mRNA_4082 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|162457
Unique NamemRNA_4082
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|162457 vs. uniprot
Match: A0A836CHF8_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHF8_9STRA)

HSP 1 Score: 688 bits (1775), Expect = 5.060e-250
Identity = 347/347 (100.00%), Postives = 347/347 (100.00%), Query Frame = 1 
Query:    1 MEPPHREQELGGAQFQTVVKFGEIKTLRYPNLVKGYLDQGFQVVMVMEFLDDEVETNLDLIAQGYYDDYIYQFIDEMIADGNRLVTIRPLHEMNGDWYAWGTQAGGNNDIPTFIAAWQHIHRVFASKRANVQFQLAYNCKNGQNDDTPFTAWWPGAQYVDMVVCSGYNRAGSPGYEAVEWQSFEEMFAPAYAQMAALNPTVPLGIGETSTVELAGYDKAQWIRDAFASMATAFPRLRQATWFLQNKNDGKWDLNSAEQIAAFSEGLLAYTPQNLPQELYNYLPLTDANGDGILNGDDAPPPPLPIDLNDNGVIDPAEVLPDSAAPTXXXXXXXXXXXXXXXXAALLP 1041
            MEPPHREQELGGAQFQTVVKFGEIKTLRYPNLVKGYLDQGFQVVMVMEFLDDEVETNLDLIAQGYYDDYIYQFIDEMIADGNRLVTIRPLHEMNGDWYAWGTQAGGNNDIPTFIAAWQHIHRVFASKRANVQFQLAYNCKNGQNDDTPFTAWWPGAQYVDMVVCSGYNRAGSPGYEAVEWQSFEEMFAPAYAQMAALNPTVPLGIGETSTVELAGYDKAQWIRDAFASMATAFPRLRQATWFLQNKNDGKWDLNSAEQIAAFSEGLLAYTPQNLPQELYNYLPLTDANGDGILNGDDAPPPPLPIDLNDNGVIDPAEVLPDSAAPTXXXXXXXXXXXXXXXXAALLP
Sbjct:    1 MEPPHREQELGGAQFQTVVKFGEIKTLRYPNLVKGYLDQGFQVVMVMEFLDDEVETNLDLIAQGYYDDYIYQFIDEMIADGNRLVTIRPLHEMNGDWYAWGTQAGGNNDIPTFIAAWQHIHRVFASKRANVQFQLAYNCKNGQNDDTPFTAWWPGAQYVDMVVCSGYNRAGSPGYEAVEWQSFEEMFAPAYAQMAALNPTVPLGIGETSTVELAGYDKAQWIRDAFASMATAFPRLRQATWFLQNKNDGKWDLNSAEQIAAFSEGLLAYTPQNLPQELYNYLPLTDANGDGILNGDDAPPPPLPIDLNDNGVIDPAEVLPDSAAPTXXXXXXXXXXXXXXXXAALLP 347
[Close]
BLAST of jgi.p|Trimin1|162457 vs. uniprot
Match: A0A835Z9M6_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9M6_9STRA)

HSP 1 Score: 622 bits (1604), Expect = 5.340e-223
Identity = 295/324 (91.05%), Postives = 306/324 (94.44%), Query Frame = 1 
Query:    1 MEPPHREQELGGAQFQTVVKFGEIKTLRYPNLVKGYLDQGFQVVMVMEFLDDEVETNLDLIAQGYYDDYIYQFIDEMIADGNRLVTIRPLHEMNGDWYAWGTQAGGNNDIPTFIAAWQHIHRVFASKRANVQFQLAYNCKNGQNDDTPFTAWWPGAQYVDMVVCSGYNRAGSPGYEAVEWQSFEEMFAPAYAQMAALNPTVPLGIGETSTVELAGYDKAQWIRDAFASMATAFPRLRQATWFLQNKNDGKWDLNSAEQIAAFSEGLLAYTPQNLPQELYNYLPLTDANGDGILNGDDAPPPPLPIDLNDNGVIDPAEVLPDSAA 972
            MEP HREQELGGAQFQTVVKFGEIKTLRYPNLVKGYLDQGF+VVMVMEFLDDEV+TNLDLIA GYYDDY+Y+FIDEMI DGNR VTIRPLHE NGDWYAWGTQAGGNNDIPTFIAAWQHIHRVF SKRANVQFQLAYNCK+G NDDTPFTAWWPGAQYVDMVVCSGYNRAGSPGYEAVEWQSFEEMFAPAYAQMAALNPTVPLGIGETSTVELAGYDKAQWIRDAFASMATAFPRLRQATWFLQNK+DG+WDLNS EQIAAFSEGLL YTPQ L Q  +NYLPLTDANGDGI+NGDDAPPPPL ID+N NGVID AEVLP + A
Sbjct:   67 MEPGHREQELGGAQFQTVVKFGEIKTLRYPNLVKGYLDQGFEVVMVMEFLDDEVKTNLDLIADGYYDDYLYRFIDEMIDDGNRAVTIRPLHEFNGDWYAWGTQAGGNNDIPTFIAAWQHIHRVFTSKRANVQFQLAYNCKSGLNDDTPFTAWWPGAQYVDMVVCSGYNRAGSPGYEAVEWQSFEEMFAPAYAQMAALNPTVPLGIGETSTVELAGYDKAQWIRDAFASMATAFPRLRQATWFLQNKDDGEWDLNSEEQIAAFSEGLLQYTPQGLAQTPFNYLPLTDANGDGIINGDDAPPPPLAIDVNANGVIDAAEVLPAAGA 390
[Close]
BLAST of jgi.p|Trimin1|162457 vs. uniprot
Match: A0A835Z4M7_9STRA (Glycoside hydrolase superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4M7_9STRA)

HSP 1 Score: 540 bits (1392), Expect = 8.390e-193
Identity = 252/270 (93.33%), Postives = 260/270 (96.30%), Query Frame = 1 
Query:    1 MEPPHREQELGGAQFQTVVKFGEIKTLRYPNLVKGYLDQGFQVVMVMEFLDDEVETNLDLIAQGYYDDYIYQFIDEMIADGNRLVTIRPLHEMNGDWYAWGTQAGGNNDIPTFIAAWQHIHRVFASKRANVQFQLAYNCKNGQNDDTPFTAWWPGAQYVDMVVCSGYNRAGSPGYEAVEWQSFEEMFAPAYAQMAALNPTVPLGIGETSTVELAGYDKAQWIRDAFASMATAFPRLRQATWFLQNKNDGKWDLNSAEQIAAFSEGLLAYT 810
            MEP HREQELGGAQFQTVVKFGEIKTLRYPNLVKGYLDQGF+VVMVMEFLDDEV+TNLDLIA GYYDDY+Y+FIDEMI DGNR VTIRPLHE NGDWYAWGTQAGGNNDIPTFIAAWQHIHRVF SKRANVQFQLAYNCKNGQNDDTPFTAWWPGAQYVDMVVCSGYNRAGSPGYE VEWQSFE+MFAPAYAQMAALNPTVPLGIGETSTVELAGYDKAQWIRDAFASMATAFPRLRQATWFLQNK+DG+WDLNS EQI AFS+GLL YT
Sbjct:    7 MEPGHREQELGGAQFQTVVKFGEIKTLRYPNLVKGYLDQGFEVVMVMEFLDDEVKTNLDLIADGYYDDYLYRFIDEMIDDGNRAVTIRPLHEFNGDWYAWGTQAGGNNDIPTFIAAWQHIHRVFTSKRANVQFQLAYNCKNGQNDDTPFTAWWPGAQYVDMVVCSGYNRAGSPGYEDVEWQSFEDMFAPAYAQMAALNPTVPLGIGETSTVELAGYDKAQWIRDAFASMATAFPRLRQATWFLQNKDDGEWDLNSEEQITAFSKGLLQYT 276
[Close]
BLAST of jgi.p|Trimin1|162457 vs. uniprot
Match: A0A835Z6S0_9STRA (GH26 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6S0_9STRA)

HSP 1 Score: 407 bits (1045), Expect = 6.960e-127
Identity = 201/328 (61.28%), Postives = 239/328 (72.87%), Query Frame = 1 
Query:    1 MEPPHREQELGGAQFQTVVKFGEIKTLRYPNLVKGYLDQGFQVVMVMEFLDDEVETNLDLIAQGYYDDYIYQFIDEMIADGNRLVTIRPLHEMNGDWYAWGTQAGGNNDIPTFIAAWQHIHRVFASKRANVQFQLAYNCKNGQND-DTPFTAWWPGAQYVDMVVCSGYNRAGSPGYEAVEWQSFEEMFAPAYAQMAALNPTVPLGIGETSTVELAGYDKAQWIRDAFASMATAFPRLRQATWFLQNKN-DGKWDLNSAEQIAAFSEGLLAYTPQNLPQELYNYL-PLTDANGDGILNGDDAPPPPLPIDLNDNGVIDPAEVLPDSAAP 975
            MEP  R+ ELG AQFQ VVKF  ++++RYP LVK YLDQGFQVVMV EFLD+E+ TNL  I  G YDDY+YQF+DE  ADGN+ V IRP+HE NGDWY WGT  GG N    FI AW+H+H VF  K+ANV+FQLAYNC NGQ+D  TPFT WWPG  YVDMVVCSGYNRAG+     +EW +F++++  AY QM AL    PLG+GE S  +  GYDKAQWI DAF      +PR++Q TWFLQNK  DG+WDLNS EQIAAF+ GL  YTPQN  Q L   L PL D N DG++NGDDAPPPP+P+D+N +GVID  + +   AAP
Sbjct: 1046 MEPNARQAELG-AQFQVVVKFQPVQSMRYPFLVKPYLDQGFQVVMVTEFLDNELLTNLWQIGSGKYDDYLYQFMDEHKADGNQEVWIRPMHEFNGDWYPWGTYHGGFNTKKNFIRAWRHVHDVFTVKKANVKFQLAYNCDNGQDDVTTPFTDWWPGMNYVDMVVCSGYNRAGTDENH-MEWLTFQDVYGAAYEQMLALPGYKPLGVGEMSCNDFEGYDKAQWITDAFYDFVNTYPRVKQVTWFLQNKEGDGRWDLNSPEQIAAFANGLKLYTPQNQVQTLLPLLAPLADVNFDGVINGDDAPPPPVPVDINGDGVIDQKDAVGAPAAP 1371
[Close]
BLAST of jgi.p|Trimin1|162457 vs. uniprot
Match: A0A835YWE9_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWE9_9STRA)

HSP 1 Score: 376 bits (966), Expect = 7.440e-127
Identity = 180/312 (57.69%), Postives = 226/312 (72.44%), Query Frame = 1 
Query:    1 MEPPHREQELGGAQFQTVVKFGEIKTLRYPNLVKGYLDQGFQVVMVMEFLDDEVETNLDLIAQGYYDDYIYQFIDEMIADGNRLVTIRPLHEMNGDWYAWGTQAGGNNDIPTFIAAWQHIHRVFASKRANVQFQLAYNCKNGQNDD-TPFTAWWPGAQYVDMVVCSGYNRAGSPGYEAVEWQSFEEMFAPAYAQMAALNPTVPLGIGETSTVELAGYDKAQWIRDAFASMATAFPRLRQATWFLQNKNDGKWDLNSAEQIAAFSEGLLAYTPQNLPQELYNYLPLTDANGDGILNGDDAPPPPLPIDLNDNG 933
            +EP +RE+EL  AQFQ V KFG IKT+RYP LVK YLDQGF+VV+V++FLD  + TNL  I  G YD Y+Y+F DE+I DGNR V +RP+HE NGDWY WGT  GG N I  FI A++H+++V  +K AN++FQL YNC NG ND  TPF+AWWPG   VDMVVCS YNRAG+  +   +WQ++ ++F   Y QMAAL  + PLG+GE  TV +AG DKA WIRDAFA+  T +PR+ Q TWFL++K+DG+WDLNSA++I AF + LL YTPQ LPQ L   +PL D NGDG++N  DAPP P     N  G
Sbjct:   36 LEPVYREEELN-AQFQVVTKFGFIKTMRYPFLVKNYLDQGFKVVLVVQFLDT-LTTNLKQIGDGLYDKYLYKFADELIKDGNREVWVRPMHEFNGDWYPWGTYMGGTNTIQNFIRAYRHVYQVLTAKGANIKFQLGYNCVNGANDKKTPFSAWWPGDDVVDMVVCSAYNRAGTDQFHT-QWQTWPDVFQLGYDQMAALPTSAPLGVGEMGTVGMAGEDKAGWIRDAFAAFPTLYPRVEQITWFLEDKDDGEWDLNSADEIEAFRDSLLQYTPQGLPQVLPAVVPLQDVNGDGLINTVDAPPFPTGSASNSGG 344
[Close]
BLAST of jgi.p|Trimin1|162457 vs. uniprot
Match: A0A836CJI7_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJI7_9STRA)

HSP 1 Score: 385 bits (990), Expect = 9.830e-127
Identity = 188/302 (62.25%), Postives = 219/302 (72.52%), Query Frame = 1 
Query:    1 MEPPHREQELGGAQFQTVVKFGEIKTLRYPNLVKGYLDQGFQVVMVMEFLDDEVETNLDLIAQGYYDDYIYQFIDEMIADGNRLVTIRPLHEMNGDWYAWGTQAGGNNDIPTFIAAWQHIHRVFASKRANVQFQLAYNCKNGQND-DTPFTAWWPGAQYVDMVVCSGYNRAGSPGYEAVEWQSFEEMFAPAYAQMAALNPTVPLGIGETSTVELAGYDKAQWIRDAFASMATAFPRLRQATWFLQNKNDGKWDLNSAEQIAAFSEGLLAYTPQNLPQELYNYLPLTDANGDGILNGDDAPPP 903
            MEP  R+ ELG AQFQ VVKF  ++ +RYP LVK YLDQG++VVMV EFLDD + TNL  I  G YDDY+YQFIDE+  DGNR V IRP+HE NGDWY WGT  GG N I  FI AWQHIH VF  K+ANV+FQLAYNC N Q+D  TPFTAWWPG +YVDMVVCSGYNRAGS     +EW +F++++A AY QMAAL    PLG+GE S  +   YDKAQWIRDAFA   T F R+ Q TWFLQNK+DG+WDLN+ ++I AF + L  YT QN  Q L    P  D N DG++NGDDAP P
Sbjct:   43 MEPNARQAELG-AQFQVVVKFQPVQQMRYPFLVKPYLDQGYEVVMVTEFLDDVLVTNLQEIGDGLYDDYLYQFIDELKDDGNRAVWIRPMHEFNGDWYPWGTYHGGTNTIDNFIRAWQHIHDVFTVKKANVKFQLAYNCDNAQDDVTTPFTAWWPGDEYVDMVVCSGYNRAGSDENH-MEWLTFQDVYANAYNQMAALPGLKPLGVGEMSCNDFGDYDKAQWIRDAFADFDTTFTRVTQVTWFLQNKDDGRWDLNTPDEIQAFGDCLREYTDQNQIQRLPPVPPQVDVNLDGVINGDDAPEP 342
[Close]
BLAST of jgi.p|Trimin1|162457 vs. uniprot
Match: A0A836CGL5_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGL5_9STRA)

HSP 1 Score: 376 bits (966), Expect = 2.270e-126
Identity = 179/300 (59.67%), Postives = 212/300 (70.67%), Query Frame = 1 
Query:    1 MEPPHREQELGGAQFQTVVKFGEIKTLRYPNLVKGYLDQGFQVVMVMEFLDDEVETNLDLIAQGYYDDYIYQFIDEMIADGNRLVTIRPLHEMNGDWYAWGTQAGGNNDIPTFIAAWQHIHRVFASKRANVQFQLAYNCKNGQNDDT-PFTAWWPGAQYVDMVVCSGYNRAGSPGYEAVEWQSFEEMFAPAYAQMAALNPTVPLGIGETSTVELAGYDKAQWIRDAFASMATAFPRLRQATWFLQNKNDGKWDLNSAEQIAAFSEGLLAYTPQNLPQELYNYLPLTDANGDGILNGDDAP 897
            M P  R+ ELG A+FQ VVKF  ++ +RYP LVK +LD GFQ VMVMEFLD    TNL  IA G YD Y+Y+F+DE++ DGNR V +RPLHE NGDWY WGT  GG+N    F  AW+H+H +  +K AN++FQLAYNC NGQND T PF  WWPG QYVDMVVCSGYNRAGS   +  +W +F E+F  AY QM  L    PLG+GETS       DKAQWIRDAF      +PR+   TWFLQNKNDG+WDLNS E+IAAF E L+ YTPQN+PQ+L    P  D NGDG++NGDDAP
Sbjct:   78 MLPVARQAELG-AKFQAVVKFQSVQKMRYPFLVKPHLDAGFQSVMVMEFLDATRHTNLKQIANGLYDKYLYKFVDELMDDGNREVWVRPLHEFNGDWYPWGTYRGGDNTKRMFKRAWRHVHWILTNKGANIKFQLAYNCVNGQNDQTTPFLDWWPGEQYVDMVVCSGYNRAGSDA-DHQQWLTFPEVFGAAYEQMLTLPGMKPLGVGETSCNNFEDNDKAQWIRDAFYDFVNTYPRIEHVTWFLQNKNDGRWDLNSPEEIAAFGESLIEYTPQNIPQDLPPLPPQADINGDGVINGDDAP 375
[Close]
BLAST of jgi.p|Trimin1|162457 vs. uniprot
Match: A0A835YXD8_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXD8_9STRA)

HSP 1 Score: 311 bits (796), Expect = 4.870e-99
Identity = 155/290 (53.45%), Postives = 189/290 (65.17%), Query Frame = 1 
Query:   70 IKTLRYPNLVKGYLDQGFQVVMVMEFLDDEVETNLDLIAQGYYDDYIYQFIDEMIADGNRLVTIRPLHEMNGDWYAWGTQAGGNNDIPTFIAAWQHIHRVFASKRANVQFQ--------------LAYNCKNGQNDDTPFTAWWPGAQYVDMVVCSGYNRAGSPGYEAVEWQSFEEMFAPAYAQMAALNPTVPLGIGETSTVELAGYDKAQWIRDAFASMATAFPRLRQATWFLQNKN-DGKWDLNSAEQIAAFSEGLLAYTPQNLPQELYNYLPLTDANGDGILNGDDA 894
            ++  RYP LVK YLDQGFQVVMV +FLD+E+ TNL  I  G YD+Y+YQF+DE  ADGN+ V I P+HE NGDWY WGT  GG N    F+ AW+H+H VF  K ANV FQ              L    + G+ D  PFT WWPG  YVDMVVCSGYNRAG+     +EW +F++++  AY QM AL    PLG+GE S  +  GYDKAQWI DAF      +PR++QATW+LQNK+ D +WDLNS EQIAAF+ GL  Y PQN P  L    PL D N DG+++  DA
Sbjct:  123 VRNCRYPFLVKPYLDQGFQVVMVTKFLDNELLTNLWQIGSGKYDNYLYQFMDEHKADGNQEVWIMPMHEFNGDWYPWGTYHGGFNSKKNFVRAWRHVHDVFTVKEANVIFQRYAAFCSALSLSARLQLRQRAGRCDHAPFTDWWPGMNYVDMVVCSGYNRAGTDENH-MEWLTFQDVYGAAYKQMLALPGYKPLGVGEMSCNDFEGYDKAQWITDAFYDFVNTYPRVKQATWYLQNKDGDCRWDLNSPEQIAAFANGLKLYAPQNQPPHLL--APLADINCDGVIDQKDA 409
[Close]
BLAST of jgi.p|Trimin1|162457 vs. uniprot
Match: A0A836CHJ5_9STRA (GH26 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHJ5_9STRA)

HSP 1 Score: 299 bits (765), Expect = 1.250e-93
Identity = 156/303 (51.49%), Postives = 184/303 (60.73%), Query Frame = 1 
Query:    1 MEPPHREQELGGAQFQTVVKFGEIKTLRYPNLVKGYLDQGFQVVMVMEFLDDEVETNLDLIAQGYYDDYIYQFIDEMIADGNRLVTIRPLHEMNGDWYAWGTQAGGNNDIPTFIAAWQHIHRVFASKRANVQFQLAYNCKNGQNDDTPFTAWWPGAQYVDMVVCSGYNRAGSPGYEAVEWQSFEEMFAPAYAQMAALNPTVPLGIGETSTVELAGYDK-----AQWIRDAFASMATAFPRLRQATWFLQNKNDGKWDLNSAEQIAAFSEGLLAYTPQNLPQELYNYLPLTDANGDGILNGDDA 894
            MEP  RE ELG A+FQ VVKF  ++ +RYP LVK YLDQGFQVVMV EFLD  ++TNL  I  G YD Y+Y+F+DE++ DGNR V +RP+HE NGDWY WGT  GG N I  F  AW H+H VF +K AN++FQLAYNC+NGQ  DTPF AWWPG  YVDMVVCSGYNRAGS   E + WQ+F+E++ PAY QMA L    PLG+GETS  E    DK      Q  R          P +R+    +                           PQ LPQ L    P  D  GDGI+NGDDA
Sbjct:  147 MEPNAREAELG-AEFQVVVKFQPVQQMRYPFLVKPYLDQGFQVVMVTEFLDPTLKTNLKEIGDGLYDAYLYEFVDELMNDGNREVWVRPMHEFNGDWYPWGTYMGGTNTIANFKRAWLHVHDVFTNKGANIKFQLAYNCENGQGSDTPFKAWWPGENYVDMVVCSGYNRAGSDP-EHMVWQTFQEVYGPAYQQMADLPGRKPLGVGETSCTEFEDNDKHVVPPEQGRRPVGPQQPRRDPGVRRLPARVH--------------------------PQGLPQNLPPLPPQVDVTGDGIINGDDA 421
[Close]
BLAST of jgi.p|Trimin1|162457 vs. uniprot
Match: A0A835YVC0_9STRA (Glycoside hydrolase superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVC0_9STRA)

HSP 1 Score: 253 bits (646), Expect = 9.160e-80
Identity = 126/261 (48.28%), Postives = 165/261 (63.22%), Query Frame = 1 
Query:   34 GAQFQTVVKFGEIKTL--RYPNLVKGYLDQGFQVVMVMEFLDDEVETNLDLIAQGYYDDYIYQFIDEMIADGNRLVTIRPLHEMNGDWYAWGTQAGGNNDIPTFIAAWQHIHRVFASKRANVQFQLAYNCKNGQNDDTPFTAWWPGAQYVDMVVCSGYNRAGSPGYEAVEWQSFEEMFAPAYAQMAALNPTVPLGIGETSTVELAGYDKAQWIRDAFASMATAFPRLRQATWFLQNKNDGKWDLNSAEQIAAFSEGLLAYT 810
            GA+FQTVVK+  +  L  +Y  LVK YLD G  VV+V EF+D     NL  I  G +D  + +FID+  ADGNR V IRP+HE NGDWY+WGT   GN+    F  A+QH+  VF ++ AN +FQL YNC N +ND T F+ WWPG   VDM++CSGYNRAG        WQSF ++++  Y +MAAL+   PLG+ ETS+     Y K QWI+DAF ++   F R+ Q  WFL NK DG W LNS ++  AF + +  Y+
Sbjct:    1 GAKFQTVVKYQSVTGLPGQYKYLVKPYLDAGKSVVLVTEFIDGSY-ANLQAIGDGKFDWALNKFIDDWKADGNRQVWIRPMHEFNGDWYSWGTYRNGNSQA-LFKRAFQHVAYVFKNRGANAKFQLGYNCVNPRNDGTSFSNWWPGGDVVDMILCSGYNRAGLDSNHQ-SWQSFSDVYSSGYYKMAALDGGKPLGVAETSSTTWQSYSKPQWIKDAFNALVNKFTRVEQCNWFLINK-DGNWGLNSDDERHAFGDSINQYS 257
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|162457 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CHF8_9STRA5.060e-250100.00Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A835Z9M6_9STRA5.340e-22391.05Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A835Z4M7_9STRA8.390e-19393.33Glycoside hydrolase superfamily (Fragment) n=1 Tax... [more]
A0A835Z6S0_9STRA6.960e-12761.28GH26 domain-containing protein n=1 Tax=Tribonema m... [more]
A0A835YWE9_9STRA7.440e-12757.69Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A836CJI7_9STRA9.830e-12762.25Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A836CGL5_9STRA2.270e-12659.67Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A835YXD8_9STRA4.870e-9953.45Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A836CHJ5_9STRA1.250e-9351.49GH26 domain-containing protein n=1 Tax=Tribonema m... [more]
A0A835YVC0_9STRA9.160e-8048.28Glycoside hydrolase superfamily (Fragment) n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_20contigContig_20:362993..364810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|162457|e_gw1.20.27.1
DescriptionGlycosyl hydrolase family 26
COG categoryG
Max annot lvl201174|Actinobacteria
EggNOG OGsCOG4124@1|root,COG4124@2|Bacteria,2GMW5@201174|Actinobacteria,4GCSP@85026|Gordoniaceae
Evalue8.76e-34
Seed ortholog2055.JNXA01000001_gene2114
Hectar predicted targeting categoryother localisation
TranscriptId162779
TrackFilteredModels1
ProteinId162457
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|162457gene_4082Tribonema minus UTEX_B_3156 geneContig_20 362993..364810 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|162457Trimin1|162457|e_gw1.20.27.1Tribonema minus UTEX_B_3156 polypeptideContig_20 362993..364810 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4082_3exon_4082_3Tribonema minus UTEX_B_3156 exonContig_20 362993..363320 -
exon_4082_2exon_4082_2Tribonema minus UTEX_B_3156 exonContig_20 363937..364526 -
exon_4082_1exon_4082_1Tribonema minus UTEX_B_3156 exonContig_20 364685..364810 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4082CDS_4082Tribonema minus UTEX_B_3156 CDSContig_20 364685..364810 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4082 ID=mRNA_4082|Name=jgi.p|Trimin1|162457|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1044bp|location=Sequence derived from alignment at Contig_20:362993..364810- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCCCCCACACCGCGAGCAGGAGCTAGGCGGGGCACAGTTTCAGAC
GGTGGTAAAGTTTGGAGAGATCAAAACGCTGCGCTACCCGAACCTTGTCA
AGGGCTATCTGGACCAGGGCTTTCAGGTGGTCATGGTGATGGAGTTCCTG
GACGACGAGGTCGAGACCAACCTGGACCTCATCGCGCAGGGCTACTACGA
CGACTACATCTACCAGTTCATCGACGAGATGATAGCCGACGGCAACAGGC
TCGTCACCATCCGCCCGCTCCACGAGATGAACGGCGACTGGTACGCCTGG
GGCACGCAGGCGGGCGGCAACAACGACATCCCCACCTTCATCGCGGCGTG
GCAGCACATCCACAGGGTCTTCGCGTCCAAGCGCGCCAATGTCCAGTTCC
AGCTCGCCTACAACTGCAAGAACGGCCAGAATGACGACACGCCCTTCACG
GCGTGGTGGCCCGGCGCGCAGTACGTGGACATGGTCGTCTGCAGCGGCTA
CAACCGCGCCGGTTCGCCCGGCTACGAGGCCGTAGAGTGGCAGTCATTCG
AGGAGATGTTTGCGCCAGCCTACGCGCAGATGGCAGCGCTCAACCCGACT
GTGCCCCTCGGCATCGGCGAGACGAGCACTGTGGAGCTGGCGGGCTACGA
CAAGGCGCAGTGGATCCGCGACGCGTTCGCGTCCATGGCCACCGCCTTCC
CGCGCCTGCGCCAAGCCACCTGGTTCCTCCAGAACAAGAACGACGGCAAG
TGGGACCTCAATTCCGCGGAGCAGATCGCCGCCTTCAGCGAGGGCCTCCT
GGCGTACACCCCCCAAAACCTCCCGCAGGAGCTCTACAACTACCTGCCGC
TCACCGACGCGAACGGCGACGGCATCCTCAACGGCGACGACGCGCCGCCG
CCGCCGCTGCCCATCGACCTCAACGACAACGGCGTCATAGACCCCGCGGA
GGTGCTGCCGGACAGCGCGGCGCCCACGGCGGCGCCGACCGCGCAGCCGA
CGGCGGCGCCAACGGCGGCGGCGGCGGCGGCGCTGCTGCCGTAG
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protein sequence of jgi.p|Trimin1|162457

>Trimin1|162457|e_gw1.20.27.1 ID=Trimin1|162457|e_gw1.20.27.1|Name=jgi.p|Trimin1|162457|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=348bp
MEPPHREQELGGAQFQTVVKFGEIKTLRYPNLVKGYLDQGFQVVMVMEFL
DDEVETNLDLIAQGYYDDYIYQFIDEMIADGNRLVTIRPLHEMNGDWYAW
GTQAGGNNDIPTFIAAWQHIHRVFASKRANVQFQLAYNCKNGQNDDTPFT
AWWPGAQYVDMVVCSGYNRAGSPGYEAVEWQSFEEMFAPAYAQMAALNPT
VPLGIGETSTVELAGYDKAQWIRDAFASMATAFPRLRQATWFLQNKNDGK
WDLNSAEQIAAFSEGLLAYTPQNLPQELYNYLPLTDANGDGILNGDDAPP
PPLPIDLNDNGVIDPAEVLPDSAAPTAAPTAQPTAAPTAAAAAALLP*
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mRNA from alignment at Contig_20:362993..364810-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4082 ID=mRNA_4082|Name=jgi.p|Trimin1|162457|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1818bp|location=Sequence derived from alignment at Contig_20:362993..364810- (Tribonema minus UTEX_B_3156 )
ATGGAGCCCCCACACCGCGAGCAGGAGCTAGGCGGGGCACAGTTTCAGAC
GGTGGTAAAGTTTGGAGAGATCAAAACGCTGCGCTACCCGAACCTTGTCA
AGGGCTATCTGGACCAGGGCTTTCAGGTGCGTGCCTCAGCTGTATTTCCT
CAATTATTTGGAACACACAAAATCCTGCAAACACCCTCGGTAGATGCCGG
CGTTCAATACATGCATGCTGACGTGCCAGGACATGATCGGCAGCTGTTTG
ACTCAGCACGTGTAACGTCCCCCCCTCTGTGCAGGTGGTCATGGTGATGG
AGTTCCTGGACGACGAGGTCGAGACCAACCTGGACCTCATCGCGCAGGGC
TACTACGACGACTACATCTACCAGTTCATCGACGAGATGATAGCCGACGG
CAACAGGCTCGTCACCATCCGCCCGCTCCACGAGATGAACGGCGACTGGT
ACGCCTGGGGCACGCAGGCGGGCGGCAACAACGACATCCCCACCTTCATC
GCGGCGTGGCAGCACATCCACAGGGTCTTCGCGTCCAAGCGCGCCAATGT
CCAGTTCCAGCTCGCCTACAACTGCAAGAACGGCCAGAATGACGACACGC
CCTTCACGGCGTGGTGGCCCGGCGCGCAGTACGTGGACATGGTCGTCTGC
AGCGGCTACAACCGCGCCGGTTCGCCCGGCTACGAGGCCGTAGAGTGGCA
GTCATTCGAGGAGATGTTTGCGCCAGCCTACGCGCAGATGGCAGCGCTCA
ACCCGACTGTGCCCCTCGGCATCGGCGAGACGAGCACTGTGGAGCTGGCG
GGCTACGACAAGGCGCAGTGGATCCGCGACGCGTTCGCGTCCATGGCCAC
CGCCTTCCCGCGCCTGCGCCAAGCGTGAGTGCAACCTCATACTTCAAAGT
ACTTCTTTCGCAGTAGGCAGTAGTAGCATCCAGCAATGTGGCTATGTCTT
GAGCCTATGCATGGCCACCCGGTTTCCACGCATGTGCCAAGCTTGAGTGC
AATCTGATACTGTAGCATCAAACATGTGCTTCTGCCTAGGACCTATACGT
GGCCACCACTGGCCTGCGCGTGCACCAAAAATGATTCAACTCAGCGTTGT
TTGGCCAAGCATCTCGCGTGTAGGGTGTCTGCAGGTCGAGGTAGCACAGC
TATGTAGAAGAGCTGCAGTAACCACAACAGCCTCTGCGTGTGTGTACTGG
TAGCATGGCCTGTGGGACCTTTACATCCTCGACAACGGTACACATATTTG
GCGGTGGCGGCGTTTGAGTGGCTGTCGTTGAGACACTTTCAGACTGTCGC
ACGACATGTAGTTCCGTACAGCAAGCTTCAAGTTAGATGCCATTCATCTG
GGCTTTTTCGCGCCCTGAGCGAGAATCAATAAACAGTACACATCCTGCGA
GTGCGGGCACAACACGCACCAAAGCGCTGTTGCCACGCAAAATTCAAGCT
CTGACCTCCCCCCCCCCCCCCCCCCCCCCTCCCCCAACAGCACCTGGTTC
CTCCAGAACAAGAACGACGGCAAGTGGGACCTCAATTCCGCGGAGCAGAT
CGCCGCCTTCAGCGAGGGCCTCCTGGCGTACACCCCCCAAAACCTCCCGC
AGGAGCTCTACAACTACCTGCCGCTCACCGACGCGAACGGCGACGGCATC
CTCAACGGCGACGACGCGCCGCCGCCGCCGCTGCCCATCGACCTCAACGA
CAACGGCGTCATAGACCCCGCGGAGGTGCTGCCGGACAGCGCGGCGCCCA
CGGCGGCGCCGACCGCGCAGCCGACGGCGGCGCCAACGGCGGCGGCGGCG
GCGGCGCTGCTGCCGTAG
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Coding sequence (CDS) from alignment at Contig_20:362993..364810-

>mRNA_4082 ID=mRNA_4082|Name=jgi.p|Trimin1|162457|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1044bp|location=Sequence derived from alignment at Contig_20:362993..364810- (Tribonema minus UTEX_B_3156 )
ATGGAGCCCCCACACCGCGAGCAGGAGCTAGGCGGGGCACAGTTTCAGAC
GGTGGTAAAGTTTGGAGAGATCAAAACGCTGCGCTACCCGAACCTTGTCA
AGGGCTATCTGGACCAGGGCTTTCAGGTGGTCATGGTGATGGAGTTCCTG
GACGACGAGGTCGAGACCAACCTGGACCTCATCGCGCAGGGCTACTACGA
CGACTACATCTACCAGTTCATCGACGAGATGATAGCCGACGGCAACAGGC
TCGTCACCATCCGCCCGCTCCACGAGATGAACGGCGACTGGTACGCCTGG
GGCACGCAGGCGGGCGGCAACAACGACATCCCCACCTTCATCGCGGCGTG
GCAGCACATCCACAGGGTCTTCGCGTCCAAGCGCGCCAATGTCCAGTTCC
AGCTCGCCTACAACTGCAAGAACGGCCAGAATGACGACACGCCCTTCACG
GCGTGGTGGCCCGGCGCGCAGTACGTGGACATGGTCGTCTGCAGCGGCTA
CAACCGCGCCGGTTCGCCCGGCTACGAGGCCGTAGAGTGGCAGTCATTCG
AGGAGATGTTTGCGCCAGCCTACGCGCAGATGGCAGCGCTCAACCCGACT
GTGCCCCTCGGCATCGGCGAGACGAGCACTGTGGAGCTGGCGGGCTACGA
CAAGGCGCAGTGGATCCGCGACGCGTTCGCGTCCATGGCCACCGCCTTCC
CGCGCCTGCGCCAAGCCACCTGGTTCCTCCAGAACAAGAACGACGGCAAG
TGGGACCTCAATTCCGCGGAGCAGATCGCCGCCTTCAGCGAGGGCCTCCT
GGCGTACACCCCCCAAAACCTCCCGCAGGAGCTCTACAACTACCTGCCGC
TCACCGACGCGAACGGCGACGGCATCCTCAACGGCGACGACGCGCCGCCG
CCGCCGCTGCCCATCGACCTCAACGACAACGGCGTCATAGACCCCGCGGA
GGTGCTGCCGGACAGCGCGGCGCCCACGGCGGCGCCGACCGCGCAGCCGA
CGGCGGCGCCAACGGCGGCGGCGGCGGCGGCGCTGCTGCCGTAG
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