mRNA_4039 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|148807 vs. uniprot
Match: A0A835Z390_9STRA (Mur ligase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z390_9STRA) HSP 1 Score: 236 bits (601), Expect = 9.970e-79 Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1 Query: 1 FTSPHLHTVRERIRLGAELIPRSDLARITASLVPGFQAEPWMIFFDRLLAVALTWFQERGAELVILEAGVGGRYDPTNIILPPALCIVTNISLDHEGMLGGTIEASGRAPSAVVRR 348 FTSPHLHTVRERIRLGAELIPRSDLARITASLVPGFQAEPWMIFFDRLLAVALTWFQERGAELVILEAGVGGRYDPTNIILPPALCIVTNISLDHEGMLGGTIEASGRAPSAVVRR Sbjct: 1 FTSPHLHTVRERIRLGAELIPRSDLARITASLVPGFQAEPWMIFFDRLLAVALTWFQERGAELVILEAGVGGRYDPTNIILPPALCIVTNISLDHEGMLGGTIEASGRAPSAVVRR 116
BLAST of jgi.p|Trimin1|148807 vs. uniprot
Match: A0A7S3HLR6_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HLR6_9STRA) HSP 1 Score: 125 bits (315), Expect = 9.750e-32 Identity = 51/115 (44.35%), Postives = 81/115 (70.43%), Query Frame = 1 Query: 1 FTSPHLHTVRERIRLGAELIPRSDLARITASLVPGFQAEPWMIFFDRLLAVALTWFQERGAELVILEAGVGGRYDPTNIILPPALCIVTNISLDHEGMLGGTIEASGRAPSAVVR 345 FTSPH+HT RER+++ ELI SD+ R+ ++ +PW++FFD LLA+A+ +F E+ + +ILE+G+GGRYD TN + PA C++T+ISLDH+ +LG T+E + +++ Sbjct: 116 FTSPHMHTARERVKVNRELIAHSDMIRLGNEVLAELSPQPWVVFFDLLLALAVRYFNEKNVQYMILESGIGGRYDTTNFVDNPAACVITSISLDHQALLGDTVEEIAYQKAGIIK 230
BLAST of jgi.p|Trimin1|148807 vs. uniprot
Match: A0A4D9D7G1_9STRA (ABC transporter domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D7G1_9STRA) HSP 1 Score: 118 bits (295), Expect = 1.700e-28 Identity = 60/127 (47.24%), Postives = 79/127 (62.20%), Query Frame = 1 Query: 1 FTSPHLHTVRERIRLGAELIPRSDLAR----ITASLVPGFQAEP--------WMIFFDRLLAVALTWFQERGAELVILEAGVGGRYDPTNIILPPALCIVTNISLDHEGMLGGTIEASGRAPSAVVR 345 FTSPHLHTVRERIR+ LI R+D R + A+LVP + W FFD++L VAL WF E+ E +ILE G+GGRYDPTN I P +C+VT++S DH MLG +EA + +++ Sbjct: 763 FTSPHLHTVRERIRVNDVLISRADFVRLWHKVHAALVPSGSDDAGPARCGGTWANFFDKVLGVALAWFVEQQVEYIILEVGIGGRYDPTNFIAHPIVCVVTSVSEDHTDMLGQDLEAIAWQKAGIMK 889
BLAST of jgi.p|Trimin1|148807 vs. uniprot
Match: W7TMY0_9STRA (Folylpolyglutamate synthetase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TMY0_9STRA) HSP 1 Score: 117 bits (294), Expect = 2.180e-28 Identity = 62/127 (48.82%), Postives = 80/127 (62.99%), Query Frame = 1 Query: 1 FTSPHLHTVRERIRLGAELIPRSDLAR----ITASLVPGF--QAEP------WMIFFDRLLAVALTWFQERGAELVILEAGVGGRYDPTNIILPPALCIVTNISLDHEGMLGGTIEASGRAPSAVVR 345 FTSPHLHTVRERIR+ LI R+D R + A+LVP A P W FFD++L VAL WF E+ E +ILE G+GGRYDPTN I P +C+VT++S DH MLG +EA + +++ Sbjct: 179 FTSPHLHTVRERIRVNDVLISRADFVRLWHKVHAALVPSGIDDAGPVRCEGTWANFFDKVLGVALAWFVEQQVEYIILEVGIGGRYDPTNFIAHPIVCVVTSVSEDHTDMLGQDLEAIAWQKAGIMK 305
BLAST of jgi.p|Trimin1|148807 vs. uniprot
Match: A0A7S2RCR3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RCR3_9STRA) HSP 1 Score: 116 bits (290), Expect = 2.830e-28 Identity = 51/104 (49.04%), Postives = 69/104 (66.35%), Query Frame = 1 Query: 1 FTSPHLHTVRERIRLGAELIPRSDLARITASLVPGFQAEPWMIFFDRLLAVALTWFQERGAELVILEAGVGGRYDPTNIILPPALCIVTNISLDHEGMLGGTIE 312 FTSPH+H RERI++G E I +D + + P +E WM+ FDR LAVAL F RG ++V+LE G+GGR+D TN + P +C++T IS DH GMLG +E Sbjct: 109 FTSPHVHVFRERIQVGRERITETDFLEVWDACAPALASEAWMVPFDRYLAVALVHFARRGVQVVVLETGIGGRFDSTNFVSQPEVCVLTRISHDHVGMLGNRLE 212
BLAST of jgi.p|Trimin1|148807 vs. uniprot
Match: A0A524AT95_9CHLR (Bifunctional folylpolyglutamate synthase/dihydrofolate synthase n=1 Tax=Anaerolineales bacterium TaxID=2073117 RepID=A0A524AT95_9CHLR) HSP 1 Score: 109 bits (272), Expect = 1.170e-25 Identity = 49/115 (42.61%), Postives = 79/115 (68.70%), Query Frame = 1 Query: 1 FTSPHLHTVRERIRLGAELIPRSDLARITASLVPGFQAEPWMIFFDRLLAVALTWFQERGAELVILEAGVGGRYDPTNIILPPALCIVTNISLDHEGMLGGTIEASGRAPSAVVR 345 ++SPHLHT RERIR+GAELIP D+AR+ ++P ++ P + F+ + A+A+ ++ +R + + E G+GGR D TN+ L P + ++T+ISLDH +LG TIEA R + +++ Sbjct: 116 YSSPHLHTFRERIRIGAELIPEEDVARMIEGMLPILESRPDVTVFEIITALAMRYYADRQVDFGVFEVGMGGRLDATNV-LRPVVSVITSISLDHISVLGDTIEAIAREKAGIIK 229
BLAST of jgi.p|Trimin1|148807 vs. uniprot
Match: A0A3M1G997_9CHLR (Bifunctional folylpolyglutamate synthase/dihydrofolate synthase (Fragment) n=1 Tax=Caldilineae bacterium TaxID=2420332 RepID=A0A3M1G997_9CHLR) HSP 1 Score: 104 bits (260), Expect = 7.100e-25 Identity = 51/115 (44.35%), Postives = 73/115 (63.48%), Query Frame = 1 Query: 1 FTSPHLHTVRERIRLGAELIPRSDLARITASLVPGFQAEPWMIFFDRLLAVALTWFQERGAELVILEAGVGGRYDPTNIILPPALCIVTNISLDHEGMLGGTIEASGRAPSAVVR 345 FTSPHLHT RERIR+ +LI R LA + L P F+A P + FD++ A+A F + G E ++E G+GGR D TN+ L PA+C +T IS+DH +LG T+E + +++ Sbjct: 81 FTSPHLHTFRERIRVDGKLIDRDVLAALVDRLRPDFEALPELTVFDKITALAFQHFADVGVEWAVVEVGLGGRLDSTNV-LAPAVCGITRISMDHTHVLGDTLEKIAAEKAGIIK 194
BLAST of jgi.p|Trimin1|148807 vs. uniprot
Match: A0A3L7X6K3_9CHLR (Bifunctional folylpolyglutamate synthase/dihydrofolate synthase (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3L7X6K3_9CHLR) HSP 1 Score: 104 bits (259), Expect = 5.140e-24 Identity = 50/115 (43.48%), Postives = 73/115 (63.48%), Query Frame = 1 Query: 1 FTSPHLHTVRERIRLGAELIPRSDLARITASLVPGFQAEPWMIFFDRLLAVALTWFQERGAELVILEAGVGGRYDPTNIILPPALCIVTNISLDHEGMLGGTIEASGRAPSAVVR 345 FTSPHLHT RERIR+ ELI R +LA + + + +A + FDR+ A+A F + G E ++E G+GGR D TN++LP +C +T IS+DH +LG TIE R + +++ Sbjct: 56 FTSPHLHTFRERIRVNGELISRDELAGLVSRVREKMEAVEDLGVFDRITALAFQHFADSGVEFAVVEVGLGGRLDSTNVLLP-VVCAITRISMDHMHVLGDTIEKIAREKAGIIK 169
BLAST of jgi.p|Trimin1|148807 vs. uniprot
Match: A0A7S3NJD0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJD0_9STRA) HSP 1 Score: 104 bits (259), Expect = 6.650e-24 Identity = 52/123 (42.28%), Postives = 78/123 (63.41%), Query Frame = 1 Query: 1 FTSPHLHTVRERIRLGAELIPRSDLARITASLVPGFQ-----AEPWMIFFDRLLAVALTWFQERGAELVILEAGVGGRYDPTNIILPP---ALCIVTNISLDHEGMLGGTIEASGRAPSAVVR 345 FTSPHLH+ RERIR+G++LI +DL + ++ + Q +E +FFDRLLA AL +F E+V++E G+GG+YD TN I P A+ ++T++SLDH MLG T+ + ++R Sbjct: 85 FTSPHLHSCRERIRIGSQLISANDLTEVGSAALQLIQNAEDKSEWGAVFFDRLLAAALIYFSTERCEIVVMETGIGGKYDSTNFIQDPQQLAVAVITSLSLDHTAMLGPTLSEIAVHKAGIMR 207
BLAST of jgi.p|Trimin1|148807 vs. uniprot
Match: A0A7C3R7A2_9CHLR (Bifunctional folylpolyglutamate synthase/dihydrofolate synthase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C3R7A2_9CHLR) HSP 1 Score: 103 bits (258), Expect = 8.880e-24 Identity = 47/115 (40.87%), Postives = 75/115 (65.22%), Query Frame = 1 Query: 1 FTSPHLHTVRERIRLGAELIPRSDLARITASLVPGFQAEPWMIFFDRLLAVALTWFQERGAELVILEAGVGGRYDPTNIILPPALCIVTNISLDHEGMLGGTIEASGRAPSAVVR 345 +TSPHLHT RERIR+ ELIP ++R+ S++P P + F+ + A+ + +F ER ++ + E G+GGR D TN+ L P + ++T+ISLDH +LG T+EA R + +++ Sbjct: 81 YTSPHLHTFRERIRVAGELIPEEAVSRLVESMIPVLAVRPDVTVFEIITALGMCYFAERQIDIGVFEVGMGGRLDATNV-LHPMVSVITSISLDHVKVLGDTLEAIAREKAGIIK 194 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|148807 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_4039 ID=mRNA_4039|Name=jgi.p|Trimin1|148807|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=348bp|location=Sequence derived from alignment at Contig_20:45225..46899- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TTCACCAGTCCCCACCTGCACACTGTAAGAGAGAGGATCAGGCTGGGAGCback to top protein sequence of jgi.p|Trimin1|148807 >Trimin1|148807|gw1.20.185.1 ID=Trimin1|148807|gw1.20.185.1|Name=jgi.p|Trimin1|148807|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=116bp FTSPHLHTVRERIRLGAELIPRSDLARITASLVPGFQAEPWMIFFDRLLAback to top mRNA from alignment at Contig_20:45225..46899- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_4039 ID=mRNA_4039|Name=jgi.p|Trimin1|148807|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1675bp|location=Sequence derived from alignment at Contig_20:45225..46899- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_20:45225..46899- >mRNA_4039 ID=mRNA_4039|Name=jgi.p|Trimin1|148807|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=348bp|location=Sequence derived from alignment at Contig_20:45225..46899- (Tribonema minus UTEX_B_3156 )back to top |