mRNA_4007 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|347763
Unique Name	mRNA_4007
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

[Close]

BLAST of jgi.p|Trimin1|347763 vs. uniprot
Match: A0A836CK55_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK55_9STRA)

HSP 1 Score: 515 bits (1327), Expect = 6.750e-185
Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 1

Query:    1 MTGGAPSDSAASSDTPLKTNLMETLSSVKAGPCGDEIYCMVTHQHLPRHVVTGEHLLPRAWNTLNKTLFGFADIDDVRNGVLMLGVIARAYARFQLCLIPQLVPPLSYAIVVHVLDPNLRNKTLVSALPQEYGECCPSNAADDAQLTALLTTRLGGTTFGDLHGTKVTADPDRQTDYPSDPLLGPYARVLYWQTLRCMCEARQKRWPAEFLPQLDIASIAPGYAERVNVWQACSHRVSGAVASDAAGSDEVSD 759
            MTGGAPSDSAASSDTPLKTNLMETLSSVKAGPCGDEIYCMVTHQHLPRHVVTGEHLLPRAWNTLNKTLFGFADIDDVRNGVLMLGVIARAYARFQLCLIPQLVPPLSYAIVVHVLDPNLRNKTLVSALPQEYGECCPSNAADDAQLTALLTTRLGGTTFGDLHGTKVTADPDRQTDYPSDPLLGPYARVLYWQTLRCMCEARQKRWPAEFLPQLDIASIAPGYAERVNVWQACSHRVSGAVASDAAGSDEVSD
Sbjct:    1 MTGGAPSDSAASSDTPLKTNLMETLSSVKAGPCGDEIYCMVTHQHLPRHVVTGEHLLPRAWNTLNKTLFGFADIDDVRNGVLMLGVIARAYARFQLCLIPQLVPPLSYAIVVHVLDPNLRNKTLVSALPQEYGECCPSNAADDAQLTALLTTRLGGTTFGDLHGTKVTADPDRQTDYPSDPLLGPYARVLYWQTLRCMCEARQKRWPAEFLPQLDIASIAPGYAERVNVWQACSHRVSGAVASDAAGSDEVSD 253

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|347763 vs. uniprot

BLAST of jgi.p|Trimin1|347763 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A836CK55_9STRA	6.750e-185	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_15	contig	Contig_15:1293537..1295569 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|347763\|estExt_Genemark1.C_Ctg_150150
Description	HNH endonuclease
COG category	S
Max annot lvl	33090\|Viridiplantae
EggNOG OGs	2CZRZ@1\|root,2SBFT@2759\|Eukaryota,382XB@33090\|Viridiplantae
Evalue	1.66e-11
Seed ortholog	3055.EDP06218
Hectar predicted targeting category	other localisation
TranscriptId	348085
Track	FilteredModels1
ProteinId	347763

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|347763	gene_4007	Tribonema minus UTEX_B_3156	gene	Contig_15 1293537..1295569 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_4007_1	exon_4007_1	Tribonema minus UTEX_B_3156	exon	Contig_15 1293537..1293724 +
exon_4007_2	exon_4007_2	Tribonema minus UTEX_B_3156	exon	Contig_15 1294396..1294597 +
exon_4007_3	exon_4007_3	Tribonema minus UTEX_B_3156	exon	Contig_15 1295196..1295569 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_4007	CDS_4007	Tribonema minus UTEX_B_3156	CDS	Contig_15 1293537..1293724 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_4007	UTR3_4007	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_15 1295568..1295569 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|347763	Trimin1\|347763\|estExt_Genemark1.C_Ctg_150150	Tribonema minus UTEX_B_3156	polypeptide	Contig_15 1293537..1295567 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_15:1293537..1295569+
coding sequence from alignment at Contig_15:1293537..1295569+

spliced messenger RNA

>mRNA_4007 ID=mRNA_4007|Name=jgi.p|Trimin1|347763|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=764bp|location=Sequence derived from alignment at Contig_15:1293537..1295569+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGGCGGGGCGCCTAGCGACTCTGCAGCTTCCTCCGACACGCCTCT
CAAGACGAACCTGATGGAGACACTCAGTTCCGTTAAGGCAGGGCCATGCG
GTGATGAGATCTACTGCATGGTCACACACCAGCATCTGCCTAGGCACGTT
GTCACGGGGGAACACCTGCTCCCCAGAGCCTGGAACACGTTGAACAAGAC
GCTTTTCGGCTTTGCGGACATCGATGACGTCCGCAACGGGGTTCTGATGC
TGGGAGTCATTGCGCGCGCGTATGCCCGATTCCAGCTATGTCTAATTCCC
CAGCTTGTGCCCCCCCTGAGCTATGCGATCGTCGTTCACGTTCTGGACCC
GAATCTGCGCAACAAGACTCTGGTGTCTGCACTGCCCCAGGAGTATGGCG
AATGTTGTCCGTCCAATGCCGCCGACGACGCGCAGCTGACGGCCCTTCTC
ACCACCCGCCTGGGAGGCACCACTTTCGGCGACCTGCATGGCACGAAGGT
TACAGCTGACCCTGACAGGCAGACAGACTACCCCTCAGACCCGCTGCTCG
GGCCCTACGCGCGTGTACTGTACTGGCAGACACTGCGCTGCATGTGCGAG
GCTCGGCAGAAGAGGTGGCCCGCAGAGTTTCTGCCGCAGCTTGACATTGC
GAGCATAGCGCCGGGCTATGCAGAGCGCGTGAATGTGTGGCAGGCGTGCA
GCCACCGTGTCTCCGGTGCAGTGGCCTCTGATGCAGCTGGTTCTGATGAA
GTTTCGGATTGAAG

protein sequence of jgi.p|Trimin1|347763

>Trimin1|347763|estExt_Genemark1.C_Ctg_150150 ID=Trimin1|347763|estExt_Genemark1.C_Ctg_150150|Name=jgi.p|Trimin1|347763|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=254bp
MTGGAPSDSAASSDTPLKTNLMETLSSVKAGPCGDEIYCMVTHQHLPRHV
VTGEHLLPRAWNTLNKTLFGFADIDDVRNGVLMLGVIARAYARFQLCLIP
QLVPPLSYAIVVHVLDPNLRNKTLVSALPQEYGECCPSNAADDAQLTALL
TTRLGGTTFGDLHGTKVTADPDRQTDYPSDPLLGPYARVLYWQTLRCMCE
ARQKRWPAEFLPQLDIASIAPGYAERVNVWQACSHRVSGAVASDAAGSDE
VSD*

mRNA from alignment at Contig_15:1293537..1295569+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4007 ID=mRNA_4007|Name=jgi.p|Trimin1|347763|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2033bp|location=Sequence derived from alignment at Contig_15:1293537..1295569+ (Tribonema minus UTEX_B_3156 )
ATGACAGGCGGGGCGCCTAGCGACTCTGCAGCTTCCTCCGACACGCCTCT
CAAGACGAACCTGATGGAGACACTCAGTTCCGTTAAGGCAGGGCCATGCG
GTGATGAGATCTACTGCATGGTCACACACCAGCATCTGCCTAGGCACGTT
GTCACGGGGGAACACCTGCTCCCCAGAGCCTGGAACACGTGAGTTGAGGC
CTGATAATGTGTTTGCGTGATCATATTGACATGGCTGGGGGTCGCAGGCA
AACAGCAGAGCAGCATAAAGGCCGACATTGGTTGATTAGTGGTGGTGGGA
GCCATGACAGCAGTACTCGCCGTGGGGGGCCTAAGAACAGTGAAGTGTGT
TTACAGATGGGCTGAGGAGGTGACACTCCACATATAACTTAAACTCAGGA
GCCTGCACCTAGGGCTTGGACCCCCCATCCATATCAATGGCTTCAGAGGA
GAGGGCGCTTCACCTGCAGACTTGGTCGCAGATTTGTATGCATCTGCGCG
TGCAACCCAGGGGGATCAACTGCCTGTCACGTTTTTGATCGCAATTGACT
ATGGCAATTGTTCTGGCGGTGCGCATCTTTCATGTTGTGACACTTGTGCC
GCATTGGTCTAGAGTGGTGATGTCGCATCTGGCACCAGAGCCAGACGCTT
GGGGTTACTGCATCGTTGTGAACAATGTACTACATGTCACGTTCAAAGCT
TGTGGCAAAAAGCAGTGAAGGCATTCAGCACACCACAATTTGCTTTTCTT
AAAGTGATCAAGGTGCGGGATTGAGTGTGCCGCGGCTCTGCTACAACTCA
CTCCTGGATGTTTACCAAGTACGCAATGCCCCTGTCTCACTGCTCCATGC
TGCGCTCAGGTTGAACAAGACGCTTTTCGGCTTTGCGGACATCGATGACG
TCCGCAACGGGGTTCTGATGCTGGGAGTCATTGCGCGCGCGTATGCCCGA
TTCCAGCTATGTCTAATTCCCCAGCTTGTGCCCCCCCTGAGCTATGCGAT
CGTCGTTCACGTTCTGGACCCGAATCTGCGCAACAAGACTCTGGTGTCTG
CACTGCCCCAGGTGCGCTTGATTGCGTGATCTGATTGTTGCAATATAGAG
AGCTGTTGCTCACTAGCCTGTTGCTCCACACCCGCAGAGCTAGACATCAA
GGTGACAACGCTGCAGAAGACCGTGTGCTGCTAGAAGTAAATGTGTTGTA
ACCTGTCTACCGGCAAGTGTAACTGCCGTAACCGTCAAGCGTGCAAACAA
TGAGCATGTAACTGCCATATGCTCCAACACTTTTGAGATATCAAGTGCGT
GCCGTCCGTACGACAGCACAGTTGCGTCGAGGTGTGCCCGATGACAAGGT
GGTTCTGTAAGCCGTGCGTAGCAGGTCGCCACTGAGGCTTGCATACCCCA
TGCTCTGTCGCGGCCAGGCTTGAAAGGGACTGTCTGGTGCATCACATGGT
GCCAAGGACAATGTCTGTGACCAACATCAATTGTGAAGTTGCAGATGTGT
CTCCGCTTTGCAACGGACCGCTTGCAGTCTTACTGTATTGAACACAAGGC
CATTGTTTACTCTTGGCATCGGTCTTTCACTCCACACTGCCGTGACAGTC
GGAATAGTCACGCCAACTTTGAACTGATGCGTGCTTGCTGCGTCTGCACT
TGGCCTCAGGAGTATGGCGAATGTTGTCCGTCCAATGCCGCCGACGACGC
GCAGCTGACGGCCCTTCTCACCACCCGCCTGGGAGGCACCACTTTCGGCG
ACCTGCATGGCACGAAGGTTACAGCTGACCCTGACAGGCAGACAGACTAC
CCCTCAGACCCGCTGCTCGGGCCCTACGCGCGTGTACTGTACTGGCAGAC
ACTGCGCTGCATGTGCGAGGCTCGGCAGAAGAGGTGGCCCGCAGAGTTTC
TGCCGCAGCTTGACATTGCGAGCATAGCGCCGGGCTATGCAGAGCGCGTG
AATGTGTGGCAGGCGTGCAGCCACCGTGTCTCCGGTGCAGTGGCCTCTGA
TGCAGCTGGTTCTGATGAAGTTTCGGATTGAAG

Coding sequence (CDS) from alignment at Contig_15:1293537..1295569+

>mRNA_4007 ID=mRNA_4007|Name=jgi.p|Trimin1|347763|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=762bp|location=Sequence derived from alignment at Contig_15:1293537..1295569+ (Tribonema minus UTEX_B_3156 )
ATGACAGGCGGGGCGCCTAGCGACTCTGCAGCTTCCTCCGACACGCCTCT
CAAGACGAACCTGATGGAGACACTCAGTTCCGTTAAGGCAGGGCCATGCG
GTGATGAGATCTACTGCATGGTCACACACCAGCATCTGCCTAGGCACGTT
GTCACGGGGGAACACCTGCTCCCCAGAGCCTGGAACACGTTGAACAAGAC
GCTTTTCGGCTTTGCGGACATCGATGACGTCCGCAACGGGGTTCTGATGC
TGGGAGTCATTGCGCGCGCGTATGCCCGATTCCAGCTATGTCTAATTCCC
CAGCTTGTGCCCCCCCTGAGCTATGCGATCGTCGTTCACGTTCTGGACCC
GAATCTGCGCAACAAGACTCTGGTGTCTGCACTGCCCCAGGAGTATGGCG
AATGTTGTCCGTCCAATGCCGCCGACGACGCGCAGCTGACGGCCCTTCTC
ACCACCCGCCTGGGAGGCACCACTTTCGGCGACCTGCATGGCACGAAGGT
TACAGCTGACCCTGACAGGCAGACAGACTACCCCTCAGACCCGCTGCTCG
GGCCCTACGCGCGTGTACTGTACTGGCAGACACTGCGCTGCATGTGCGAG
GCTCGGCAGAAGAGGTGGCCCGCAGAGTTTCTGCCGCAGCTTGACATTGC
GAGCATAGCGCCGGGCTATGCAGAGCGCGTGAATGTGTGGCAGGCGTGCA
GCCACCGTGTCTCCGGTGCAGTGGCCTCTGATGCAGCTGGTTCTGATGAA
GTTTCGGATTGA