mRNA_3987 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|347751
Unique Name	mRNA_3987
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|347751 vs. uniprot
Match: A0A836CKY5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKY5_9STRA)

HSP 1 Score: 534 bits (1375), Expect = 9.670e-190
Identity = 326/326 (100.00%), Postives = 326/326 (100.00%), Query Frame = 1

Query:    7 MGKDGYSVGEMVWCQWGLKYSWWPGKVLGYDTDADEYVVXXXXXXXXXXEVECEEDARIEPWQGPAAQMMAFVDGWAEATRVIRDIQTRIGRDFYGDLVRAVAAYRRCAPAALPQMAPRERWNTYINALHSFVLAGPAPELPXXXXXXXXXXXXXXXXXGTKGQHAGPPAKPTXXXXXXXXXXXXXXXXXXXXXGKRQKVAQNGSDSAAAFVVNKIPDDSDDNEEGKGKWDLSGAPRRRPSSGKPAGAAAVKAENGGSDLGEGSGGEEEGGEGGIWGKPGGVLSDLGPGWEEQAALMAAVIFSSAAASADAELLRTAGCAAEPSPQ 984
            MGKDGYSVGEMVWCQWGLKYSWWPGKVLGYDTDADEYVVXXXXXXXXXXEVECEEDARIEPWQGPAAQMMAFVDGWAEATRVIRDIQTRIGRDFYGDLVRAVAAYRRCAPAALPQMAPRERWNTYINALHSFVLAGPAPELPXXXXXXXXXXXXXXXXXGTKGQHAGPPAKPTXXXXXXXXXXXXXXXXXXXXXGKRQKVAQNGSDSAAAFVVNKIPDDSDDNEEGKGKWDLSGAPRRRPSSGKPAGAAAVKAENGGSDLGEGSGGEEEGGEGGIWGKPGGVLSDLGPGWEEQAALMAAVIFSSAAASADAELLRTAGCAAEPSPQ
Sbjct:    1 MGKDGYSVGEMVWCQWGLKYSWWPGKVLGYDTDADEYVVXXXXXXXXXXEVECEEDARIEPWQGPAAQMMAFVDGWAEATRVIRDIQTRIGRDFYGDLVRAVAAYRRCAPAALPQMAPRERWNTYINALHSFVLAGPAPELPXXXXXXXXXXXXXXXXXGTKGQHAGPPAKPTXXXXXXXXXXXXXXXXXXXXXGKRQKVAQNGSDSAAAFVVNKIPDDSDDNEEGKGKWDLSGAPRRRPSSGKPAGAAAVKAENGGSDLGEGSGGEEEGGEGGIWGKPGGVLSDLGPGWEEQAALMAAVIFSSAAASADAELLRTAGCAAEPSPQ 326

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|347751 vs. uniprot

BLAST of jgi.p|Trimin1|347751 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A836CKY5_9STRA	9.670e-190	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_15	contig	Contig_15:1155011..1158850 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|347751\|estExt_Genemark1.C_Ctg_150136
Hectar predicted targeting category	other localisation
TranscriptId	348073
Track	FilteredModels1
ProteinId	347751

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|347751	gene_3987	Tribonema minus UTEX_B_3156	gene	Contig_15 1155011..1158850 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|347751	Trimin1\|347751\|estExt_Genemark1.C_Ctg_150136	Tribonema minus UTEX_B_3156	polypeptide	Contig_15 1155017..1158850 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_3987_1	exon_3987_1	Tribonema minus UTEX_B_3156	exon	Contig_15 1155011..1155094 +
exon_3987_2	exon_3987_2	Tribonema minus UTEX_B_3156	exon	Contig_15 1156750..1156785 +
exon_3987_3	exon_3987_3	Tribonema minus UTEX_B_3156	exon	Contig_15 1156941..1157182 +
exon_3987_4	exon_3987_4	Tribonema minus UTEX_B_3156	exon	Contig_15 1158226..1158850 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_3987	UTR5_3987	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_15 1155011..1155016 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_3987	CDS_3987	Tribonema minus UTEX_B_3156	CDS	Contig_15 1155017..1155094 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_15:1155011..1158850+
coding sequence from alignment at Contig_15:1155011..1158850+

spliced messenger RNA

>mRNA_3987 ID=mRNA_3987|Name=jgi.p|Trimin1|347751|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=987bp|location=Sequence derived from alignment at Contig_15:1155011..1158850+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGGGTGATGGGGAAGGACGGGTACAGCGTTGGCGAGATGGTGTGGTGCCA
GTGGGGCTTGAAATACAGCTGGTGGCCGGGGAAGGTCCTCGGCTACGACA
CCGACGCCGACGAGTACGTTGTCCTCGGCTACGACGCCGACGCAGACGAG
TACGAAGTGGAGTGCGAGGAGGACGCGCGCATCGAGCCGTGGCAGGGCCC
CGCGGCGCAGATGATGGCGTTCGTCGACGGCTGGGCGGAGGCGACGCGCG
TCATCCGCGACATACAGACGCGCATCGGCCGCGACTTCTACGGCGACCTC
GTGCGCGCCGTCGCCGCGTACCGGCGCTGCGCGCCCGCGGCGCTGCCGCA
GATGGCGCCGAGAGAGCGCTGGAACACGTACATCAACGCGCTGCACAGCT
TCGTCCTCGCAGGTCCGGCGCCGGAGCTGCCGCCGCCGCCGCCGGAAGCC
GCGGCAGCAGCGGCGGCAGCCAAGGCGGCGGCAGGGACCAAGGGGCAGCA
CGCAGGGCCGCCGGCGAAACCGACACCGGCGGCAGCGACGGCAGCGCACG
CGCGCAGCAGCAGCGGCGGCGACGGCGACGGCAGCGGCGGCAAGCGGCAG
AAGGTGGCGCAGAACGGCAGCGACTCCGCCGCCGCCTTCGTCGTCAACAA
GATCCCCGACGACAGCGACGACAACGAGGAGGGCAAGGGCAAGTGGGACC
TGTCCGGCGCACCGCGGCGCCGCCCGAGCAGCGGCAAGCCCGCCGGCGCC
GCCGCCGTGAAGGCGGAGAACGGCGGCAGCGACCTGGGGGAGGGGAGCGG
GGGCGAGGAGGAGGGGGGGGAGGGGGGCATCTGGGGGAAGCCCGGGGGCG
TGCTGAGCGACCTCGGGCCCGGCTGGGAGGAGCAGGCGGCGCTCATGGCG
GCGGTGATCTTCAGCAGCGCGGCGGCGAGCGCCGACGCGGAGCTGTTGCG
CACCGCGGGCTGCGCCGCGGAGCCCAGCCCGCAATGA

protein sequence of jgi.p|Trimin1|347751

>Trimin1|347751|estExt_Genemark1.C_Ctg_150136 ID=Trimin1|347751|estExt_Genemark1.C_Ctg_150136|Name=jgi.p|Trimin1|347751|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=327bp
MGKDGYSVGEMVWCQWGLKYSWWPGKVLGYDTDADEYVVLGYDADADEYE
VECEEDARIEPWQGPAAQMMAFVDGWAEATRVIRDIQTRIGRDFYGDLVR
AVAAYRRCAPAALPQMAPRERWNTYINALHSFVLAGPAPELPPPPPEAAA
AAAAAKAAAGTKGQHAGPPAKPTPAAATAAHARSSSGGDGDGSGGKRQKV
AQNGSDSAAAFVVNKIPDDSDDNEEGKGKWDLSGAPRRRPSSGKPAGAAA
VKAENGGSDLGEGSGGEEEGGEGGIWGKPGGVLSDLGPGWEEQAALMAAV
IFSSAAASADAELLRTAGCAAEPSPQ*

mRNA from alignment at Contig_15:1155011..1158850+

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3987 ID=mRNA_3987|Name=jgi.p|Trimin1|347751|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3840bp|location=Sequence derived from alignment at Contig_15:1155011..1158850+ (Tribonema minus UTEX_B_3156 )
GGGGTGATGGGGAAGGACGGGTACAGCGTTGGCGAGATGGTGTGGTGCCA
GTGGGGCTTGAAATACAGCTGGTGGCCGGGGAAGGTGAGCATGACCGATA
TGTTGCCAAAAACGCGCGGCACATCTCCTGCGTAGCGGAAGCCGCCTTGA
GGCCTGCTGGCGGTGATCAGAGGCATCCGACGTCAGCGTTGCTTCTCGCT
GTGTCCTCTGACGTCCCTGACGCTGGTACACCGACTGGAAGATACGCAAT
GGCAGCGCTCCTGCCAAGGTGGTCAGCAAATTGTAGAGCATACTTTCAGC
TGAAGCAAGGTTTATCTTGACTGTTGCCATATCATGAATGCATCAAATAA
GATCCTTCAGATGCACATCACCGCACAGTCGATTGAGCTAGAAACTTCGC
TGCTGGCGCTTCTGCCCCCCGCACAGCTGATGCTTGTGCATGGAGCCCCT
GGCTCCAGTAAGATTGCTGAGCGTACGTGAACAATATTGATGAGCCGTGC
AGCGGATACACGCGTGTGCCGCATGATTTCGGCACACGCTTTGCAGCAGA
GCGCTGAACACGCTTCAGGCCAGCAGCCCTCCTAGCGTGAAGCGAAGTTC
ACTGAGAGCGTGTTCACTTAACAGATGCAGCTCCTTCTACCTGTGCTAGG
CCAGCAAGCCACTGCCTACTACTTGTGCTGACTCTTTCTACGAGCAAGCT
CGGGAGTCGCATCATCCGCTTGCACCATTTCAGGCCAGCGAACATGCTGC
TGCACTTTGCAGACTCAGCTTGCTGTTACCTTTAACGAGTGCTCACTTCG
AACCGGTCACTAGGTAACACTCAAACACGTAGTCACCCGCTGCTGTGAAG
CGATCGCCGACTGCTGCGCCGAATGCGAGGAGCGCTCGCGTAGTTCGCCT
GATGCTGCTGTGTTTATGTGTGTCACTTGGCAGTGCACCAGTCACGGCCA
TGAACAGCATCAGCGCTGTTGTGCAGTTTTTTAAGGGTTAGGGTTAGGGT
TAGCCTAACCCTAACCCTGACCCTAACCCTCACGGCATACAAAAAGGTGA
TGTAACAACACGTCTACAAGGCACAAGCCAATTGCAGGTGGCTTCTTGTC
TTAGACAGCAGGGGATGGGCGCAGTGCGCGGACCTGCTGCCTGTCGTAAC
AGAAGCCACCACGCCGATGCTGCCAAGTAATAACCAAACGCGGCGAATGC
GTCAGTGCTCATGTAGCCTGTGTGTCTCACGTAGTCAACCTGAAATCCGC
ACTTTACATATCATCAGTGTTTCAGTCAAACGTCATGTACATTTTGAATT
ACGTGACCCTGCTGTTTTAGTGATGCAATTTGCCATTGCACCGATCATGG
CCGCGCACGTCGCCGGTCACCCGGCGTTCAGGTGACCTCACGGGAGAAGA
ACAGTCCGCTTTCGCGGCGAAGCGGCGTGTGACGCACGCCTCCCAGTGGC
GCGGACGCTGTGCTGATGCTACCTGATATGCGAGCGCCTTTCCCACACCA
TGTTGCCTAGCAGGGACCCCCCCCCCCCCCCCCCCCCCGCCGCGTGCACC
CCGCAGTCACCATGACATACGATCACCAATTTCCTGAGCACCCCGATCAC
CGCCGTCGCATTCGGCGCCGCGACACGCACGCACTTAACCTTGCCGCACA
GGTGTCAGTCCCTCTACACAGGTCATCTGTCAATTTTGCAGAGACCCGTG
TTTTCATTAAACCGTCGCCACCCCGCGCTGCGCGCGCAGGTCCTCGGCTA
CGACACCGACGCCGACGAGTACGTTGTGACATGCGCATCATTCTTCATTC
ATTCACATAGTATAGCTGGATCGTGCTTTCGCTCATTGTCCAATATTCCT
CACTGCTGGCCTCAAAAAGAAGCCTGGGCCTTGTCTCAGTCCCAGTGTGG
TTGACCGTTCTCTGCGCACGCGCGACGCAGGTCCTCGGCTACGACGCCGA
CGCAGACGAGTACGAAGTGGAGTGCGAGGAGGACGCGCGCATCGAGCCGT
GGCAGGGCCCCGCGGCGCAGATGATGGCGTTCGTCGACGGCTGGGCGGAG
GCGACGCGCGTCATCCGCGACATACAGACGCGCATCGGCCGCGACTTCTA
CGGCGACCTCGTGCGCGCCGTCGCCGCGTACCGGCGCTGCGCGCCCGCGG
CGCTGCCGCAGATGGCGCCGAGGTGAGCGCTGCCGCCGCCGCCACTTTCG
CTGTTGCTGCCGCCGCCGCTGCTGCTGCTGTCGCCGCCGCTGCTCCTGCC
GCTGCCGCTGCGCGCCGCTGTCCGAGTTCTGCGGCGCGATGCGTCAGCCC
CTGTGTCACGAAACGCGCTGCGTAACGCGTTTACGTAGCTGGCCTTGCAT
ATCAGATGTGCATAAGCGTGGGATTGGCGCAGCAGCAGTGCTCAACTATG
GGCGCTGCGGGGCCGCCGCGCTGGCGCCGGCGATGTCGGAGACGATATGA
CGGCGGCTGCTGCTGCTGCTGCTACGTGCTTGCGGTGATGCGCTGAAGTG
CACTGCTGCTGACTCCGTTGGTGATGCACCGCTTGCCGCGCAAGCGTGTG
TGAGTGTGAGTGTCATAGTCCGTACAGCAAAGACGCGCTGCCGCGCGTGC
CGCTGTTTGACAGCGCTGCGCGGAAGTGCCGCCGCCGCCGCTGGCTGCGC
GCCGGACGCTTGCGAGGACCTGCTGCGCGCTTTGCACACGCCCTGAGCCG
CGCTGTGGCGCGTCGTCGCGTCGCCGCGACGGCGGTGCGTGCATCTCCCG
CGCTGAACGCGATGCGTTGCGCGTGCCGGCCTCCGCCCCTCGATGTTCGG
AGGGTGTCGCATACGAGCTCTGTCATTTGTTGCCAGGGACAGACGCACTG
CCGCAGCTGCTTGCATGGAGGTCGCCCCCGTCGCTGTGATGCTGTGAGAC
GCGGTCGCGTGCGACGCGCTCCCATCGCAGATGGCAGTTGAAGTTAAGTG
GTGGCGCTGGACCCGCGTGCAGGAGCTCTGCGACTGACGCGCCTCCCTCT
AGCTTCGGAATAGTCGCCTTGAGATGATATATACGATATACCATCTAGTC
TCTCAGATCATTATTGCGGCGCGGCGCTCTCTAAAACGTCCCCCTAGGTT
TCCCCTTCTCTGCTCCCTCCCCGCAATGCTTTCTGCGATGCGGGTTGTGC
TAGCGCATGTGGGCATCTCGCTCAAGCTGCTGCCGCTGCCTCTGCCCTCT
CTTCTCTGCAAACAGAGAGCGCTGGAACACGTACATCAACGCGCTGCACA
GCTTCGTCCTCGCAGGTCCGGCGCCGGAGCTGCCGCCGCCGCCGCCGGAA
GCCGCGGCAGCAGCGGCGGCAGCCAAGGCGGCGGCAGGGACCAAGGGGCA
GCACGCAGGGCCGCCGGCGAAACCGACACCGGCGGCAGCGACGGCAGCGC
ACGCGCGCAGCAGCAGCGGCGGCGACGGCGACGGCAGCGGCGGCAAGCGG
CAGAAGGTGGCGCAGAACGGCAGCGACTCCGCCGCCGCCTTCGTCGTCAA
CAAGATCCCCGACGACAGCGACGACAACGAGGAGGGCAAGGGCAAGTGGG
ACCTGTCCGGCGCACCGCGGCGCCGCCCGAGCAGCGGCAAGCCCGCCGGC
GCCGCCGCCGTGAAGGCGGAGAACGGCGGCAGCGACCTGGGGGAGGGGAG
CGGGGGCGAGGAGGAGGGGGGGGAGGGGGGCATCTGGGGGAAGCCCGGGG
GCGTGCTGAGCGACCTCGGGCCCGGCTGGGAGGAGCAGGCGGCGCTCATG
GCGGCGGTGATCTTCAGCAGCGCGGCGGCGAGCGCCGACGCGGAGCTGTT
GCGCACCGCGGGCTGCGCCGCGGAGCCCAGCCCGCAATGA

Coding sequence (CDS) from alignment at Contig_15:1155011..1158850+

>mRNA_3987 ID=mRNA_3987|Name=jgi.p|Trimin1|347751|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=981bp|location=Sequence derived from alignment at Contig_15:1155011..1158850+ (Tribonema minus UTEX_B_3156 )
ATGGGGAAGGACGGGTACAGCGTTGGCGAGATGGTGTGGTGCCAGTGGGG
CTTGAAATACAGCTGGTGGCCGGGGAAGGTCCTCGGCTACGACACCGACG
CCGACGAGTACGTTGTCCTCGGCTACGACGCCGACGCAGACGAGTACGAA
GTGGAGTGCGAGGAGGACGCGCGCATCGAGCCGTGGCAGGGCCCCGCGGC
GCAGATGATGGCGTTCGTCGACGGCTGGGCGGAGGCGACGCGCGTCATCC
GCGACATACAGACGCGCATCGGCCGCGACTTCTACGGCGACCTCGTGCGC
GCCGTCGCCGCGTACCGGCGCTGCGCGCCCGCGGCGCTGCCGCAGATGGC
GCCGAGAGAGCGCTGGAACACGTACATCAACGCGCTGCACAGCTTCGTCC
TCGCAGGTCCGGCGCCGGAGCTGCCGCCGCCGCCGCCGGAAGCCGCGGCA
GCAGCGGCGGCAGCCAAGGCGGCGGCAGGGACCAAGGGGCAGCACGCAGG
GCCGCCGGCGAAACCGACACCGGCGGCAGCGACGGCAGCGCACGCGCGCA
GCAGCAGCGGCGGCGACGGCGACGGCAGCGGCGGCAAGCGGCAGAAGGTG
GCGCAGAACGGCAGCGACTCCGCCGCCGCCTTCGTCGTCAACAAGATCCC
CGACGACAGCGACGACAACGAGGAGGGCAAGGGCAAGTGGGACCTGTCCG
GCGCACCGCGGCGCCGCCCGAGCAGCGGCAAGCCCGCCGGCGCCGCCGCC
GTGAAGGCGGAGAACGGCGGCAGCGACCTGGGGGAGGGGAGCGGGGGCGA
GGAGGAGGGGGGGGAGGGGGGCATCTGGGGGAAGCCCGGGGGCGTGCTGA
GCGACCTCGGGCCCGGCTGGGAGGAGCAGGCGGCGCTCATGGCGGCGGTG
ATCTTCAGCAGCGCGGCGGCGAGCGCCGACGCGGAGCTGTTGCGCACCGC
GGGCTGCGCCGCGGAGCCCAGCCCGCAATGA