mRNA_3999 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|347759
Unique NamemRNA_3999
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|347759 vs. uniprot
Match: A0A835ZD61_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD61_9STRA)

HSP 1 Score: 173 bits (439), Expect = 5.600e-55
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 2 
Query:   20 MPSSCLCTSLPAAAPSTASRPRWRTTHLGWRMSPSPSSSTRSGPRRHYQMTMTTMTWSEGACPACVNTYIPCACKYNDRSRW 265
            MPSSCLCTSLPAAAPSTASRPRWRTTHLGWRMSPSPSSSTRSGPRRHYQMTMTTMTWSEGACPACVNTYIPCACKYNDRSRW
Sbjct:    1 MPSSCLCTSLPAAAPSTASRPRWRTTHLGWRMSPSPSSSTRSGPRRHYQMTMTTMTWSEGACPACVNTYIPCACKYNDRSRW 82
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347759 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZD61_9STRA5.600e-55100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_15contigContig_15:1253907..1256356 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|347759|estExt_Genemark1.C_Ctg_150146
Hectar predicted targeting categoryother localisation
TranscriptId348081
TrackFilteredModels1
ProteinId347759
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347759gene_3999Tribonema minus UTEX_B_3156 geneContig_15 1253907..1256356 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3999_1exon_3999_1Tribonema minus UTEX_B_3156 exonContig_15 1253907..1253951 +
exon_3999_2exon_3999_2Tribonema minus UTEX_B_3156 exonContig_15 1256137..1256356 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_3999UTR5_3999Tribonema minus UTEX_B_3156 five_prime_UTRContig_15 1253907..1253925 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3999CDS_3999Tribonema minus UTEX_B_3156 CDSContig_15 1253926..1253951 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347759Trimin1|347759|estExt_Genemark1.C_Ctg_150146Tribonema minus UTEX_B_3156 polypeptideContig_15 1253926..1256356 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3999 ID=mRNA_3999|Name=jgi.p|Trimin1|347759|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=265bp|location=Sequence derived from alignment at Contig_15:1253907..1256356+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCTGGCCTGCCGCGATGCCATCGTCATGTCTGTGCACAAGTTTGC
CGGCGGCAGCGCCGTCAACAGCATCGAGGCCGCGCTGGAGGACGACGCAT
TTGGGCTGGCGCATGAGCCCGTCGCCAAGCTCATCCACACGGAGTGGACC
AAGGAGGCACTACCAGATGACCATGACGACAATGACCTGGAGTGAGGGCG
CGTGTCCCGCCTGTGTGAATACATACATACCGTGCGCATGTAAATACAAC
GACAGAAGCAGATGG
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protein sequence of jgi.p|Trimin1|347759

>Trimin1|347759|estExt_Genemark1.C_Ctg_150146 ID=Trimin1|347759|estExt_Genemark1.C_Ctg_150146|Name=jgi.p|Trimin1|347759|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=82bp
MPSSCLCTSLPAAAPSTASRPRWRTTHLGWRMSPSPSSSTRSGPRRHYQM
TMTTMTWSEGACPACVNTYIPCACKYNDRSRW
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mRNA from alignment at Contig_15:1253907..1256356+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3999 ID=mRNA_3999|Name=jgi.p|Trimin1|347759|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2450bp|location=Sequence derived from alignment at Contig_15:1253907..1256356+ (Tribonema minus UTEX_B_3156 )
ATGCCGCTGGCCTGCCGCGATGCCATCGTCATGTCTGTGCACAAGGTTTG
CTTAGTTGGCTTGCGGAGCACTAGGCGCAGCTGACGGTGTCTCTAGTGAT
CACAATCGCATCACACCACGATCTTTCAGACCAAATTGCACTTCAACAAA
CGATGCAACTTCAACGAATGGAACTTCAAACGCTCTCCAGTAGACACACA
CCCCTTGAAGGCGCAAAGTGAGTACCTGACCACCAGCAGACTATCTCTGT
GCCGGAAGATTGAGCTTGCAGTGCTTCTGATGATTACCTGAGCGATCACA
GTCCCCGCCGAAAACCTCGATGCCCATTGCACATCCCACTTGCACTTAAT
GCTTGGCCCCAAGCTTAATGGTATCACCGCTGCCTCTTGCTCCCAGGTGC
GCTGGACTGTATCCGCGTCGAGCGATTCTGGACGGTGTCGGCGCAATTGG
AAAAGCGGCGGGAGCGAAGGCGGGGAACCGCACAAAGCCTGTAGATCATG
TTCATCCCTTCCAACACTAACATGAGGCGGGGCCGAAGGCAGCACCCCCG
CTCGAGCACCGGGACCGCTGGCGATCGTGATGTGAGTGCTTAGGATTGGA
AAAAGGATTGGTCAAGGCTTGAGTCATTTGCCTCTAAAAACAACAATAGC
CCTGTGCATCGTTGAACCTGGAACCACCATCGACTGGTCTGGCAGCAATA
CAGCGGCATCAAGCCACTTGCCAATGGCTTCAAAATGCTGCGCGCAACAA
CGCAGGACACCGGGGGTGGTTGAACGCTCATGAAGTTGCCTGGTGCACTG
TGCTCTCTAATTGAAGTCATGACGGCTGCTGCTGCCGCTGCCTGTTTGCG
CCATTGTTACGCGAACAGCAAAAATTGACATCACATATGATGATGATTTG
TGCATTGTTTCAGGCTGCTGATCCGACAACGGCTTGTATACGCCCGTGCC
AGATCAAAAGTCACGTCACCAAAGTGGATTGCACCCTAGCACTCGCAAAT
CTGTGGGCAACGTTCTCAGGTCTGGCACACCTCTGACCCGTCTGAATGTC
TAGGCCGCCACTGTGGCCCTGCTGCAGGCGACGCATCCAGCAGCAGCAAA
AACGTAATTTCCATAATAACATACCTAGACTGTGAAGGCTTCTGACTTGA
CACCTTCACCAAGCCGTGGGGTGCATAGCGCTAATCCCGCACAGGAAACT
GCGAACCATCACAGTTTTGCAAGTCGCTGGTTGACGACGTGTGATTTACA
ACGTGAGAGCACGCAGTTCTAGGTTTTTACCACGTCACACAATGACTCTT
GTTGAGACAGTTGCAGCCGTCGCCAGGGCCTTACTCCCGCCGCACGCATC
TTAGGGTTAGGGTTAGCACTCAAGGTCGCAACGCGGGCCGCTTCATGGCA
ATTCTTCACAGTCCATCGAAGCGTGTTCAGAAACAGCCTGCCATCGCGCC
ACGTGATTGAGCGAGCCCCAATCGCTCCAGCTTACCGGCGGCGGCGCCGG
ACCAGAGCACCACTCTGTCGGGTGCATCATGAACTTCACAAAGTAGTCCA
TTGCAGTACGTTCTTGCAAGTGTTCCTGCGCCCTCAGAGCGAGGAAATCC
TGATATAAACCGCACGTGTACGCCGCTGCGCAGTCTGGCGGCAGCGCTAT
CAAAAGAGCAGCACTCCCTTAGGCATATCATGAACTTCAGAAAGTAGTCC
AATTTGAAACGTGTTCTCACAACCGTGCTTACTTGGAGCAAACCGGACAT
CCCCCGCGCTTGTCCGCCGCCCGCGCAGTTTGCTGGCGGCAACGCCGTCA
AGAAGCGCAAATGTTCATCATTTACTTTACAAAGTAGTCCATTGAAGTAC
GTTCTCACAACCGTGCCGAGGGAACCCTGACATCAGCCGCGCCTGACCAC
TGCCGCGCAGTCCGCCGGCGGCGGTGCCGTCAGCAAGAGTAATACCTCAT
CATTGTCAACACTCCATTATGTTTGTCATGAACGAAACACAAATACTTCG
TTGAAGTACGTTCTACAAGTGGCGCCATCTCGGAGCGATGGAGCTCTGAT
ATCAGCCGCGCCTGCCCGCCGCTGCGCAGTTTGCCGGCGGCAGTGCCTTC
AACAAGAGCAACACTTTGTTAGGTTTATCATGAGCTTCACAAAGTAATCC
ATTGAAGTACGTTCTCACAGCATCTCGGGGCGAGGAACCCTGATTGAACC
GCTTGACCGCGCCTGTCCGCCGCCGCGCAGTTTGCCGGCGGCAGCGCCGT
CAACAGCATCGAGGCCGCGCTGGAGGACGACGCATTTGGGCTGGCGCATG
AGCCCGTCGCCAAGCTCATCCACACGGAGTGGACCAAGGAGGCACTACCA
GATGACCATGACGACAATGACCTGGAGTGAGGGCGCGTGTCCCGCCTGTG
TGAATACATACATACCGTGCGCATGTAAATACAACGACAGAAGCAGATGG
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Coding sequence (CDS) from alignment at Contig_15:1253907..1256356+

>mRNA_3999 ID=mRNA_3999|Name=jgi.p|Trimin1|347759|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=246bp|location=Sequence derived from alignment at Contig_15:1253907..1256356+ (Tribonema minus UTEX_B_3156 )
ATGCCATCGTCATGTCTGTGCACAAGTTTGCCGGCGGCAGCGCCGTCAAC
AGCATCGAGGCCGCGCTGGAGGACGACGCATTTGGGCTGGCGCATGAGCC
CGTCGCCAAGCTCATCCACACGGAGTGGACCAAGGAGGCACTACCAGATG
ACCATGACGACAATGACCTGGAGTGAGGGCGCGTGTCCCGCCTGTGTGAA
TACATACATACCGTGCGCATGTAAATACAACGACAGAAGCAGATGG
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