mRNA_4064 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|162383 vs. uniprot
Match: A0A836CHT2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHT2_9STRA) HSP 1 Score: 264 bits (675), Expect = 1.410e-89 Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 1 Query: 1 MRLLTHNVLRCAIKGVEEGYPLSIEASEVQMEESPFRPDFVKHIAPTLNWPALRQAVKQVGLPEDMLPEAVSDALLGDEAFLRALHRVLMDVHVVAGALVCPESGRRFPIAHGIPDMMIAEGECPRDDK 387 MRLLTHNVLRCAIKGVEEGYPLSIEASEVQMEESPFRPDFVKHIAPTLNWPALRQAVKQVGLPEDMLPEAVSDALLGDEAFLRALHRVLMDVHVVAGALVCPESGRRFPIAHGIPDMMIAEGECPRDDK Sbjct: 1 MRLLTHNVLRCAIKGVEEGYPLSIEASEVQMEESPFRPDFVKHIAPTLNWPALRQAVKQVGLPEDMLPEAVSDALLGDEAFLRALHRVLMDVHVVAGALVCPESGRRFPIAHGIPDMMIAEGECPRDDK 129
BLAST of jgi.p|Trimin1|162383 vs. uniprot
Match: D7G5K3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5K3_ECTSI) HSP 1 Score: 160 bits (405), Expect = 1.770e-48 Identity = 78/123 (63.41%), Postives = 96/123 (78.05%), Query Frame = 1 Query: 1 MRLLTHNVLRCAIKGVEEGYPLSIEASEVQMEESPFRPDFVKHIAPTLNWPALRQAVKQVGLPEDMLPEAVSDALLGDEAFLRALHRVLMDVHVVAGALVCPESGRRFPIAHGIPDMMIAEGE 369 MRLLTHNVLR +KGV EGYPL IEA++VQM ES + +FVKH+A TL+W AL +A +VG+PE LP A++ LL D +FL ALHRVLMD+HVV G LVCPE+GRRFPIA G+P++M E E Sbjct: 1 MRLLTHNVLRSPMKGVVEGYPLRIEATDVQMVESEVKEEFVKHMATTLDWGALCKAAAEVGMPEGSLPPALTPELLEDSSFLEALHRVLMDMHVVEGTLVCPETGRRFPIAEGVPNLMCTEDE 123
BLAST of jgi.p|Trimin1|162383 vs. uniprot
Match: A0A1Y1INK2_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1INK2_KLENI) HSP 1 Score: 140 bits (353), Expect = 1.310e-40 Identity = 67/123 (54.47%), Postives = 90/123 (73.17%), Query Frame = 1 Query: 1 MRLLTHNVLRCAIKGVEEGYPLSIEASEVQMEESPFRPDFVKHIAPTLNWPALRQAVKQVGLPEDMLPEAVSDALLGDEAFLRALHRVLMDVHVVAGALVCPESGRRFPIAHGIPDMMIAEGE 369 MRLLTHN+L C IKGV +GYPL IEA++ + +E+ F F++HI P L+W ALR+A +GL E LPE V + L DE FLR H VL+++H+ GALVCPE+GRRFP++ GIP+M++ E E Sbjct: 1 MRLLTHNMLACNIKGVTKGYPLKIEATKTEEKETDFNAGFLRHIYPKLDWKALREAAASLGLEE--LPEQVEPSQLEDEDFLRRFHHVLLEIHLEEGALVCPETGRRFPVSKGIPNMLLNEDE 121
BLAST of jgi.p|Trimin1|162383 vs. uniprot
Match: A0A2V0PLC9_9CHLO (Multifunctional methyltransferase subunit n=2 Tax=Selenastraceae TaxID=35466 RepID=A0A2V0PLC9_9CHLO) HSP 1 Score: 137 bits (344), Expect = 3.160e-39 Identity = 65/123 (52.85%), Postives = 87/123 (70.73%), Query Frame = 1 Query: 1 MRLLTHNVLRCAIKGVEEGYPLSIEASEVQMEESPFRPDFVKHIAPTLNWPALRQAVKQVGLPEDMLPEAVSDALLGDEAFLRALHRVLMDVHVVAGALVCPESGRRFPIAHGIPDMMIAEGE 369 M+LLTHN+L C IKGV+ G+PL IEA EV E+ F PDF++HI P L W A + + +G E LP+AV + L +EAFLRA H L++VH+ GALVCPE+GRRF ++ GIP+M++ E E Sbjct: 1 MKLLTHNMLACTIKGVQNGFPLKIEAEEVVEREADFDPDFLRHIFPKLEWAAFLEGARALGCAEG-LPDAVPEGALEEEAFLRAFHHALLEVHLEEGALVCPETGRRFIVSKGIPNMLLNEDE 122
BLAST of jgi.p|Trimin1|162383 vs. uniprot
Match: A0A2P6VL84_9CHLO (Multifunctional methyltransferase subunit TRM112 At1g22270 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VL84_9CHLO) HSP 1 Score: 135 bits (341), Expect = 8.760e-39 Identity = 58/124 (46.77%), Postives = 91/124 (73.39%), Query Frame = 1 Query: 1 MRLLTHNVLRCAIKGVEEGYPLSIEASEVQMEESPFRPDFVKHIAPTLNWPALRQAVKQVGLPEDMLPEAVSDALLGDEAFLRALHRVLMDVHVVAGALVCPESGRRFPIAHGIPDMMIAEGEC 372 M+LLTHN+L C IKGV+ G+P IEA +V+++E+ F PDF++HI P + W AL +A +G+ + LP ++ +L D+AF++ H L++VH+ GALVCPE+GR+FP++ GIP++++ E EC Sbjct: 1 MKLLTHNMLACHIKGVQNGFPFKIEAEKVEVQEADFEPDFLQHIFPRIQWAALCEAAAAMGV--EGLPAEATEEMLEDDAFMKKFHHALLEVHLQEGALVCPETGRKFPVSAGIPNLLLTEDEC 122
BLAST of jgi.p|Trimin1|162383 vs. uniprot
Match: A0A2P6TH25_CHLSO (Multifunctional methyltransferase subunit TRM112 At1g22270 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TH25_CHLSO) HSP 1 Score: 135 bits (340), Expect = 1.000e-38 Identity = 58/117 (49.57%), Postives = 87/117 (74.36%), Query Frame = 1 Query: 22 VLRCAIKGVEEGYPLSIEASEVQMEESPFRPDFVKHIAPTLNWPALRQAVKQVGLPEDMLPEAVSDALLGDEAFLRALHRVLMDVHVVAGALVCPESGRRFPIAHGIPDMMIAEGEC 372 +L+C IKGV+ GYPL +EA +V+ E F PDF++HI P +NWPALR+A +G+ + LPE+ S+ LL D+ FL+ H L++VH+ G+LVCPE+GR+FP++ GIP++++ E EC Sbjct: 1 MLQCHIKGVQNGYPLKVEAEKVETREMDFEPDFLRHIFPRINWPALREAAAAMGVSD--LPESASEELLEDDDFLKKFHHALLEVHLEEGSLVCPETGRKFPVSGGIPNLLLQEDEC 115
BLAST of jgi.p|Trimin1|162383 vs. uniprot
Match: W7U893_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U893_9STRA) HSP 1 Score: 135 bits (339), Expect = 1.930e-38 Identity = 65/123 (52.85%), Postives = 87/123 (70.73%), Query Frame = 1 Query: 1 MRLLTHNVLRCAIKGVEEGYPLSIEASEVQMEESPFRPDFVKHIAPTLNWPALRQAVKQVGLPEDMLPEAVSDALLGDEAFLRALHRVLMDVHVVAGALVCPESGRRFPIAHGIPDMMIAEGE 369 MRLL+HNVLR KGV +GYPL IEA+++ + ++ F++H+ PT+++P LR A + +GL P + S L DEAFLRALH+ L DVHV+ G+LVCPESGRRF I GIPDMM+ + E Sbjct: 1 MRLLSHNVLRNTAKGVVDGYPLKIEAAQIDVRDTEPDLTFIRHLLPTISFPVLRSAAEDLGLDAAAFPASYSTTLGEDEAFLRALHKALFDVHVLEGSLVCPESGRRFSIRGGIPDMMLTDEE 123
BLAST of jgi.p|Trimin1|162383 vs. uniprot
Match: W7TQC2_9STRA (TRM112-like protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQC2_9STRA) HSP 1 Score: 136 bits (343), Expect = 2.060e-38 Identity = 62/123 (50.41%), Postives = 97/123 (78.86%), Query Frame = 1 Query: 1 MRLLTHNVLRCAIKGVEEGYPLSIEASEVQMEESPFRPDFVKHIAPTLNWPALRQAVKQVGLPEDMLPEAVSDALLGDEAFLRALHRVLMDVHVVAGALVCPESGRRFPIAHGIPDMMIAEGE 369 MRL+THN+L+ +KGV G+PL IEA +V+++E+ F +FV+++ P ++WPALR A K++G+ E LPE + +A D++FL+ +H++L+DVHV+ G+LVCPE+GRRFPI +GIP+M++ E E Sbjct: 52 MRLITHNMLKSNVKGVINGFPLRIEAEKVEVKETEFNSEFVQNLLPKVDWPALRGASKELGMDE--LPEEMDEANKTDDSFLQLVHKLLLDVHVLEGSLVCPETGRRFPINNGIPNMLLHEDE 172
BLAST of jgi.p|Trimin1|162383 vs. uniprot
Match: A0A388LY57_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LY57_CHABU) HSP 1 Score: 134 bits (338), Expect = 2.500e-38 Identity = 64/123 (52.03%), Postives = 89/123 (72.36%), Query Frame = 1 Query: 1 MRLLTHNVLRCAIKGVEEGYPLSIEASEVQMEESPFRPDFVKHIAPTLNWPALRQAVKQVGLPEDMLPEAVSDALLGDEAFLRALHRVLMDVHVVAGALVCPESGRRFPIAHGIPDMMIAEGE 369 MRLLTHN+L C +KGV +GYPL IEA ++ +E+ F PDF++ I P L+W AL + + L E LPE ++L DEAFL+ LH VL++V++ GALVCPE+GRRFP++ GIP+M++ E E Sbjct: 1 MRLLTHNMLTCNVKGVTKGYPLKIEAVRLEKKEAEFNPDFLRRIFPKLDWKALYETALSLDLDE--LPEQAEPSMLEDEAFLQKLHHVLLEVNLEEGALVCPETGRRFPVSKGIPNMLLNEDE 121
BLAST of jgi.p|Trimin1|162383 vs. uniprot
Match: A0A7S2Z8T9_9CHLO (Hypothetical protein n=3 Tax=Eukaryota TaxID=2759 RepID=A0A7S2Z8T9_9CHLO) HSP 1 Score: 135 bits (339), Expect = 3.330e-38 Identity = 64/125 (51.20%), Postives = 89/125 (71.20%), Query Frame = 1 Query: 1 MRLLTHNVLRCAIKGVEEGYPLSIEASEVQMEESPFRPDFVKHIAPTLNWPALRQAVKQVGLPEDMLPEAVS-DALLGDEAFLRALHRVLMDVHVVAGALVCPESGRRFPIAHGIPDMMIAEGEC 372 M+LLTHN+L C IKGV YP +EAS+V+ E F PDF++ + P L+W A R+ + + +P+ LPE+VS D L DE FLR+ H VL++V V GAL+CPE+GRRFPI+ GIP++++ E EC Sbjct: 20 MKLLTHNLLECHIKGVTNKYPFKVEASQVETCECDFNPDFLRRMYPKLDWKAFRETAEGL-VPDTQLPESVSEDMLKSDEGFLRSFHHVLLEVEVEEGALICPETGRRFPISKGIPNLLLNEDEC 143 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|162383 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_4064 ID=mRNA_4064|Name=jgi.p|Trimin1|162383|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=390bp|location=Sequence derived from alignment at Contig_20:216053..217461- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCGTCTGCTGACCCACAACGTGCTGCGCTGCGCCATCAAAGGAGTGGAback to top protein sequence of jgi.p|Trimin1|162383 >Trimin1|162383|e_gw1.20.76.1 ID=Trimin1|162383|e_gw1.20.76.1|Name=jgi.p|Trimin1|162383|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=130bp MRLLTHNVLRCAIKGVEEGYPLSIEASEVQMEESPFRPDFVKHIAPTLNWback to top mRNA from alignment at Contig_20:216053..217461- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_4064 ID=mRNA_4064|Name=jgi.p|Trimin1|162383|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1409bp|location=Sequence derived from alignment at Contig_20:216053..217461- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_20:216053..217461- >mRNA_4064 ID=mRNA_4064|Name=jgi.p|Trimin1|162383|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=390bp|location=Sequence derived from alignment at Contig_20:216053..217461- (Tribonema minus UTEX_B_3156 )back to top |