACA AGCAAACTTCACGTGTGATGCAACTTCACGTGTGACGCGCAGGAGGTGAC GCGCCTGACGGCCAGCGCCGGCATCGCCTGCAACTTCATGCTGGCCAAGG TCTGCGCCGACAAGCGCAAGCCGGACGGACAGTTCTGCCTGGGCTCGGGC GCCGGCGAGGTGGCCGACTTTCTCAGGGACCTGCCCGTGCGCAAGGTCAG AACCAGGGTTAGGGTTATGGTCAGGTAGGGTCAGGCGAAGTGACGACTTC TTCAGGGGCCTGCCCGTGCGCAAGGTCAGAACTAGGGTCAGGGTTGCAGT TGGGTCCAACAGGTAGGGTCAGGCAAGGTGGCCGCCTTCCTCAGGGACTC CAAAAGGTCAGAAGTGGGGTTTGGGTTGGGTCAGGTCCAGGAGGTAGGGG GTCACGATCAGGATCAGGTGCGGCGGCCGACATCCTCAGGGACCTGCTGG TCCGCAAGGATAAAACTAGGGTTAGGTTCAGTGAAAGTTGCTGCCAGTGC ACGCCCCGCGTGTACGTGCGCACCCACACCACCGCCCGGACTGTCGTTGC AGCGGTGCAGATTGGCGGCATCGGCAATGTGATCATCATCAGGAGAAGAT GGATGGTTACTTCTGAGCGTTGCTGCAGGAGCGACCCGTACGTGTTTGCC TGCGCGTCGTGCAATCAATCATGCACGCGTCTGTCACTGCCGCACTGCAT ATTGGCGGCATCGGCAAGCTGATGGAGAAGCCGCTGTCGCTTCTGAGCGT TGCTGTAGAAACGCCCCTGCGTGCACACCGCGTGTGCGCATGCACTCACA CATGCGGTTCGCTATTGCCCTGCTCAGATTGGCGGCATCGGCAAGGTGAT GGAGAAGACGCTGTCGCTGGTGGGCGTGCGCACGTGCGGCGAGCTGCTGG ACAGCATGGCCGCCGTGTGGCACGTCTTCACGCCGCGCACGAGGTGGGTG TGTAGGTAGCTAGCACAGCATGCACACACTTGTTGAAATTGTTTGTACAC ACAGTTTTCAGGTAGTTGAAGTGATGTAGATGAAGCGTGCACACACTCGT TGAAATGGTTACGCACAGTTGAAGTGATGTATTTGAAGTTGCTGGACAGC AGGCCGCAGCGTGGCACGTGTTCACGCCGCGCACGAGGTACTTCTACGCG AGGGCTGTTACACAAGATGTCTGTAATCTTAAAGGTCTGGTTGAATTTTG AACTATGTGTGACCATCTATGGCCAATGTTTACGCCTAGACGTCATTTAT TGCTTCAAGTTGTTTACTAGAAGTACTTGAAATAAACTTGGCAGGTTATT GGACATAATCATCTCTCTCGCGTTCAAGCTGCTGGCCAGCTTGGCCGCCG CGTGGCACGTCTTGACGCAGCGCACGAGGTGCGTAGGCAGCCAGTGCAGC GCGTGACACACTTCGAGGCGTTGACCTCGTGCGCGTAGGTGGCCAGCGCA GCGTGTGTACAAACTTCGGAAGCGTCGTCCTTCGAAGCAGTGATGCACAG CACCTGAAGCATGTAGGTGGTGAGAGTGATGTCGTTGAAGTATGCGCCAC GTTGCATCGCTCGCTGTGCCCTGCGCATGTCGCGCCACAATGGTGGGTAT GTTTTTTACCGTCCACTGTCATCCACGAAAGCCTGTGAGCATGGTGTTAT CTGATCAAACCCAAGCTTTTTGCGCCAGCGCATTCGTTCTGCATGCCTCA ATAGCGCAGTTGCAGGGTAAGGGTTAGCCCTAACCCTAACCCTAATCCTA AGACCCCCGCCGCACACAGCCAAATATCGGCGCTGTTCAGCTCAGATGAC AGGCATTTTTCTGCTTGCTCACATGCCCCGTGTGATCGCAGCGAGTGGCT GCGTGTACACACATGTATGTAGGTGTTGAAGTATCGGCGCGCAATGCTCA GCTCACCTCACTTGAGTGCCCCGCGTGACCGCAGCAAGTGGCTGCTGCGC GTGCATATGTGTATGTAGGTACACATCAGCGCATCGGCGCACAACGCTCA GCTCAGCGTGCCCTGCATTTCCCTTGTGACTGTGCCCGCCGCAGCGAGTG GCTGCTGCGTGTGGCAGCAGGCGTGGGCAGCCCCGACCACGACGCCGCTG CGGCGGACGCGCTGCCCGACGGAGCCGTGACGCGCAAGGTGAAGTTGACT TTCCATTTCCATGCTTTACTCTGAAGTATTGACTCATATACTTGAAGTGT ATTGCGGCGGACGCGCTACCCGATGGAGCCGTGACGCGCAAGGTGAAGTT GACGTTACAATGCACATATATTGAAGTATGGCCTGAAATATATTGCGGTG GATGCGCTGCCCGACGGAGCCGTGACGTGCAAGGTGAAGTTGACTCTCCA ATGCGCATACTTCGAAGTATCGATATGTCATGATTTATTTATTGTGAGAC CGCCACGGCGGACGTGCTGTCGAACGGAGCTGTGACACGCCAGGTAAAGT TGACTTCCAATGCACATAGAAGTATGATTTTTGAAGTGTTGGTATACATA TACATATATTGTGAGACCCTACTGAATGTTGTCGATGTTACTGATGAAGA AAAATGGTGATTTGGGATTCTCGCAGGCATGAGAAACACTGCCGCATTGC TCAACGCCTCTGTCTGTTTGTAACTGTCTAGCAACCACAAAGCAGCATCA AAGCAGGGCTGGCGTGTCGGCGAGTGATGTCCACCATTGCAGCGCATTTC AGACCGCGTGACACCGCACCTATTTACATTCACGTCAAGCCTAGTTAAGG CTACAGGTGAAGTCACGTTCCCCTACCCCTGGCCTCTCCTGATCGCTTGT GCTGTTGAGATCGGTCTACACCTCGCCCTGAGCACTGCCGCTCAAGTGTA TTGTGCAGGCGCCCTTGTCTGCGCGCTGCGCGACAGCGCTCACCAACGGC TGCTGGGCACTGCCCACATTACTGCCGCCGACAAGGCGCCACCTCAAGGC GCATACCGCAATTAGCGAGCGTCAATCAGCAGCCCCTCTCGAAAGCTGTC GTTGAGTGCCTAACCCTAACCCCAACCTTAGCTCAGCCCTCCAAGCACCG CTTCACTCATACGCAGCACCATCGCTTCACTTCACATGCTGCATGCCGGC TTTCAACAGCAGCGACAAAGCGTCACCTCGATGCGCACACCGCAATCAGC GAGTGTCCATCAGCAGCCCCTTTCGCAAGCTGTTGTTGAGTGCCTAACCG TAACCCCAAACCCTAGCCCAGCCCTCCGAGGACTGCTTCACTCATACACA GCACCAGCGCTCCACTTCTGTTGGAATATGAGATGGTCCAATACTTCGTG GGTAGGGCACGGTCCAGTTCTAAGGGTTTCACTAGGAAGTTCTGGCAAGT TCTTGAAGGTTCTGGTGCCCCAACGGAACGGAAGGTTCCCGCTGGCCGTA AGGCTGGTTTGGTGTCAGCGATCATATCACTTGTTCTTATCCCAGCTTGA GGCGCCTGCCGGCGGTCATGCATGGCTGCTCTCCTCGCTCTCTGCGCGCC CACAATTTTACAATACTTCAAACGATACTCGCCGGCGTCCACCAACAGTT CTTGATGGGTGAAAAACTGCCGCTGAGCACTGTCAGGGCATCAGCAAGGA GCGCACGTTCCGAGAGCTGTCCGCTCCGGAGGACCTGGACGCCAAGCTGC GCGAAATTTGCACCAAGCTGGCGGAGGACATGGCGGAGCGTCACCTGCAG GGGCGCGTCGTGACGTTGAAGGTGAGCATGATACCTTTGCAGTTGTCATG TTGATTTCGTAGTGTGCCGCACTCCACGGCATGGTTATGCGAGTGTGCTA CATAGCGGGGCGCTATTTTTAGATGCGAGTCATGACGTTGCAAGTGAGCG TCATCTGCTTGTTCATGTTGAAGTTGTGTGCATCGTTATTAGATACTTGA GGTACGAAGCTTTGACGACAAGCTGTGGGCACCAGGACATTCGCCTTCAG GGCTGGGTCGGCACGTTGAAAGTGGGTGTCGTACACTTGTCATGTTGAAG TCGGAAACAGGGAGGTGCACAATCCGTGCACAAACACATTGCGGAACAGC ACCATCTGGGGCGCTTTGTGACGTGGAAGGTGAGCATCATGTACTTGTTA TGCCATGAGCTGTGCACACACATCGCTTTAAAGCACTTGAAGTAGGGAGT TGAACGCGCGACATCTTACGAGCACATGGTGGAGCGTCACCTCGAGGGGC GCGTCCTGACGCTAATGATGGCCGTCATCTGCGCGTGTGCCACCACGGGG TGGCTACTTCAAGCTGCGGGTGCGCACTGGGTAGAGACGCCCCAACATGG GGCGCTTGCCCCTTGCAGCAGATGCCACTGATTGCACAGCTCACCTCTTG TATGCATGTTTGAGTATTGCGGGCGCGTACGGCCCCGCCATGTGGGTATC TAGCAGCACTTCTGGTAGACGTAGGCATGTAGCCGCAAGTACCTCCGCAG CAGCACTGCTCGTACGTCTACCTCCGCACAGCTACTACCACTCCCACTAT CTCGCGCTCAGCGCCGCTGCGCCCCCGCTTTTCTTGCGCGCGCGCACTGC CGTCGCCACTGCTCAGCTGAAGACGGTGGAGTTCGACGTTCTGACGCGCG CGCACACGAGCAACGTCTGGGTCTCCACGCTCGACCAGATCTACGCCATC ACATCTAAGCTGCTGCGCGCGCAGCTGCCGCTGCGCCTGCGGCTCATGGG CGTGCGCGTGAGCCAGTTCCGCGGGCAGGTGAGCGCTGCCGCATCCTAGG TACATAAGGTAAAGGGGAAGGGGGGGGGGGGTTGGGCAGCAGCGTTCACG CGGTTCATGTAACTCTGGCGTCTGGGCTGATGAGCACAAGCTTTGACTAG TTTTGGGGGCAGGTGAGCGCTGCCGCATCTTGCCAGTAGGGAGGTACCTC AGGCAAAGCGGGTTTTTGTTCGGCAACAGCGTTCACGCGGTTCATGTTAC TTTGTCGTCTCAACTGCTGGGCGCAAGATGAACTAATTTTGGGGGCAGGT GAGCGCTGCCACATCCTGCCAGTAGGTAGGTGTCCAGTGTGGAATTGCGC CTGGCATCAGTTTTTCAGCGTAGTGCATGCAATTTGTGTGCACGAGCGTG TTGATGTACGCGCACTTGTTGCCTGCCTGCCTGCTTTCAAGGAAGTGTGT CTGATGCTGTAGCCAGCCAAGCTTGAGGTACAATGCGGCGAGCTCAAGCT GTCAGTGGAGACATTGTCCCTGATCAGAAGGCAGTGGGAGTCTTGTTTCT TGTTGCTGCCAGCAATTCAACATCACGCAGTATGAACTTCAACTTCATAC CTCAGAAGGAGACGTGCCAAGAGCAGGGGATTCGCGCATAAACTCACTGC TACGTCACGATGGTCGTCCATCAAAACAACTGCAGGTTTCATGACGTCTT CTTGGTCATGACAACAGCCCTCAAGGAATGCGCCAGCTGCAAAATTTGAG TTTTGGGTAGCTCTACGTTTTAACTTTGAAGTATTTGGGTTCCTCTATGA TATATAATTTGAGCCGTGGGTGCACATTGCTCAGACCGCATGACCAAACC TTGTGGCGCCTACGTTCACAAGTATCCTTCAACAATGTGTTCTGAAGTGC GGTGGCCCGCGTGTATGCACCCACACCTCCCATACAGTGCACTCGCTGCA GCTGATCAACAGGACGCGCAGCTCAAAGCCCAACCTTCTGTGACCCTGTC GTCGCAATTTTGAAATGCCTGAGGCGCCCCTGGTGTGCGGCACCATTTGT CGATGATGCTCATAAAGGGGGGGAACTGCGTATCTGACACTCCACAGGTG AACGAGCCGCCGGACCCCCGACAGCCTCTGCTCAACTCCTTTCTGCGGAA GCCAGCGGACGGCAGCGGCGGCAGCAGCAGCGCTCCACACGCGGGCGGCG CCAGTGCCGGTGGCAGCAGCGCCAGTGGCGGCAGCGCCGACGGCAGTATG AGCACTGTTGCGCAGCAGCAGCAGTGCTCAGGAGACGCGGGGCGCGCGGA GGCGGGCGCGCCGGCGGCAGCGGCGGCGGATCTCGACGAGAGCGCAGAGG GCAGCGGCGACGACGACTTTGTGCAGTTTGACGATTCAGATCTGAGCGAC GATGATGACGATGGCGACGAGTTCCGTGGCCCCAGTGCCGCTGCGGCTAG CGGCATTGATGACGGTCGCGGCGGCAGCGGCGGCGGCGGCGGCGAGGCCA GCGGCAGCAGTGATGGCGGCGGCGGCAGCGAAGCTGCCATGCGACGCATC AGTGCTGTTGGCGGCGGCGGCTGCGGCAGCACAAGCGACGGTCAACACGA CAGCAGCTCTGTCGATGCAGCGAGAGTGAATCATGACAGCGCCGCGGCGG GAGGCGCGATGCAGCAGCAGCAGCAGCAGCAGCAGTGCCCGATATGCGGC AGGGCTGTCGCAGGCTTGAACTTTGAGCTGAACATGCACGTAGATCTGTG TCTCAATTCGGCAGCTGTAAGGGGGGCGGTGAGGGAGGCCAGTGCGTCGG ACATCGGTGCGTCGCGCAAGCGGCGGAGGATTGAAGACTTTTTCTGATCC CCGGCGATGCCTGGCGGCGTCCGTGAATGCGCACCATCCGTTGTTTC
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Coding sequence (CDS) from alignment at Contig_20:506297..520593-

>mRNA_4098 ID=mRNA_4098|Name=jgi.p|Trimin1|348140|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=2829bp|location=Sequence derived from alignment at Contig_20:506297..520593- (Tribonema minus UTEX_B_3156 )
ATGGAGAAGCTGAATCCCTATAAGCAGCGGCAGCGGCAGCCGCAGCAGGA
GCAACAGCAGCAACAGCCCGCGAAGCAACAGGACACAACACCTGCTGCTG
CTGCTGCAAGTCATGAAGTTGGTGCTGCTGGAGCAGCTCCCGACGCCACG
ACGGGGGATGACAAATCCCACTTGTTTGTTTTCACCAATGACAAGGCTGG
CATGAGGGGCGTAGACAAGCATCATGTCAATCAGGTCATCTACGAGATGT
CTAAGAAGAGCCGTTTCTTCAAGCATGCGGAGAAGCAGGACAGCAAGGTG
GATCAGAAGCTGGAGGACATGAAGCGCAAGATGCGCACGTTCGATGACGC
TACCAGGCGGCGGCTGGAGCGCAGGATCGAGCAGGCGGCGCTGGAGCTGA
GCGCCGAGCGCGCCAGGCAAGCGGACAGAGTTTGCGTCGTCTGCGACATG
GACCAGTTCTACGCAGCGGTGGAGATGCGCGACGACCCTGCTCTAGGGCT
AGCGGTGGAGATGCGCGACGACCCCGCTCTCGCCGACAAGCCCATGGCGG
TGGGCGGCGAGGGCATGATCTGCACCGCCAACTACGCAGCGCGCAGGCGC
TTGGAGGCGTCGGGCCCTGTAGTCGTGCACTACTGGCGTGCAGTAGGTAG
GTACTGCTGCACGGCGCTGCTGAAGCAGGGCGCGCTGTCATTTGGCAGCA
GGGCGTTCAAGGGCCGCCGCAAGCGAGCGTACCGACTTTGGATTTACGTG
CGCGCGCTCAATGTGTCTGCGGCGACGTTCGGCGTGCGCAGCGCCATGCC
CGGCTTCATCGGCAAGCAGCTCTGCCCCGAGCTGGTGAGCGCCGCGCTGC
GTATCGCGCTGGTGAGCAGCATCGTGCGCTGCGCGTCGCGTCGCGCCGCG
AGGCTGGTGACCAGCATCGTTTTTGTGCCTCCCAACTTCACCAAATACAA
GGCTGCCGCAGCGTACAGCCTGGACGAGGCATATCTGGACATGACGAACT
GTGTCAAGGAGCGCATCCGGCGCAGGCGCCAGCGGCAGCAGCAGCAGCAG
CCGCACGGGGGCGGAGCTTGTGAACCAGTAACGCCGCCGCTGGCGGTGGC
AGCAGCAGCAGCAGCAGCTGCAGCGGCGGCCGCGACCGGACAAGAAGCAG
GCCGATCGTCAAGTGACGGGCGCAGCAAGGGCACTGGCAGCGGCTCGCCG
GCTGGGCCTGCAGTGTCGTACGACGCTGCAGAGCTGTTTGAGGAGGCGGC
GGCGGCGGAGGTGACGCGCCTGACGGCCAGCGCCGGCATCGCCTGCAACT
TCATGCTGGCCAAGGTCTGCGCCGACAAGCGCAAGCCGGACGGACAGTTC
TGCCTGGGCTCGGGCGCCGGCGAGGTGGCCGACTTTCTCAGGGACCTGCC
CGTGCGCAAGATTGGCGGCATCGGCAAGGTGATGGAGAAGACGCTGTCGC
TGGTGGGCGTGCGCACGTGCGGCGAGCTGCTGGACAGCATGGCCGCCGTG
TGGCACGTCTTCACGCCGCGCACGAGCGAGTGGCTGCTGCGTGTGGCAGC
AGGCGTGGGCAGCCCCGACCACGACGCCGCTGCGGCGGACGCGCTGCCCG
ACGGAGCCGTGACGCGCAAGGGCATCAGCAAGGAGCGCACGTTCCGAGAG
CTGTCCGCTCCGGAGGACCTGGACGCCAAGCTGCGCGAAATTTGCACCAA
GCTGGCGGAGGACATGGCGGAGCGTCACCTGCAGGGGCGCGTCGTGACGT
TGAAGCACATGGTGGAGCGTCACCTCGAGGGGCGCGTCCTGACGCTAATG
ATGGCCGTCATCTGCGCGTGTGCCACCACGGGCTACTACCACTCCCACTA
TCTCGCGCTCAGCGCCGCTGCGCCCCCGCTTTTCTTGCGCGCGCGCACTG
CCGTCGCCACTGCTCAGCTGAAGACGGTGGAGTTCGACGTTCTGACGCGC
GCGCACACGAGCAACGTCTGGGTCTCCACGCTCGACCAGATCTACGCCAT
CACATCTAAGCTGCTGCGCGCGCAGCTGCCGCTGCGCCTGCGGCTCATGG
GCGTGCGCGTGAGCCAGTTCCGCGGGCAGGTGAACGAGCCGCCGGACCCC
CGACAGCCTCTGCTCAACTCCTTTCTGCGGAAGCCAGCGGACGGCAGCGG
CGGCAGCAGCAGCGCTCCACACGCGGGCGGCGCCAGTGCCGGTGGCAGCA
GCGCCAGTGGCGGCAGCGCCGACGGCAGTATGAGCACTGTTGCGCAGCAG
CAGCAGTGCTCAGGAGACGCGGGGCGCGCGGAGGCGGGCGCGCCGGCGGC
AGCGGCGGCGGATCTCGACGAGAGCGCAGAGGGCAGCGGCGACGACGACT
TTGTGCAGTTTGACGATTCAGATCTGAGCGACGATGATGACGATGGCGAC
GAGTTCCGTGGCCCCAGTGCCGCTGCGGCTAGCGGCATTGATGACGGTCG
CGGCGGCAGCGGCGGCGGCGGCGGCGAGGCCAGCGGCAGCAGTGATGGCG
GCGGCGGCAGCGAAGCTGCCATGCGACGCATCAGTGCTGTTGGCGGCGGC
GGCTGCGGCAGCACAAGCGACGGTCAACACGACAGCAGCTCTGTCGATGC
AGCGAGAGTGAATCATGACAGCGCCGCGGCGGGAGGCGCGATGCAGCAGC
AGCAGCAGCAGCAGCAGTGCCCGATATGCGGCAGGGCTGTCGCAGGCTTG
AACTTTGAGCTGAACATGCACGTAGATCTGTGTCTCAATTCGGCAGCTGT
AAGGGGGGCGGTGAGGGAGGCCAGTGCGTCGGACATCGGTGCGTCGCGCA
AGCGGCGGAGGATTGAAGACTTTTTCTGA
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