mRNA_403 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|157554
Unique NamemRNA_403
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|157554 vs. uniprot
Match: A0A835Z045_9STRA (Flavine reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z045_9STRA)

HSP 1 Score: 472 bits (1214), Expect = 5.280e-168
Identity = 243/243 (100.00%), Postives = 243/243 (100.00%), Query Frame = 1
Query:    1 MIAVFGASGLLGSEVTYQALKQGHKVVAFVRDPSKLTVPKGSGGDEAGKPLTGDNLKIVQGSVTNLEDVDKAFADGDVTSVVVSLGGRTSKVGKTMLTDGTTNIINAMKAHNVKRIAVVTSIGVGDSYSQAPFAFRMLMNTVMRVMIADKNNQEALFTSADGIGKDLDYVIVRPGGLTVEKPTGVINVIDGQAGSIARADVADFILGAVLDNAFPYLRKAPCISSVGGTGWTKDRSASARGEM 729
            MIAVFGASGLLGSEVTYQALKQGHKVVAFVRDPSKLTVPKGSGGDEAGKPLTGDNLKIVQGSVTNLEDVDKAFADGDVTSVVVSLGGRTSKVGKTMLTDGTTNIINAMKAHNVKRIAVVTSIGVGDSYSQAPFAFRMLMNTVMRVMIADKNNQEALFTSADGIGKDLDYVIVRPGGLTVEKPTGVINVIDGQAGSIARADVADFILGAVLDNAFPYLRKAPCISSVGGTGWTKDRSASARGEM
Sbjct:    1 MIAVFGASGLLGSEVTYQALKQGHKVVAFVRDPSKLTVPKGSGGDEAGKPLTGDNLKIVQGSVTNLEDVDKAFADGDVTSVVVSLGGRTSKVGKTMLTDGTTNIINAMKAHNVKRIAVVTSIGVGDSYSQAPFAFRMLMNTVMRVMIADKNNQEALFTSADGIGKDLDYVIVRPGGLTVEKPTGVINVIDGQAGSIARADVADFILGAVLDNAFPYLRKAPCISSVGGTGWTKDRSASARGEM 243          
BLAST of jgi.p|Trimin1|157554 vs. uniprot
Match: A0A836C907_9STRA (Flavine reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C907_9STRA)

HSP 1 Score: 348 bits (894), Expect = 1.200e-118
Identity = 180/242 (74.38%), Postives = 203/242 (83.88%), Query Frame = 1
Query:    4 IAVFGASGLLGSEVTYQALKQGHKVVAFVRDPSKLTVPKGSGGDEAGKPLTGDNLKIVQGSVTNLEDVDKAFADGDVTSVVVSLGGRTSKVGKTMLTDGTTNIINAMKAHNVKRIAVVTSIGVGDSYSQAPFAFRMLMNTVMRVMIADKNNQEALFTSADGIGKDLDYVIVRPGGLTVEKPTGVINVIDGQAGSIARADVADFILGAVLDNAFPYLRKAPCISSVGGTGWTKDRSASARGEM 729
            IAVFGASGLLGSEVTYQAL++G  V+AF+RDPSKL VP GSGG +AGKPL  D LK+VQGSV + +DV KAFA GDVT VVV+LGG+T  VGKTMLTDGT+NII AMKA+ VKRIA VTSIG GDS +QAPF F++LM TVM+ +  DKNNQEALFT   G G DL++ IVRPGGLTVE PTGVINVI G+AGSI+RADVADF LGAVL+  FPYLRK PCISSVGGT WTKDRSA+ARG M
Sbjct:   44 IAVFGASGLLGSEVTYQALQRGEDVIAFLRDPSKLVVPAGSGGPDAGKPLKSDKLKVVQGSVVSYDDVTKAFAGGDVTGVVVALGGKTKDVGKTMLTDGTSNIIKAMKANGVKRIAAVTSIGAGDSENQAPFFFKVLMFTVMKNIFEDKNNQEALFTR--GPGSDLEFTIVRPGGLTVEPPTGVINVISGEAGSISRADVADFCLGAVLEEGFPYLRKTPCISSVGGTSWTKDRSAAARGGM 283          
BLAST of jgi.p|Trimin1|157554 vs. uniprot
Match: D7FYW5_ECTSI (Flavine reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYW5_ECTSI)

HSP 1 Score: 317 bits (812), Expect = 3.610e-106
Identity = 161/242 (66.53%), Postives = 192/242 (79.34%), Query Frame = 1
Query:    4 IAVFGASGLLGSEVTYQALKQGHKVVAFVRDPSKLTVPKGSGGDEAGKPLTGDNLKIVQGSVTNLEDVDKAFADGDVTSVVVSLGGRTSKVGKTMLTDGTTNIINAMKAHNVKRIAVVTSIGVGDSYSQAPFAFRMLMNTVMRVMIADKNNQEALFTSADGIGKDLDYVIVRPGGLTVEKPTGVINVIDGQAGSIARADVADFILGAVLDNAFPYLRKAPCISSVGGTGWTKDRSASARGEM 729
            IAVFG +GL GSEV YQAL++G KV AF RDPSKL  P G G  +AG PL+ +NLK VQG+VT+L+DV K F++G +T V ++LGG+T  VG TMLTDGT+NII AMK   VK++A VTSIG GDS +QAPF F++LM T M+ + ADKN QE LF   DG G+DLD+ IVRPGGLTVE PTGVINVI G+AGSI+RADVADFILGA+ D  FPYL++APCISSVGGT W KDRS +ARGEM
Sbjct:   43 IAVFGGNGLTGSEVVYQALQRGDKVTAFCRDPSKLVYPPGVGVTKAGTPLSNENLKTVQGTVTDLDDVRKVFSNGPITGVAIALGGKTKDVGTTMLTDGTSNIITAMKEKGVKKVATVTSIGTGDSENQAPFFFKVLMYTAMKSIFADKNEQEKLFF--DGPGQDLDFTIVRPGGLTVEPPTGVINVIKGEAGSISRADVADFILGAISDKDFPYLKQAPCISSVGGTSWVKDRSGAARGEM 282          
BLAST of jgi.p|Trimin1|157554 vs. uniprot
Match: A0A7S4GJG4_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4GJG4_9EUGL)

HSP 1 Score: 297 bits (761), Expect = 1.300e-97
Identity = 156/240 (65.00%), Postives = 182/240 (75.83%), Query Frame = 1
Query:    4 IAVFGASGLLGSEVTYQALKQGHKVVAFVRDPSKLTVPKGSGGDEAGKPLTGDNLKIVQGSVTNLEDVDKAFADGDVTSVVVSLGGRTSKVGKTMLTDGTTNIINAMKAHNVKRIAVVTSIGVGDSYSQAPFAFRMLMNTVMRVMIADKNNQEALFTSADGIGKDLDYVIVRPGGLTVEKPTGVINVIDGQAGSIARADVADFILGAVLDNAFPYLRKAPCISSVGGTGWTKDRSASARG 723
            I V GA+GL G+E  +Q L +G+KVV   R+PSKL VP GSGG + G+PL    L ++QGSVTN  DV +AF   D+  VVV+LGG+TS+VGKTMLTDGT+NII AMKA  +KRIAVVTSIG GDS  QAPF FR+LM TVMR +  DKNNQEALF    G G DL+Y IVRPGGLTV  PTG INVIDG+AGSIARADVA F L A+LD  + Y+ K PCISS+ GT WTKDRSA+ARG
Sbjct:  103 IVVIGATGLTGAEAVFQGLARGYKVVGLARNPSKLVVPAGSGGADGGQPLADGALTMIQGSVTNKADVMRAFEADDIAGVVVALGGKTSEVGKTMLTDGTSNIIEAMKAKGLKRIAVVTSIGAGDSEKQAPFFFRVLMGTVMRGVFEDKNNQEALFLQ--GPGADLEYTIVRPGGLTVNPPTGQINVIDGEAGSIARADVASFCLDAILDPEWKYIGKTPCISSLEGTSWTKDRSAAARG 340          
BLAST of jgi.p|Trimin1|157554 vs. uniprot
Match: A0A7S4A4Y4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A4Y4_9STRA)

HSP 1 Score: 293 bits (750), Expect = 4.820e-97
Identity = 153/242 (63.22%), Postives = 183/242 (75.62%), Query Frame = 1
Query:    4 IAVFGASGLLGSEVTYQALKQGHKVVAFVRDPSKLTVPKGSGGDEAGKPLTGDNLKIVQGSVTNLEDVDKAFADGDVTSVVVSLGGRTSKVGKTMLTDGTTNIINAMKAHNVKRIAVVTSIGVGDSYSQAPFAFRMLMNTVMRVMIADKNNQEALFTSADGIGKDLDYVIVRPGGLTVEKPTGVINVIDGQAGSIARADVADFILGAVLDNAFPYLRKAPCISSVGGTGWTKDRSASARGEM 729
            +AVFGA+GL G E T+Q L++G  V A  RDP+KL  P GS G E    +  D L   +GSVTN  DV+K F  GDV  V++SLGG+T  VG TMLTDGT  +I AMK ++VKR+AVVTSIG GDS  QAPF F+MLM TVM  +  DKNNQEALFT   G+G+DL++ IVRPGGLTVEKPTGVINVI+G+AGSIARADVADF +GA+L+  FPY++K PCISSVGGT W KDRSA+AR  M
Sbjct:   24 VAVFGATGLTGRECTHQLLERGVPVRALCRDPAKLLTPLGSTGKE--DLVENDQLYKYKGSVTNAADVEKVFEGGDVEGVIISLGGKTKDVGPTMLTDGTATVIAAMKKYDVKRVAVVTSIGAGDSKDQAPFMFKMLMMTVMSSIFTDKNNQEALFTDG-GVGRDLEWCIVRPGGLTVEKPTGVINVIEGEAGSIARADVADFCIGAILEKDFPYIQKTPCISSVGGTSWVKDRSAAAREGM 262          
BLAST of jgi.p|Trimin1|157554 vs. uniprot
Match: A0A7S2UG26_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UG26_9STRA)

HSP 1 Score: 293 bits (749), Expect = 9.550e-97
Identity = 151/241 (62.66%), Postives = 180/241 (74.69%), Query Frame = 1
Query:    4 IAVFGASGLLGSEVTYQALKQGHKVVAFVRDPSKLTVPKGSGGDEAGKPLTGDNLKIVQGSVTNLEDVDKAFADGDVTSVVVSLGGRTSKVGKTMLTDGTTNIINAMKAHNVKRIAVVTSIGVGDSYSQAPFAFRMLMNTVMRVMIADKNNQEALFTSADGIGKDLDYVIVRPGGLTVEKPTGVINVIDGQAGSIARADVADFILGAVLDNAFPYLRKAPCISSVGGTGWTKDRSASARGE 726
            IAVFGASGL  SE  YQALK+G KVV   R PS L +P+GSGGDEAG PLT  NL ++ GSVTN +DV K FA+ D+   V++LGG+TS VG TMLTDGT  I++AMK   VKR++VVTSIG GDS +QAPF F++LM T M+ +  DKNNQE +   +      L+Y IVRPGGLTV+KPTG+INVIDG+AGSI RADVA F L A+    FPY+ K PCISSVGGTGW KDRS +ARGE
Sbjct:   37 IAVFGASGLTASECVYQALKEGDKVVGLTRTPSNLKIPQGSGGDEAGNPLTDPNLTMIAGSVTNPDDVAKVFANDDIDGCVIALGGKTSDVGDTMLTDGTKVILDAMKVKGVKRVSVVTSIGAGDSENQAPFFFKVLMMTAMKKIFTDKNNQEDVVMKSG-----LEYCIVRPGGLTVDKPTGIINVIDGKAGSIPRADVAQFCLDAISVEDFPYIGKTPCISSVGGTGWVKDRSKAARGE 272          
BLAST of jgi.p|Trimin1|157554 vs. uniprot
Match: A0A0G4GNW0_9ALVE (NAD(P)-bd_dom domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GNW0_9ALVE)

HSP 1 Score: 293 bits (749), Expect = 1.060e-96
Identity = 151/234 (64.53%), Postives = 178/234 (76.07%), Query Frame = 1
Query:    4 IAVFGASGLLGSEVTYQALKQGHKVVAFVRDPSKLTVPKGSGGDEAGKPLTGDNLKIVQGSVTNLEDVDKAFADGDVTSVVVSLGGRTSKVGKTMLTDGTTNIINAMKAHNVKRIAVVTSIGVGDSYSQAPFAFRMLMNTVMRVMIADKNNQEALFTSADGIGKDLDYVIVRPGGLTVEKPTGVINVIDGQAGSIARADVADFILGAVLDNAFPYLRKAPCISSVGGTGWTKDR 705
            IA+FGASG  G EV Y+AL QG KV AFVRDP+KL +P+GSGGD AG+PL  D L + QG VTNL DV K F  GDV  VV++LGG+T  VGK+MLT GT N+I AM+   VKR+AVV+SIG GDS  QAP  F++LM TVM+ + ADKNNQE LF +  G G DL++ +VRPGGL V   TGVINVIDG+AGSI RADVADF LGAVL+  F Y+RKAPCISSVGGTGW K +
Sbjct:   36 IAIFGASGKTGQEVAYRALDQGCKVAAFVRDPAKLCIPQGSGGDLAGQPLKNDGLAVFQGDVTNLNDVKKVFEKGDVDGVVIALGGKTKDVGKSMLTAGTKNVIEAMREKGVKRVAVVSSIGAGDSEKQAPLFFKVLMYTVMKDIFADKNNQERLFIN--GPGSDLEWCLVRPGGLGVGPATGVINVIDGEAGSIMRADVADFCLGAVLEKDFEYVRKAPCISSVGGTGWVKQK 267          
BLAST of jgi.p|Trimin1|157554 vs. uniprot
Match: A0A7S2RKE8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RKE8_9STRA)

HSP 1 Score: 293 bits (750), Expect = 1.490e-96
Identity = 149/241 (61.83%), Postives = 186/241 (77.18%), Query Frame = 1
Query:    4 IAVFGASGLLGSEVTYQALKQGHKVVAFVRDPSKLTVPKGSGGDEAGKPLTGDNLKIVQGSVTNLEDVDKAFADGDVTSVVVSLGGRTSKVGKTMLTDGTTNIINAMKAHNVKRIAVVTSIGVGDSYSQAPFAFRMLMNTVMRVMIADKNNQEALFTSADGIGKDLDYVIVRPGGLTVEKPTGVINVIDGQAGSIARADVADFILGAVLDNAFPYLRKAPCISSVGGTGWTKDRSASARGE 726
            IAVFGA+G +GSEV YQ L +G  V   VRD ++L +P+GSGG +AG+P++G +  +VQG+VT+  DVD  F   DVT VVV+LGG+T  VG TMLTDGTT I+NA K + VKRIAVVTSIG GDS +QAPF F+MLM TVM+ +  DKNNQEALF    GIGKDL++ +VRPGGL +E P G++NVIDG+AGSIARADVADF + AV D  FPY+ K+PCISS  GT WTKDR+A+ +G+
Sbjct:   56 IAVFGATGGVGSEVVYQTLAKGEAVTCLVRDKARLNIPEGSGGAQAGQPISGAH--VVQGTVTSQSDVDSVFEGQDVTGVVVALGGKTKDVGPTMLTDGTTCIVNACKKYGVKRIAVVTSIGAGDSENQAPFFFKMLMWTVMKGIFEDKNNQEALFLGPGGIGKDLEFCVVRPGGLNLEPPNGIVNVIDGEAGSIARADVADFCMKAVSDADFPYIGKSPCISSDKGTSWTKDRTAATQGD 294          
BLAST of jgi.p|Trimin1|157554 vs. uniprot
Match: A0A813F7S5_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813F7S5_POLGL)

HSP 1 Score: 289 bits (740), Expect = 2.150e-95
Identity = 152/239 (63.60%), Postives = 184/239 (76.99%), Query Frame = 1
Query:    4 IAVFGASGLLGSEVTYQALKQGHKVVAFVRDPSKLTVPKGSGGDEAGKPLTGDNLKIVQGSVTNLEDVDKAFADGDVTSVVVSLGGRTSKVGKTMLTDGTTNIINAMKAHNVKRIAVVTSIGVGDSYSQAPFAFRMLMNTVMRVMIADKNNQEALFTSADGIGKDLDYVIVRPGGLTVEKPTGVINVIDGQAGSIARADVADFILGAVLDNAFPYLRKAPCISSVGGTGWTKDRSASAR 720
            IAVFGA+GL G E  YQAL++G +V    R+PSKL  P GS G EA + ++   L ++QG VT LEDV++    G VT VVV+LGG+T+ VG+TMLTDGT+NII AMK  + KR+AVVTSIG GDS +QAPF F++LM T+M  +  DKNNQEALF +  GIG +L+Y IVRPGGLTVE PTGVINVIDG+AGSIAR DVADF LGA+L+  F Y+RK PCISSVGGTGW KDRSA +R
Sbjct:   35 IAVFGATGLTGREAVYQALQRGLEVRVLARNPSKLLSPLGSAGTEADQLMSDPKLTVIQGDVTKLEDVEEVLKSG-VTGVVVALGGKTADVGETMLTDGTSNIIAAMKRIDAKRVAVVTSIGAGDSENQAPFFFKVLMYTMMNKIFKDKNNQEALFLN--GIGSELEYTIVRPGGLTVEAPTGVINVIDGEAGSIARGDVADFCLGAILEPDFAYIRKTPCISSVGGTGWIKDRSAKSR 270          
BLAST of jgi.p|Trimin1|157554 vs. uniprot
Match: K0TNE0_THAOC (NAD(P)-bd_dom domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TNE0_THAOC)

HSP 1 Score: 289 bits (740), Expect = 2.300e-95
Identity = 152/242 (62.81%), Postives = 175/242 (72.31%), Query Frame = 1
Query:    4 IAVFGASGLLGSEVTYQALKQGHKVVAFVRDPSKLTVPKGSGGDEAGKPLTGDNLKIVQGSVTNLEDVDKAFADGDVTSVVVSLGGRTSKVGKTMLTDGTTNIINAMKAHNVKRIAVVTSIGVGDSYSQAPFAFRMLMNTVMRVMIADKNNQEALFTSADGIGKDLDYVIVRPGGLTVEKPTGVINVIDGQAGSIARADVADFILGAVLDNAFPYLRKAPCISSVGGTGWTKDRSASARGEM 729
            IAVFGASGL  SE  YQALK G  VV   R+PS L VPKGSGG +A  PL  + L ++ G VT + DV+KA  + D+  V+V+LGG+TS VG TMLTDGT NII AMK   VKR+ VVTSIG GDS  QAPFAF++LM TVM+ +  DKNNQE     +      L+Y IVRPGGLTV+ PTGVINVIDG+AGSI RADVA F LGAV D  F Y+ KAPCISSVGGT W KDRS +ARGEM
Sbjct:   39 IAVFGASGLTASECVYQALKDGDNVVGLTRNPSNLKVPKGSGGADAENPLVDEKLTLIGGDVTKMSDVEKAVFENDIDGVIVALGGKTSDVGDTMLTDGTNNIIAAMKDKGVKRLCVVTSIGAGDSKDQAPFAFKLLMMTVMKKIFTDKNNQEKAVEESG-----LEYCIVRPGGLTVDAPTGVINVIDGEAGSIPRADVAQFCLGAVKDPDFAYINKAPCISSVGGTSWVKDRSKAARGEM 275          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|157554 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z045_9STRA5.280e-168100.00Flavine reductase n=1 Tax=Tribonema minus TaxID=30... [more]
A0A836C907_9STRA1.200e-11874.38Flavine reductase n=1 Tax=Tribonema minus TaxID=30... [more]
D7FYW5_ECTSI3.610e-10666.53Flavine reductase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A7S4GJG4_9EUGL1.300e-9765.00Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S4A4Y4_9STRA4.820e-9763.22Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2UG26_9STRA9.550e-9762.66Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A0G4GNW0_9ALVE1.060e-9664.53NAD(P)-bd_dom domain-containing protein n=1 Tax=Ch... [more]
A0A7S2RKE8_9STRA1.490e-9661.83Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A813F7S5_POLGL2.150e-9563.60Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
K0TNE0_THAOC2.300e-9562.81NAD(P)-bd_dom domain-containing protein n=1 Tax=Th... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_3contigContig_3:1284900..1288901 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|157554|e_gw1.3.131.1
DescriptionNAD(P)H-binding
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs29JK8@1|root,2RSUR@2759|Eukaryota
Evalue5.92e-107
Seed ortholog2880.D7FYW5
Hectar predicted targeting categoryother localisation
TranscriptId157876
TrackFilteredModels1
ProteinId157554
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157554gene_403Tribonema minus UTEX_B_3156 geneContig_3 1284900..1288901 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157554Trimin1|157554|e_gw1.3.131.1Tribonema minus UTEX_B_3156 polypeptideContig_3 1284900..1288901 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_403_5exon_403_5Tribonema minus UTEX_B_3156 exonContig_3 1284900..1284974 -
exon_403_4exon_403_4Tribonema minus UTEX_B_3156 exonContig_3 1285239..1285315 -
exon_403_3exon_403_3Tribonema minus UTEX_B_3156 exonContig_3 1286130..1286390 -
exon_403_2exon_403_2Tribonema minus UTEX_B_3156 exonContig_3 1287206..1287353 -
exon_403_1exon_403_1Tribonema minus UTEX_B_3156 exonContig_3 1288731..1288901 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_403CDS_403Tribonema minus UTEX_B_3156 CDSContig_3 1288731..1288901 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_403 ID=mRNA_403|Name=jgi.p|Trimin1|157554|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=732bp|location=Sequence derived from alignment at Contig_3:1284900..1288901- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGATCGCAGTGTTTGGAGCTAGTGGACTTTTGGGCTCGGAGGTCACATA
CCAGGCTCTCAAGCAAGGGCACAAGGTTGTGGCCTTTGTCAGGGACCCCT
CGAAGCTCACGGTGCCTAAGGGCAGCGGCGGGGACGAAGCGGGAAAGCCG
CTCACCGGTGACAACCTCAAGATCGTGCAAGGGTCAGTGACCAACTTGGA
AGATGTAGACAAGGCCTTTGCCGATGGCGACGTGACCTCTGTGGTCGTGT
CGCTCGGTGGCAGGACTAGCAAGGTCGGCAAGACCATGCTGACGGACGGG
ACCACCAACATCATCAACGCCATGAAGGCGCACAACGTGAAGCGCATCGC
GGTGGTCACCTCCATCGGCGTCGGCGACAGCTACTCGCAGGCGCCATTCG
CCTTCCGGATGCTGATGAACACGGTCATGCGCGTCATGATCGCGGACAAG
AACAACCAGGAGGCGCTCTTCACGAGCGCCGATGGCATCGGCAAGGATCT
CGACTACGTGATCGTGCGGCCGGGAGGGCTGACGGTGGAGAAGCCCACCG
GCGTCATCAACGTGATTGATGGACAAGCAGGCTCCATCGCACGCGCCGAC
GTGGCGGACTTTATTCTGGGGGCAGTGCTCGACAATGCGTTCCCCTACCT
GCGCAAGGCTCCCTGCATCTCATCGGTGGGCGGCACCGGCTGGACCAAGG
ACAGGTCCGCATCTGCACGGGGCGAAATGTAA
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protein sequence of jgi.p|Trimin1|157554

>Trimin1|157554|e_gw1.3.131.1 ID=Trimin1|157554|e_gw1.3.131.1|Name=jgi.p|Trimin1|157554|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=244bp
MIAVFGASGLLGSEVTYQALKQGHKVVAFVRDPSKLTVPKGSGGDEAGKP
LTGDNLKIVQGSVTNLEDVDKAFADGDVTSVVVSLGGRTSKVGKTMLTDG
TTNIINAMKAHNVKRIAVVTSIGVGDSYSQAPFAFRMLMNTVMRVMIADK
NNQEALFTSADGIGKDLDYVIVRPGGLTVEKPTGVINVIDGQAGSIARAD
VADFILGAVLDNAFPYLRKAPCISSVGGTGWTKDRSASARGEM*
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mRNA from alignment at Contig_3:1284900..1288901-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_403 ID=mRNA_403|Name=jgi.p|Trimin1|157554|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4002bp|location=Sequence derived from alignment at Contig_3:1284900..1288901- (Tribonema minus UTEX_B_3156 )
ATGATCGCAGTGTTTGGAGCTAGTGGACTTTTGGGCTCGGAGGTCACATA CCAGGCTCTCAAGCAAGGGCACAAGGTTGTGGCCTTTGTCAGGGACCCCT CGAAGCTCACGGTGCCTAAGGGCAGCGGCGGGGACGAAGCGGGAAAGCCG CTCACCGGTGACAACCTCAAGGTAATGTGGTTGATTGACTTCTTGCATTT TTGTAGATGAGAACGCTGCAGATGTCATTCATGCTCACGCTCTTCTGCGT TGGGCAAGAAAGGGTTTGACGTGTGAGTTGTGTGAGTGGCGAGGGGCTTC TCAAGCTTCAGCCTCTGTGCCAGGTGCACTCTGTGTGTTGTAACCTCCCC ACCATACCCTCTGTACTGCACTCTTTGTGCCGTAACCTCTGTGCTATATA TATCCATGATCCATAACGAATACTCATGTAATTGTCGGGATGAAGGCCGC ATGATTGACCGGCTGCTGGCAGTGCAGATGCAGCCGAAAGCTCAAGCTGT GTCACACCTCACAACAATTCGGACCCTAGCTGGTCACACCGAAGTAGCTG GTCATAAGTCTTTAGTTTTACTTTACTTTCTTTTTTGTATTTTTTTTTCG CACTCTGTAGTGCACCTGTTGAACTCTGTGCTGTAGTCCTAGAACCACGC TCTTTGCACTCAAACCTCGATGCTGCGTCACGCCTCAATAAATTGGACCC TAGTTGGTCGCAAGTATATCCTTACTCGTTTGCAGTATTTTGTTTCGCAC TCTCTGGTGCAATTGTTGAACTCTGTGCTGTAGTCCTAGAACCACACTCT TTGCACTGTACCCTCCTGCACTGTACAGCATGTACTGTACTGTACTCTCT GTTGCCACACCATGGAGCGCCGCCGGCTCAGTGGCAGCAGCGTTGCAGCT GCAGGCCGAGTACATCGCGCATCAGGAGAGAACAATGGTGTGACAGCACA GCGCTGCAGTGGGTGCGCGGTTGATTTTTAAAACCTGATCAGTCACTGCT GAGCACTGCTGCTGAGCACTGCTGCTGCACCACCAAAGGATCTGCTGCGG TCGCTGTGAGCCTGGCGGTCCACCTTTAGAGGAGGAGGATGCACCTTCTG CGCTGAGCTTTGAGCACTGAACTCTCTCTGTACTCAAAATCTTCCTCAAC TGAGTTATAAATATGGAGCCCCCAAAGGAAGCTGGGTGTCCTATGCAATT GTGAAGTTTGCTACACTCACCTGAACTTACTCTTCCATCACAGATCGTGT CAGGGTCGGTGACGAATTTGGAGGATGTGGACTGAACTCCCTCTGCAGTC ACATCTCTCTATACTGCACTCTTTCTGCATCAAACTCAACATTCCGCTTT GCCTGCGTACCGAACTCACCGTGTACTGTGCTCTGCAAACGGTACTGCCT GTGCAGGTCGTGCAAGGACCGGTGACCCACTTGGAAGATGTAGACAAGGC CTTCGCAGTCACACCTCTCTGTACTGCGCTCTCTACGCATCAACCTCAAG AGTTCGCTTTGCCATATCGAACTTGCCATTACTGCGCTGCCTGTGCAGAT CGTGCAAGGGTCAGTGACCAACTTGGAAGATGTAGACAAGGCCTTTGCCG ATGGCGACGTGACCTCTGTGGTCGTGTCGCTCGGTGGCAGGACTAGCAAG GTCGGCAAGACCATGCTGACGGACGGGACCACCAACATCATCAACGGTGA GCGTCACCACAGCACAAGCTGAGCATTGCTGTTCACATGAGCGAGTGAGA AACCCTGGCGAGGTTGGCGCCATGCGAACCGATTGCACAATAATCTTCAA AGCGCCGCCAACTCTGCCATCTCAAGATTAGAAACACAACCTACCTTCGT CAATGTTGAAGTAACAACATAACCCACGAAGTACGGTCAAGCGCGATGTG CGTCGGCTTACCATGTGCTCTCGAACAAGCAGCTTGCGCGCAGCATAGGC GTTGCATGCGTCAAACCCACTAGCGCAGATGCTGCATGACTGGCGCCGCT GCAGCCGTTCAGGAGCACAATACAAAAAACGCGCAAGGGCACGCACATCT GACACTGAGTATGCGGCCGTGACTTTAATGCGACATCGCGGTTGGACAAC TCTCGGATTTTCAATCGAGCGGCCATGTGGGAAATGCGCCACAATTGCAG CCTGAAGGCGCACATGTGGTTGCGCACACATGCAAACTTCAAACGCACGC CTCGTCCTCGCCGCAACTTTTCTCAATTGTAGGATTAGAGATAGACCCCA GACCTAATTCCGCACCTGACCCTGTCTCACCCTTCCAATGCCCCTCGTTG CAGCCATGAAGGCGCACAACGTGAAGAGCATCACGGTCGTCACCTCCATC TTAGGGCTAGGGTTAGACCTAGCCCCGAACCCCCAACCTGACGCTATCTC ACCCTCAAAGTGGCCCTCGTTGCAGCCATGAAGGCGCACAACGTGAAGCG CATTAAAGTTAGACCCTAGACCCAACTCTGAAGCCTGATCCTATCTCATC CTCCGATGCAGCCATGAAGGCGCACAACGTGAAGCGCATCGCGGTGGTCA CCTCCATCGGCGTCGGCGACAGCTACTCGCAGGCGCCATTCGCCTTCCGG ATGCTGATGAACACGGTCATGCGCGTCATGATCGCGGACAAGAACAACCA GGAGGCGCTCTTCACGAGCGCCGATGGCATCGGCAAGGATCTCGACTACG TGATCGTGCGGCCGGGAGGGCTGACGGTGGAGAAGCCCACCGGCGTCATC AACGTGATTGATGGACAAGCAGGTGTGTAGGCAATGCGCCACTTGCGGAA AGCAGAAATGCGTCCCCAATGTAGTGAGGCGTGTATGTAGGGTTATGTGA TGGCGCGCGATCGCCGTAACTAGTGCGCGCGTTTAGGTAGGGGTCAAGCG GTCAAGCCAGGTAGGTGGGTCTGGTCGCACAGGAGTGTTTACACTGTCGT GCTGGCACCTTGTCCCAATTCAACTCTACTGCGTAACTTTAAAAGATGGG GCTCAAGCGGTTGGATCAACTGCTCCGGTTGGCGACATGGCCTCTGTGAT GTATGAGGATCGTGGTCAGCGTATGCCGTCCTGATCCTGCACTTGTCACA TACTTCTAAGTACTTGTCACTGTTTCCCATTTGATGCTTAAGCGAGCTCT CGCACTTCCGCTGCCAGCACACATGTAGAGATTCCTCAAGTGCCACTGCT GCTGGCACTCGGACAAGCTCACAGGGCGCATGCTACTGATCAGGGCTACG ATTAGGGTTAGGGTTTGATTGCAGCCGCAGGACTGCCCCACATGTTTGCT GAGTTCACCCCACTGCACCAGCAGACGCCAGATAGTGCCTGCCGCATGCC ACATGCAGCGCCCGAAGTGGCATCATACCCGGCAGCACTCTTGCTGCCCA CATTCGTGTCCTCAGTTGCAACTCTCATATTCGTGCACTCAGTTAAGCAT GTGCTGGTGCATCGGCAGCGCTCTATGCGGATTACATTCATGCACTCAGT TGCATGTGCTGACACACGTCGGCAGCTCTCTATTATGCGACTTACATTCG CGCTCTCTATTGCACGCGCTGGTGCGTCGTTTGCAGGCTCCATCGCACGC GCCGACGTGGCGGACTTTATTCTGGGGGCAGTGCTCGACAATGCGTTCCC CTACCTGCGCAAGGTGCGTGCGTGATGCTTGACAGCAATGCTTCACAGAA CAGTGTCATCACGCAGACGCGTCGCTGAATGTGGTCTCTCGAACCTTGGT GGTCTCACCCCCGCGTTCACTGTTTGAATGCGATCATCCACTCAGGCAGA CGTGTAACCGCCGATTTCACTTGCCGTGCCAGCGCCGAACGCTCATGCCG CTTGAAGTTTGATGCGCGATCTCAATGTATGCACGACACACAACTCTCTC TGTGTGTTTGTATGTGACTGCGCGCAGGCTCCCTGCATCTCATCGGTGGG CGGCACCGGCTGGACCAAGGACAGGTCCGCATCTGCACGGGGCGAAATGT AA
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Coding sequence (CDS) from alignment at Contig_3:1284900..1288901-

>mRNA_403 ID=mRNA_403|Name=jgi.p|Trimin1|157554|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=732bp|location=Sequence derived from alignment at Contig_3:1284900..1288901- (Tribonema minus UTEX_B_3156 )
ATGATCGCAGTGTTTGGAGCTAGTGGACTTTTGGGCTCGGAGGTCACATA
CCAGGCTCTCAAGCAAGGGCACAAGGTTGTGGCCTTTGTCAGGGACCCCT
CGAAGCTCACGGTGCCTAAGGGCAGCGGCGGGGACGAAGCGGGAAAGCCG
CTCACCGGTGACAACCTCAAGATCGTGCAAGGGTCAGTGACCAACTTGGA
AGATGTAGACAAGGCCTTTGCCGATGGCGACGTGACCTCTGTGGTCGTGT
CGCTCGGTGGCAGGACTAGCAAGGTCGGCAAGACCATGCTGACGGACGGG
ACCACCAACATCATCAACGCCATGAAGGCGCACAACGTGAAGCGCATCGC
GGTGGTCACCTCCATCGGCGTCGGCGACAGCTACTCGCAGGCGCCATTCG
CCTTCCGGATGCTGATGAACACGGTCATGCGCGTCATGATCGCGGACAAG
AACAACCAGGAGGCGCTCTTCACGAGCGCCGATGGCATCGGCAAGGATCT
CGACTACGTGATCGTGCGGCCGGGAGGGCTGACGGTGGAGAAGCCCACCG
GCGTCATCAACGTGATTGATGGACAAGCAGGCTCCATCGCACGCGCCGAC
GTGGCGGACTTTATTCTGGGGGCAGTGCTCGACAATGCGTTCCCCTACCT
GCGCAAGGCTCCCTGCATCTCATCGGTGGGCGGCACCGGCTGGACCAAGG
ACAGGTCCGCATCTGCACGGGGCGAAATGTAA
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