mRNA_403 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|157554 vs. uniprot
Match: A0A835Z045_9STRA (Flavine reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z045_9STRA) HSP 1 Score: 472 bits (1214), Expect = 5.280e-168 Identity = 243/243 (100.00%), Postives = 243/243 (100.00%), Query Frame = 1 Query: 1 MIAVFGASGLLGSEVTYQALKQGHKVVAFVRDPSKLTVPKGSGGDEAGKPLTGDNLKIVQGSVTNLEDVDKAFADGDVTSVVVSLGGRTSKVGKTMLTDGTTNIINAMKAHNVKRIAVVTSIGVGDSYSQAPFAFRMLMNTVMRVMIADKNNQEALFTSADGIGKDLDYVIVRPGGLTVEKPTGVINVIDGQAGSIARADVADFILGAVLDNAFPYLRKAPCISSVGGTGWTKDRSASARGEM 729 MIAVFGASGLLGSEVTYQALKQGHKVVAFVRDPSKLTVPKGSGGDEAGKPLTGDNLKIVQGSVTNLEDVDKAFADGDVTSVVVSLGGRTSKVGKTMLTDGTTNIINAMKAHNVKRIAVVTSIGVGDSYSQAPFAFRMLMNTVMRVMIADKNNQEALFTSADGIGKDLDYVIVRPGGLTVEKPTGVINVIDGQAGSIARADVADFILGAVLDNAFPYLRKAPCISSVGGTGWTKDRSASARGEM Sbjct: 1 MIAVFGASGLLGSEVTYQALKQGHKVVAFVRDPSKLTVPKGSGGDEAGKPLTGDNLKIVQGSVTNLEDVDKAFADGDVTSVVVSLGGRTSKVGKTMLTDGTTNIINAMKAHNVKRIAVVTSIGVGDSYSQAPFAFRMLMNTVMRVMIADKNNQEALFTSADGIGKDLDYVIVRPGGLTVEKPTGVINVIDGQAGSIARADVADFILGAVLDNAFPYLRKAPCISSVGGTGWTKDRSASARGEM 243
BLAST of jgi.p|Trimin1|157554 vs. uniprot
Match: A0A836C907_9STRA (Flavine reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C907_9STRA) HSP 1 Score: 348 bits (894), Expect = 1.200e-118 Identity = 180/242 (74.38%), Postives = 203/242 (83.88%), Query Frame = 1 Query: 4 IAVFGASGLLGSEVTYQALKQGHKVVAFVRDPSKLTVPKGSGGDEAGKPLTGDNLKIVQGSVTNLEDVDKAFADGDVTSVVVSLGGRTSKVGKTMLTDGTTNIINAMKAHNVKRIAVVTSIGVGDSYSQAPFAFRMLMNTVMRVMIADKNNQEALFTSADGIGKDLDYVIVRPGGLTVEKPTGVINVIDGQAGSIARADVADFILGAVLDNAFPYLRKAPCISSVGGTGWTKDRSASARGEM 729 IAVFGASGLLGSEVTYQAL++G V+AF+RDPSKL VP GSGG +AGKPL D LK+VQGSV + +DV KAFA GDVT VVV+LGG+T VGKTMLTDGT+NII AMKA+ VKRIA VTSIG GDS +QAPF F++LM TVM+ + DKNNQEALFT G G DL++ IVRPGGLTVE PTGVINVI G+AGSI+RADVADF LGAVL+ FPYLRK PCISSVGGT WTKDRSA+ARG M Sbjct: 44 IAVFGASGLLGSEVTYQALQRGEDVIAFLRDPSKLVVPAGSGGPDAGKPLKSDKLKVVQGSVVSYDDVTKAFAGGDVTGVVVALGGKTKDVGKTMLTDGTSNIIKAMKANGVKRIAAVTSIGAGDSENQAPFFFKVLMFTVMKNIFEDKNNQEALFTR--GPGSDLEFTIVRPGGLTVEPPTGVINVISGEAGSISRADVADFCLGAVLEEGFPYLRKTPCISSVGGTSWTKDRSAAARGGM 283
BLAST of jgi.p|Trimin1|157554 vs. uniprot
Match: D7FYW5_ECTSI (Flavine reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYW5_ECTSI) HSP 1 Score: 317 bits (812), Expect = 3.610e-106 Identity = 161/242 (66.53%), Postives = 192/242 (79.34%), Query Frame = 1 Query: 4 IAVFGASGLLGSEVTYQALKQGHKVVAFVRDPSKLTVPKGSGGDEAGKPLTGDNLKIVQGSVTNLEDVDKAFADGDVTSVVVSLGGRTSKVGKTMLTDGTTNIINAMKAHNVKRIAVVTSIGVGDSYSQAPFAFRMLMNTVMRVMIADKNNQEALFTSADGIGKDLDYVIVRPGGLTVEKPTGVINVIDGQAGSIARADVADFILGAVLDNAFPYLRKAPCISSVGGTGWTKDRSASARGEM 729 IAVFG +GL GSEV YQAL++G KV AF RDPSKL P G G +AG PL+ +NLK VQG+VT+L+DV K F++G +T V ++LGG+T VG TMLTDGT+NII AMK VK++A VTSIG GDS +QAPF F++LM T M+ + ADKN QE LF DG G+DLD+ IVRPGGLTVE PTGVINVI G+AGSI+RADVADFILGA+ D FPYL++APCISSVGGT W KDRS +ARGEM Sbjct: 43 IAVFGGNGLTGSEVVYQALQRGDKVTAFCRDPSKLVYPPGVGVTKAGTPLSNENLKTVQGTVTDLDDVRKVFSNGPITGVAIALGGKTKDVGTTMLTDGTSNIITAMKEKGVKKVATVTSIGTGDSENQAPFFFKVLMYTAMKSIFADKNEQEKLFF--DGPGQDLDFTIVRPGGLTVEPPTGVINVIKGEAGSISRADVADFILGAISDKDFPYLKQAPCISSVGGTSWVKDRSGAARGEM 282
BLAST of jgi.p|Trimin1|157554 vs. uniprot
Match: A0A7S4GJG4_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4GJG4_9EUGL) HSP 1 Score: 297 bits (761), Expect = 1.300e-97 Identity = 156/240 (65.00%), Postives = 182/240 (75.83%), Query Frame = 1 Query: 4 IAVFGASGLLGSEVTYQALKQGHKVVAFVRDPSKLTVPKGSGGDEAGKPLTGDNLKIVQGSVTNLEDVDKAFADGDVTSVVVSLGGRTSKVGKTMLTDGTTNIINAMKAHNVKRIAVVTSIGVGDSYSQAPFAFRMLMNTVMRVMIADKNNQEALFTSADGIGKDLDYVIVRPGGLTVEKPTGVINVIDGQAGSIARADVADFILGAVLDNAFPYLRKAPCISSVGGTGWTKDRSASARG 723 I V GA+GL G+E +Q L +G+KVV R+PSKL VP GSGG + G+PL L ++QGSVTN DV +AF D+ VVV+LGG+TS+VGKTMLTDGT+NII AMKA +KRIAVVTSIG GDS QAPF FR+LM TVMR + DKNNQEALF G G DL+Y IVRPGGLTV PTG INVIDG+AGSIARADVA F L A+LD + Y+ K PCISS+ GT WTKDRSA+ARG Sbjct: 103 IVVIGATGLTGAEAVFQGLARGYKVVGLARNPSKLVVPAGSGGADGGQPLADGALTMIQGSVTNKADVMRAFEADDIAGVVVALGGKTSEVGKTMLTDGTSNIIEAMKAKGLKRIAVVTSIGAGDSEKQAPFFFRVLMGTVMRGVFEDKNNQEALFLQ--GPGADLEYTIVRPGGLTVNPPTGQINVIDGEAGSIARADVASFCLDAILDPEWKYIGKTPCISSLEGTSWTKDRSAAARG 340
BLAST of jgi.p|Trimin1|157554 vs. uniprot
Match: A0A7S4A4Y4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A4Y4_9STRA) HSP 1 Score: 293 bits (750), Expect = 4.820e-97 Identity = 153/242 (63.22%), Postives = 183/242 (75.62%), Query Frame = 1 Query: 4 IAVFGASGLLGSEVTYQALKQGHKVVAFVRDPSKLTVPKGSGGDEAGKPLTGDNLKIVQGSVTNLEDVDKAFADGDVTSVVVSLGGRTSKVGKTMLTDGTTNIINAMKAHNVKRIAVVTSIGVGDSYSQAPFAFRMLMNTVMRVMIADKNNQEALFTSADGIGKDLDYVIVRPGGLTVEKPTGVINVIDGQAGSIARADVADFILGAVLDNAFPYLRKAPCISSVGGTGWTKDRSASARGEM 729 +AVFGA+GL G E T+Q L++G V A RDP+KL P GS G E + D L +GSVTN DV+K F GDV V++SLGG+T VG TMLTDGT +I AMK ++VKR+AVVTSIG GDS QAPF F+MLM TVM + DKNNQEALFT G+G+DL++ IVRPGGLTVEKPTGVINVI+G+AGSIARADVADF +GA+L+ FPY++K PCISSVGGT W KDRSA+AR M Sbjct: 24 VAVFGATGLTGRECTHQLLERGVPVRALCRDPAKLLTPLGSTGKE--DLVENDQLYKYKGSVTNAADVEKVFEGGDVEGVIISLGGKTKDVGPTMLTDGTATVIAAMKKYDVKRVAVVTSIGAGDSKDQAPFMFKMLMMTVMSSIFTDKNNQEALFTDG-GVGRDLEWCIVRPGGLTVEKPTGVINVIEGEAGSIARADVADFCIGAILEKDFPYIQKTPCISSVGGTSWVKDRSAAAREGM 262
BLAST of jgi.p|Trimin1|157554 vs. uniprot
Match: A0A7S2UG26_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UG26_9STRA) HSP 1 Score: 293 bits (749), Expect = 9.550e-97 Identity = 151/241 (62.66%), Postives = 180/241 (74.69%), Query Frame = 1 Query: 4 IAVFGASGLLGSEVTYQALKQGHKVVAFVRDPSKLTVPKGSGGDEAGKPLTGDNLKIVQGSVTNLEDVDKAFADGDVTSVVVSLGGRTSKVGKTMLTDGTTNIINAMKAHNVKRIAVVTSIGVGDSYSQAPFAFRMLMNTVMRVMIADKNNQEALFTSADGIGKDLDYVIVRPGGLTVEKPTGVINVIDGQAGSIARADVADFILGAVLDNAFPYLRKAPCISSVGGTGWTKDRSASARGE 726 IAVFGASGL SE YQALK+G KVV R PS L +P+GSGGDEAG PLT NL ++ GSVTN +DV K FA+ D+ V++LGG+TS VG TMLTDGT I++AMK VKR++VVTSIG GDS +QAPF F++LM T M+ + DKNNQE + + L+Y IVRPGGLTV+KPTG+INVIDG+AGSI RADVA F L A+ FPY+ K PCISSVGGTGW KDRS +ARGE Sbjct: 37 IAVFGASGLTASECVYQALKEGDKVVGLTRTPSNLKIPQGSGGDEAGNPLTDPNLTMIAGSVTNPDDVAKVFANDDIDGCVIALGGKTSDVGDTMLTDGTKVILDAMKVKGVKRVSVVTSIGAGDSENQAPFFFKVLMMTAMKKIFTDKNNQEDVVMKSG-----LEYCIVRPGGLTVDKPTGIINVIDGKAGSIPRADVAQFCLDAISVEDFPYIGKTPCISSVGGTGWVKDRSKAARGE 272
BLAST of jgi.p|Trimin1|157554 vs. uniprot
Match: A0A0G4GNW0_9ALVE (NAD(P)-bd_dom domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GNW0_9ALVE) HSP 1 Score: 293 bits (749), Expect = 1.060e-96 Identity = 151/234 (64.53%), Postives = 178/234 (76.07%), Query Frame = 1 Query: 4 IAVFGASGLLGSEVTYQALKQGHKVVAFVRDPSKLTVPKGSGGDEAGKPLTGDNLKIVQGSVTNLEDVDKAFADGDVTSVVVSLGGRTSKVGKTMLTDGTTNIINAMKAHNVKRIAVVTSIGVGDSYSQAPFAFRMLMNTVMRVMIADKNNQEALFTSADGIGKDLDYVIVRPGGLTVEKPTGVINVIDGQAGSIARADVADFILGAVLDNAFPYLRKAPCISSVGGTGWTKDR 705 IA+FGASG G EV Y+AL QG KV AFVRDP+KL +P+GSGGD AG+PL D L + QG VTNL DV K F GDV VV++LGG+T VGK+MLT GT N+I AM+ VKR+AVV+SIG GDS QAP F++LM TVM+ + ADKNNQE LF + G G DL++ +VRPGGL V TGVINVIDG+AGSI RADVADF LGAVL+ F Y+RKAPCISSVGGTGW K + Sbjct: 36 IAIFGASGKTGQEVAYRALDQGCKVAAFVRDPAKLCIPQGSGGDLAGQPLKNDGLAVFQGDVTNLNDVKKVFEKGDVDGVVIALGGKTKDVGKSMLTAGTKNVIEAMREKGVKRVAVVSSIGAGDSEKQAPLFFKVLMYTVMKDIFADKNNQERLFIN--GPGSDLEWCLVRPGGLGVGPATGVINVIDGEAGSIMRADVADFCLGAVLEKDFEYVRKAPCISSVGGTGWVKQK 267
BLAST of jgi.p|Trimin1|157554 vs. uniprot
Match: A0A7S2RKE8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RKE8_9STRA) HSP 1 Score: 293 bits (750), Expect = 1.490e-96 Identity = 149/241 (61.83%), Postives = 186/241 (77.18%), Query Frame = 1 Query: 4 IAVFGASGLLGSEVTYQALKQGHKVVAFVRDPSKLTVPKGSGGDEAGKPLTGDNLKIVQGSVTNLEDVDKAFADGDVTSVVVSLGGRTSKVGKTMLTDGTTNIINAMKAHNVKRIAVVTSIGVGDSYSQAPFAFRMLMNTVMRVMIADKNNQEALFTSADGIGKDLDYVIVRPGGLTVEKPTGVINVIDGQAGSIARADVADFILGAVLDNAFPYLRKAPCISSVGGTGWTKDRSASARGE 726 IAVFGA+G +GSEV YQ L +G V VRD ++L +P+GSGG +AG+P++G + +VQG+VT+ DVD F DVT VVV+LGG+T VG TMLTDGTT I+NA K + VKRIAVVTSIG GDS +QAPF F+MLM TVM+ + DKNNQEALF GIGKDL++ +VRPGGL +E P G++NVIDG+AGSIARADVADF + AV D FPY+ K+PCISS GT WTKDR+A+ +G+ Sbjct: 56 IAVFGATGGVGSEVVYQTLAKGEAVTCLVRDKARLNIPEGSGGAQAGQPISGAH--VVQGTVTSQSDVDSVFEGQDVTGVVVALGGKTKDVGPTMLTDGTTCIVNACKKYGVKRIAVVTSIGAGDSENQAPFFFKMLMWTVMKGIFEDKNNQEALFLGPGGIGKDLEFCVVRPGGLNLEPPNGIVNVIDGEAGSIARADVADFCMKAVSDADFPYIGKSPCISSDKGTSWTKDRTAATQGD 294
BLAST of jgi.p|Trimin1|157554 vs. uniprot
Match: A0A813F7S5_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813F7S5_POLGL) HSP 1 Score: 289 bits (740), Expect = 2.150e-95 Identity = 152/239 (63.60%), Postives = 184/239 (76.99%), Query Frame = 1 Query: 4 IAVFGASGLLGSEVTYQALKQGHKVVAFVRDPSKLTVPKGSGGDEAGKPLTGDNLKIVQGSVTNLEDVDKAFADGDVTSVVVSLGGRTSKVGKTMLTDGTTNIINAMKAHNVKRIAVVTSIGVGDSYSQAPFAFRMLMNTVMRVMIADKNNQEALFTSADGIGKDLDYVIVRPGGLTVEKPTGVINVIDGQAGSIARADVADFILGAVLDNAFPYLRKAPCISSVGGTGWTKDRSASAR 720 IAVFGA+GL G E YQAL++G +V R+PSKL P GS G EA + ++ L ++QG VT LEDV++ G VT VVV+LGG+T+ VG+TMLTDGT+NII AMK + KR+AVVTSIG GDS +QAPF F++LM T+M + DKNNQEALF + GIG +L+Y IVRPGGLTVE PTGVINVIDG+AGSIAR DVADF LGA+L+ F Y+RK PCISSVGGTGW KDRSA +R Sbjct: 35 IAVFGATGLTGREAVYQALQRGLEVRVLARNPSKLLSPLGSAGTEADQLMSDPKLTVIQGDVTKLEDVEEVLKSG-VTGVVVALGGKTADVGETMLTDGTSNIIAAMKRIDAKRVAVVTSIGAGDSENQAPFFFKVLMYTMMNKIFKDKNNQEALFLN--GIGSELEYTIVRPGGLTVEAPTGVINVIDGEAGSIARGDVADFCLGAILEPDFAYIRKTPCISSVGGTGWIKDRSAKSR 270
BLAST of jgi.p|Trimin1|157554 vs. uniprot
Match: K0TNE0_THAOC (NAD(P)-bd_dom domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TNE0_THAOC) HSP 1 Score: 289 bits (740), Expect = 2.300e-95 Identity = 152/242 (62.81%), Postives = 175/242 (72.31%), Query Frame = 1 Query: 4 IAVFGASGLLGSEVTYQALKQGHKVVAFVRDPSKLTVPKGSGGDEAGKPLTGDNLKIVQGSVTNLEDVDKAFADGDVTSVVVSLGGRTSKVGKTMLTDGTTNIINAMKAHNVKRIAVVTSIGVGDSYSQAPFAFRMLMNTVMRVMIADKNNQEALFTSADGIGKDLDYVIVRPGGLTVEKPTGVINVIDGQAGSIARADVADFILGAVLDNAFPYLRKAPCISSVGGTGWTKDRSASARGEM 729 IAVFGASGL SE YQALK G VV R+PS L VPKGSGG +A PL + L ++ G VT + DV+KA + D+ V+V+LGG+TS VG TMLTDGT NII AMK VKR+ VVTSIG GDS QAPFAF++LM TVM+ + DKNNQE + L+Y IVRPGGLTV+ PTGVINVIDG+AGSI RADVA F LGAV D F Y+ KAPCISSVGGT W KDRS +ARGEM Sbjct: 39 IAVFGASGLTASECVYQALKDGDNVVGLTRNPSNLKVPKGSGGADAENPLVDEKLTLIGGDVTKMSDVEKAVFENDIDGVIVALGGKTSDVGDTMLTDGTNNIIAAMKDKGVKRLCVVTSIGAGDSKDQAPFAFKLLMMTVMKKIFTDKNNQEKAVEESG-----LEYCIVRPGGLTVDAPTGVINVIDGEAGSIPRADVAQFCLGAVKDPDFAYINKAPCISSVGGTSWVKDRSKAARGEM 275 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|157554 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_403 ID=mRNA_403|Name=jgi.p|Trimin1|157554|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=732bp|location=Sequence derived from alignment at Contig_3:1284900..1288901- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGATCGCAGTGTTTGGAGCTAGTGGACTTTTGGGCTCGGAGGTCACATAback to top protein sequence of jgi.p|Trimin1|157554 >Trimin1|157554|e_gw1.3.131.1 ID=Trimin1|157554|e_gw1.3.131.1|Name=jgi.p|Trimin1|157554|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=244bp MIAVFGASGLLGSEVTYQALKQGHKVVAFVRDPSKLTVPKGSGGDEAGKPback to top mRNA from alignment at Contig_3:1284900..1288901- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_403 ID=mRNA_403|Name=jgi.p|Trimin1|157554|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4002bp|location=Sequence derived from alignment at Contig_3:1284900..1288901- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_3:1284900..1288901- >mRNA_403 ID=mRNA_403|Name=jgi.p|Trimin1|157554|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=732bp|location=Sequence derived from alignment at Contig_3:1284900..1288901- (Tribonema minus UTEX_B_3156 )back to top |