mRNA_4039 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|148807
Unique NamemRNA_4039
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|148807 vs. uniprot
Match: A0A835Z390_9STRA (Mur ligase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z390_9STRA)

HSP 1 Score: 236 bits (601), Expect = 9.970e-79
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1
Query:    1 FTSPHLHTVRERIRLGAELIPRSDLARITASLVPGFQAEPWMIFFDRLLAVALTWFQERGAELVILEAGVGGRYDPTNIILPPALCIVTNISLDHEGMLGGTIEASGRAPSAVVRR 348
            FTSPHLHTVRERIRLGAELIPRSDLARITASLVPGFQAEPWMIFFDRLLAVALTWFQERGAELVILEAGVGGRYDPTNIILPPALCIVTNISLDHEGMLGGTIEASGRAPSAVVRR
Sbjct:    1 FTSPHLHTVRERIRLGAELIPRSDLARITASLVPGFQAEPWMIFFDRLLAVALTWFQERGAELVILEAGVGGRYDPTNIILPPALCIVTNISLDHEGMLGGTIEASGRAPSAVVRR 116          
BLAST of jgi.p|Trimin1|148807 vs. uniprot
Match: A0A7S3HLR6_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HLR6_9STRA)

HSP 1 Score: 125 bits (315), Expect = 9.750e-32
Identity = 51/115 (44.35%), Postives = 81/115 (70.43%), Query Frame = 1
Query:    1 FTSPHLHTVRERIRLGAELIPRSDLARITASLVPGFQAEPWMIFFDRLLAVALTWFQERGAELVILEAGVGGRYDPTNIILPPALCIVTNISLDHEGMLGGTIEASGRAPSAVVR 345
            FTSPH+HT RER+++  ELI  SD+ R+   ++     +PW++FFD LLA+A+ +F E+  + +ILE+G+GGRYD TN +  PA C++T+ISLDH+ +LG T+E      + +++
Sbjct:  116 FTSPHMHTARERVKVNRELIAHSDMIRLGNEVLAELSPQPWVVFFDLLLALAVRYFNEKNVQYMILESGIGGRYDTTNFVDNPAACVITSISLDHQALLGDTVEEIAYQKAGIIK 230          
BLAST of jgi.p|Trimin1|148807 vs. uniprot
Match: A0A4D9D7G1_9STRA (ABC transporter domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D7G1_9STRA)

HSP 1 Score: 118 bits (295), Expect = 1.700e-28
Identity = 60/127 (47.24%), Postives = 79/127 (62.20%), Query Frame = 1
Query:    1 FTSPHLHTVRERIRLGAELIPRSDLAR----ITASLVPGFQAEP--------WMIFFDRLLAVALTWFQERGAELVILEAGVGGRYDPTNIILPPALCIVTNISLDHEGMLGGTIEASGRAPSAVVR 345
            FTSPHLHTVRERIR+   LI R+D  R    + A+LVP    +         W  FFD++L VAL WF E+  E +ILE G+GGRYDPTN I  P +C+VT++S DH  MLG  +EA     + +++
Sbjct:  763 FTSPHLHTVRERIRVNDVLISRADFVRLWHKVHAALVPSGSDDAGPARCGGTWANFFDKVLGVALAWFVEQQVEYIILEVGIGGRYDPTNFIAHPIVCVVTSVSEDHTDMLGQDLEAIAWQKAGIMK 889          
BLAST of jgi.p|Trimin1|148807 vs. uniprot
Match: W7TMY0_9STRA (Folylpolyglutamate synthetase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TMY0_9STRA)

HSP 1 Score: 117 bits (294), Expect = 2.180e-28
Identity = 62/127 (48.82%), Postives = 80/127 (62.99%), Query Frame = 1
Query:    1 FTSPHLHTVRERIRLGAELIPRSDLAR----ITASLVPGF--QAEP------WMIFFDRLLAVALTWFQERGAELVILEAGVGGRYDPTNIILPPALCIVTNISLDHEGMLGGTIEASGRAPSAVVR 345
            FTSPHLHTVRERIR+   LI R+D  R    + A+LVP     A P      W  FFD++L VAL WF E+  E +ILE G+GGRYDPTN I  P +C+VT++S DH  MLG  +EA     + +++
Sbjct:  179 FTSPHLHTVRERIRVNDVLISRADFVRLWHKVHAALVPSGIDDAGPVRCEGTWANFFDKVLGVALAWFVEQQVEYIILEVGIGGRYDPTNFIAHPIVCVVTSVSEDHTDMLGQDLEAIAWQKAGIMK 305          
BLAST of jgi.p|Trimin1|148807 vs. uniprot
Match: A0A7S2RCR3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RCR3_9STRA)

HSP 1 Score: 116 bits (290), Expect = 2.830e-28
Identity = 51/104 (49.04%), Postives = 69/104 (66.35%), Query Frame = 1
Query:    1 FTSPHLHTVRERIRLGAELIPRSDLARITASLVPGFQAEPWMIFFDRLLAVALTWFQERGAELVILEAGVGGRYDPTNIILPPALCIVTNISLDHEGMLGGTIE 312
            FTSPH+H  RERI++G E I  +D   +  +  P   +E WM+ FDR LAVAL  F  RG ++V+LE G+GGR+D TN +  P +C++T IS DH GMLG  +E
Sbjct:  109 FTSPHVHVFRERIQVGRERITETDFLEVWDACAPALASEAWMVPFDRYLAVALVHFARRGVQVVVLETGIGGRFDSTNFVSQPEVCVLTRISHDHVGMLGNRLE 212          
BLAST of jgi.p|Trimin1|148807 vs. uniprot
Match: A0A524AT95_9CHLR (Bifunctional folylpolyglutamate synthase/dihydrofolate synthase n=1 Tax=Anaerolineales bacterium TaxID=2073117 RepID=A0A524AT95_9CHLR)

HSP 1 Score: 109 bits (272), Expect = 1.170e-25
Identity = 49/115 (42.61%), Postives = 79/115 (68.70%), Query Frame = 1
Query:    1 FTSPHLHTVRERIRLGAELIPRSDLARITASLVPGFQAEPWMIFFDRLLAVALTWFQERGAELVILEAGVGGRYDPTNIILPPALCIVTNISLDHEGMLGGTIEASGRAPSAVVR 345
            ++SPHLHT RERIR+GAELIP  D+AR+   ++P  ++ P +  F+ + A+A+ ++ +R  +  + E G+GGR D TN+ L P + ++T+ISLDH  +LG TIEA  R  + +++
Sbjct:  116 YSSPHLHTFRERIRIGAELIPEEDVARMIEGMLPILESRPDVTVFEIITALAMRYYADRQVDFGVFEVGMGGRLDATNV-LRPVVSVITSISLDHISVLGDTIEAIAREKAGIIK 229          
BLAST of jgi.p|Trimin1|148807 vs. uniprot
Match: A0A3M1G997_9CHLR (Bifunctional folylpolyglutamate synthase/dihydrofolate synthase (Fragment) n=1 Tax=Caldilineae bacterium TaxID=2420332 RepID=A0A3M1G997_9CHLR)

HSP 1 Score: 104 bits (260), Expect = 7.100e-25
Identity = 51/115 (44.35%), Postives = 73/115 (63.48%), Query Frame = 1
Query:    1 FTSPHLHTVRERIRLGAELIPRSDLARITASLVPGFQAEPWMIFFDRLLAVALTWFQERGAELVILEAGVGGRYDPTNIILPPALCIVTNISLDHEGMLGGTIEASGRAPSAVVR 345
            FTSPHLHT RERIR+  +LI R  LA +   L P F+A P +  FD++ A+A   F + G E  ++E G+GGR D TN+ L PA+C +T IS+DH  +LG T+E      + +++
Sbjct:   81 FTSPHLHTFRERIRVDGKLIDRDVLAALVDRLRPDFEALPELTVFDKITALAFQHFADVGVEWAVVEVGLGGRLDSTNV-LAPAVCGITRISMDHTHVLGDTLEKIAAEKAGIIK 194          
BLAST of jgi.p|Trimin1|148807 vs. uniprot
Match: A0A3L7X6K3_9CHLR (Bifunctional folylpolyglutamate synthase/dihydrofolate synthase (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3L7X6K3_9CHLR)

HSP 1 Score: 104 bits (259), Expect = 5.140e-24
Identity = 50/115 (43.48%), Postives = 73/115 (63.48%), Query Frame = 1
Query:    1 FTSPHLHTVRERIRLGAELIPRSDLARITASLVPGFQAEPWMIFFDRLLAVALTWFQERGAELVILEAGVGGRYDPTNIILPPALCIVTNISLDHEGMLGGTIEASGRAPSAVVR 345
            FTSPHLHT RERIR+  ELI R +LA + + +    +A   +  FDR+ A+A   F + G E  ++E G+GGR D TN++LP  +C +T IS+DH  +LG TIE   R  + +++
Sbjct:   56 FTSPHLHTFRERIRVNGELISRDELAGLVSRVREKMEAVEDLGVFDRITALAFQHFADSGVEFAVVEVGLGGRLDSTNVLLP-VVCAITRISMDHMHVLGDTIEKIAREKAGIIK 169          
BLAST of jgi.p|Trimin1|148807 vs. uniprot
Match: A0A7S3NJD0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJD0_9STRA)

HSP 1 Score: 104 bits (259), Expect = 6.650e-24
Identity = 52/123 (42.28%), Postives = 78/123 (63.41%), Query Frame = 1
Query:    1 FTSPHLHTVRERIRLGAELIPRSDLARITASLVPGFQ-----AEPWMIFFDRLLAVALTWFQERGAELVILEAGVGGRYDPTNIILPP---ALCIVTNISLDHEGMLGGTIEASGRAPSAVVR 345
            FTSPHLH+ RERIR+G++LI  +DL  + ++ +   Q     +E   +FFDRLLA AL +F     E+V++E G+GG+YD TN I  P   A+ ++T++SLDH  MLG T+       + ++R
Sbjct:   85 FTSPHLHSCRERIRIGSQLISANDLTEVGSAALQLIQNAEDKSEWGAVFFDRLLAAALIYFSTERCEIVVMETGIGGKYDSTNFIQDPQQLAVAVITSLSLDHTAMLGPTLSEIAVHKAGIMR 207          
BLAST of jgi.p|Trimin1|148807 vs. uniprot
Match: A0A7C3R7A2_9CHLR (Bifunctional folylpolyglutamate synthase/dihydrofolate synthase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C3R7A2_9CHLR)

HSP 1 Score: 103 bits (258), Expect = 8.880e-24
Identity = 47/115 (40.87%), Postives = 75/115 (65.22%), Query Frame = 1
Query:    1 FTSPHLHTVRERIRLGAELIPRSDLARITASLVPGFQAEPWMIFFDRLLAVALTWFQERGAELVILEAGVGGRYDPTNIILPPALCIVTNISLDHEGMLGGTIEASGRAPSAVVR 345
            +TSPHLHT RERIR+  ELIP   ++R+  S++P     P +  F+ + A+ + +F ER  ++ + E G+GGR D TN+ L P + ++T+ISLDH  +LG T+EA  R  + +++
Sbjct:   81 YTSPHLHTFRERIRVAGELIPEEAVSRLVESMIPVLAVRPDVTVFEIITALGMCYFAERQIDIGVFEVGMGGRLDATNV-LHPMVSVITSISLDHVKVLGDTLEAIAREKAGIIK 194          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|148807 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z390_9STRA9.970e-79100.00Mur ligase (Fragment) n=1 Tax=Tribonema minus TaxI... [more]
A0A7S3HLR6_9STRA9.750e-3244.35Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A4D9D7G1_9STRA1.700e-2847.24ABC transporter domain-containing protein n=2 Tax=... [more]
W7TMY0_9STRA2.180e-2848.82Folylpolyglutamate synthetase n=1 Tax=Nannochlorop... [more]
A0A7S2RCR3_9STRA2.830e-2849.04Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A524AT95_9CHLR1.170e-2542.61Bifunctional folylpolyglutamate synthase/dihydrofo... [more]
A0A3M1G997_9CHLR7.100e-2544.35Bifunctional folylpolyglutamate synthase/dihydrofo... [more]
A0A3L7X6K3_9CHLR5.140e-2443.48Bifunctional folylpolyglutamate synthase/dihydrofo... [more]
A0A7S3NJD0_9STRA6.650e-2442.28Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7C3R7A2_9CHLR8.880e-2440.87Bifunctional folylpolyglutamate synthase/dihydrofo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_20contigContig_20:45225..46899 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|148807|gw1.20.185.1
BiGG ReactioniAF987.Gmet_2475
BRITEko00000,ko00001,ko00002,ko01000
KEGG rclassRC00064,RC00090,RC00162
KEGG ReactionR00942,R02237,R04241
KEGG ModuleM00126,M00841
KEGG Pathwayko00790,ko01100,map00790,map01100
KEGG koko:K11754
EC6.3.2.12,6.3.2.17
Preferred namefolC
DescriptionMur ligase middle domain
COG categoryH
Max annot lvl28221|Deltaproteobacteria
EggNOG OGsCOG0285@1|root,COG0285@2|Bacteria,1MVCH@1224|Proteobacteria,42N08@68525|delta/epsilon subdivisions,2WIW9@28221|Deltaproteobacteria,2MHTY@213118|Desulfobacterales
Evalue4.68e-24
Seed ortholog177439.DP2878
Hectar predicted targeting categoryother localisation
TranscriptId149129
TrackFilteredModels1
ProteinId148807
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|148807gene_4039Tribonema minus UTEX_B_3156 geneContig_20 45225..46899 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|148807Trimin1|148807|gw1.20.185.1Tribonema minus UTEX_B_3156 polypeptideContig_20 45225..46899 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4039_2exon_4039_2Tribonema minus UTEX_B_3156 exonContig_20 45225..45480 -
exon_4039_1exon_4039_1Tribonema minus UTEX_B_3156 exonContig_20 46808..46899 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4039CDS_4039Tribonema minus UTEX_B_3156 CDSContig_20 46808..46899 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4039 ID=mRNA_4039|Name=jgi.p|Trimin1|148807|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=348bp|location=Sequence derived from alignment at Contig_20:45225..46899- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TTCACCAGTCCCCACCTGCACACTGTAAGAGAGAGGATCAGGCTGGGAGC
GGAGCTGATTCCTCGCAGCGATCTGGCGCGCATTACTGCCAGCCTGGTGC
CCGGATTCCAAGCTGAGCCGTGGATGATCTTCTTCGACAGGCTGCTGGCG
GTGGCGCTCACGTGGTTCCAGGAGCGCGGCGCGGAGCTGGTGATTCTGGA
GGCGGGTGTGGGGGGGCGCTATGATCCCACCAACATCATACTGCCGCCCG
CGCTCTGCATCGTCACCAACATCAGCCTCGATCACGAGGGCATGCTGGGC
GGCACTATAGAGGCAAGTGGCCGCGCGCCGTCTGCAGTCGTGCGCCGC
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protein sequence of jgi.p|Trimin1|148807

>Trimin1|148807|gw1.20.185.1 ID=Trimin1|148807|gw1.20.185.1|Name=jgi.p|Trimin1|148807|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=116bp
FTSPHLHTVRERIRLGAELIPRSDLARITASLVPGFQAEPWMIFFDRLLA
VALTWFQERGAELVILEAGVGGRYDPTNIILPPALCIVTNISLDHEGMLG
GTIEASGRAPSAVVRR
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mRNA from alignment at Contig_20:45225..46899-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4039 ID=mRNA_4039|Name=jgi.p|Trimin1|148807|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1675bp|location=Sequence derived from alignment at Contig_20:45225..46899- (Tribonema minus UTEX_B_3156 )
TTCACCAGTCCCCACCTGCACACTGTAAGAGAGAGGATCAGGCTGGGAGC GGAGCTGATTCCTCGCAGCGATCTGGCGCGCATTACTGCCAGGTGAGACC TCATTGGTCCCTGCCAGCCTGCCACTATTCGGTGCCACACAAAGGTTTAT TCCGAGTTCATCTGTTGCGCACATGCCATATTATGAACTCCACAAGTTCT GTGTGTAATCTCCACATACAGTCTCGCGTAGCTTCCTTCTTGGTGTGTAC AGACATGAATGCATTTCCTTGCTGTCGCGGTTCTACTTCCGTGGACAGTG TGGACATAAAATGTTCTGCTTCCTCGACAACAGGCCTGAGATCCCAAAGA ACGCCGAGAGATTGTGAAACTTTTGTTCTCCCAAACGTCGCCTCACCGAT ATGTCCCCACAGCGTACGCGCTAAGCCCGACAGAATCACTGACGTACCCA TATACCGTAAATGCCCGAGTAAACGCCCCCCCCCGTGTACAAGCCTATCC CCCCTGTAAACGCCCGTGGGCGTGCTTGCCAGGGCAGAGTGGGCAACAAC GCTCCCCCCCCCCCTTGTAAACGCCCCCTAGCAATCATAATGGCTGCAGG TCGGCACGGAGCTTGCAAAAACCTGGGAAACAACGAATTTAGCCGAACTT CAAGCCGAACTTGAACTCAATTATCGCCTCGAGTGCTTCTCTACTGCCGA CGATGGTCACACAGGCAACAATGCTCGCTTGACAAGAGCTGTCGTACCTG CAGCGGCTTCGCCAGCACCGCCATTGCTGTCACCAGAGATGTCCGCTATG GCCAGCCACACATCATGCTCGCACCCTTGTAAACGCCCCCTCCGGGCCCT AGTAAACGCCCCCTCCCCCTTGTAAACGCCCCCGCTGCTAGCTGGCAATG CATTATGGAGCAGCTAAGCCCCCCCCCCCTTGTACAGGCCCCTCCCCCCT GTAAACGCCCATGGGCGTGCTGTGCAAAGTTCCAGATCCGCTCGCCCGGG GGGGCGTTTACTCGGGCATTTACGGTACCTGGAAGCACAGAGCCATGAGG CATGAGGCAGACCAACCAGATTCGGCCTTCTGCTGCACAGGTGGTCAACA GTGTTATGTTCCATAGATACATGTATATCACAAAGGCTGGCGTAATTGTG TGCTCATGTTCGCGCTTTGCTGGGTACGGCACAGTGGTTTGCAGCCCTGT GAATCACAGTTGCTGCGCCACACAGAGGTGCAGCGTGGCTAAGCCGATGT TCGCTTTTCCGCCAGTTCCTGTAGTGCTTTGCATCGCCAGCACGCCGTGC AGCATGTGCCGGCCACATAAGCAGCGCCATTTTCTCAACACGGAACACCA CAACCTCGTGCAGCACACACCATCCGCACCCCCTGACCCCCCCCCCCCCC CCCCCCCCGCCCCCCCCAGCCTGGTGCCCGGATTCCAAGCTGAGCCGTGG ATGATCTTCTTCGACAGGCTGCTGGCGGTGGCGCTCACGTGGTTCCAGGA GCGCGGCGCGGAGCTGGTGATTCTGGAGGCGGGTGTGGGGGGGCGCTATG ATCCCACCAACATCATACTGCCGCCCGCGCTCTGCATCGTCACCAACATC AGCCTCGATCACGAGGGCATGCTGGGCGGCACTATAGAGGCAAGTGGCCG CGCGCCGTCTGCAGTCGTGCGCCGC
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Coding sequence (CDS) from alignment at Contig_20:45225..46899-

>mRNA_4039 ID=mRNA_4039|Name=jgi.p|Trimin1|148807|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=348bp|location=Sequence derived from alignment at Contig_20:45225..46899- (Tribonema minus UTEX_B_3156 )
TTCACCAGTCCCCACCTGCACACTGTAAGAGAGAGGATCAGGCTGGGAGC
GGAGCTGATTCCTCGCAGCGATCTGGCGCGCATTACTGCCAGCCTGGTGC
CCGGATTCCAAGCTGAGCCGTGGATGATCTTCTTCGACAGGCTGCTGGCG
GTGGCGCTCACGTGGTTCCAGGAGCGCGGCGCGGAGCTGGTGATTCTGGA
GGCGGGTGTGGGGGGGCGCTATGATCCCACCAACATCATACTGCCGCCCG
CGCTCTGCATCGTCACCAACATCAGCCTCGATCACGAGGGCATGCTGGGC
GGCACTATAGAGGCAAGTGGCCGCGCGCCGTCTGCAGTCGTGCGCCGC
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