mRNA_389 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|157480
Unique NamemRNA_389
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|157480 vs. uniprot
Match: A0A836CFD9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFD9_9STRA)

HSP 1 Score: 238 bits (606), Expect = 5.050e-77
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1 
Query:    1 KALELLFQMQAEGIAWTPRACSAALRACGEAGLMDRAVQLTGKMRQSGVNPSDDDYVVLIRMCVPRRGRAYNRSNRGGSSRVLELLQHMEDTDHAPKLPHFNEAIMACGRAGDTAIV 351
            KALELLFQMQAEGIAWTPRACSAALRACGEAGLMDRAVQLTGKMRQSGVNPSDDDYVVLIRMCVPRRGRAYNRSNRGGSSRVLELLQHMEDTDHAPKLPHFNEAIMACGRAGDTAIV
Sbjct:    1 KALELLFQMQAEGIAWTPRACSAALRACGEAGLMDRAVQLTGKMRQSGVNPSDDDYVVLIRMCVPRRGRAYNRSNRGGSSRVLELLQHMEDTDHAPKLPHFNEAIMACGRAGDTAIV 117
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|157480 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CFD9_9STRA5.050e-77100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_3contigContig_3:1133007..1134238 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|157480|e_gw1.3.430.1
Descriptionendonuclease activity
COG categoryS
Max annot lvl2880.D7FK60|-
EggNOG OGsKOG4197@1|root,KOG4197@2759|Eukaryota
Evalue1.28e-05
Seed ortholog2880.D7FK60
Hectar predicted targeting categoryother localisation
TranscriptId157802
TrackFilteredModels1
ProteinId157480
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157480gene_389Tribonema minus UTEX_B_3156 geneContig_3 1133007..1134238 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_389_1exon_389_1Tribonema minus UTEX_B_3156 exonContig_3 1133007..1133387 +
exon_389_2exon_389_2Tribonema minus UTEX_B_3156 exonContig_3 1134038..1134238 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_389CDS_389Tribonema minus UTEX_B_3156 CDSContig_3 1133007..1133387 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157480Trimin1|157480|e_gw1.3.430.1Tribonema minus UTEX_B_3156 polypeptideContig_3 1133007..1134238 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_389 ID=mRNA_389|Name=jgi.p|Trimin1|157480|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=582bp|location=Sequence derived from alignment at Contig_3:1133007..1134238+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AAAGCCCTGGAGCTGCTGTTTCAGATGCAAGCGGAAGGAATTGCCTGGAC
CCCGCGTGCATGCAGTGCGGCGTTGCGAGCGTGCGGTGAAGCCGGGCTCA
TGGACCGCGCAGTGCAACTGACTGGCAAGATGCGCCAAAGCGGTGTCAAC
CCCAGTGATGACGATTACGTCGTGCTGATCCGCATGTGTGTACCGCGGCG
GGGTCGAGCATATAATCGCAGCAACAGAGGTGGCAGCAGCCGGGTACTGG
AGTTGCTGCAGCACATGGAAGACACAGATCACGCGCCCAAGCTTCCACAC
TTCAACGAAGCCATCATGGCATGTGGCCGGGCGGGCGACACCGCTATTGT
CTCCCAAATACTTCAGGAGATGCACCGCAAGGGAGTGCGTCCGAACATAA
TTACCTGGAATGCACGACTGGACGCCCTTGGTGGTGCGGGGCTGATTGAC
CAAATGTTGGCAACCTACAAGAAGATGCAGGCAGCCCGCCAGCGTCCCAA
CATATACACCATCACCTGCATGCTATCGCGTGTTGGCTCTGCTGGGGAGC
GCCAGATCGCGGAGGACCTTGGGAGGATATGA
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protein sequence of jgi.p|Trimin1|157480

>Trimin1|157480|e_gw1.3.430.1 ID=Trimin1|157480|e_gw1.3.430.1|Name=jgi.p|Trimin1|157480|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=194bp
KALELLFQMQAEGIAWTPRACSAALRACGEAGLMDRAVQLTGKMRQSGVN
PSDDDYVVLIRMCVPRRGRAYNRSNRGGSSRVLELLQHMEDTDHAPKLPH
FNEAIMACGRAGDTAIVSQILQEMHRKGVRPNIITWNARLDALGGAGLID
QMLATYKKMQAARQRPNIYTITCMLSRVGSAGERQIAEDLGRI*
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mRNA from alignment at Contig_3:1133007..1134238+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_389 ID=mRNA_389|Name=jgi.p|Trimin1|157480|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1232bp|location=Sequence derived from alignment at Contig_3:1133007..1134238+ (Tribonema minus UTEX_B_3156 )
AAAGCCCTGGAGCTGCTGTTTCAGATGCAAGCGGAAGGAATTGCCTGGAC
CCCGCGTGCATGCAGTGCGGCGTTGCGAGCGTGCGGTGAAGCCGGGCTCA
TGGACCGCGCAGTGCAACTGACTGGCAAGATGCGCCAAAGCGGTGTCAAC
CCCAGTGATGACGATTACGTCGTGCTGATCCGCATGTGTGTACCGCGGCG
GGGTCGAGCATATAATCGCAGCAACAGAGGTGGCAGCAGCCGGGTACTGG
AGTTGCTGCAGCACATGGAAGACACAGATCACGCGCCCAAGCTTCCACAC
TTCAACGAAGCCATCATGGCATGTGGCCGGGCGGGCGACACCGCTATTGT
CTCCCAAATACTTCAGGAGATGCACCGCAAGGTATGTGAACCACAGATCA
TGATGTGTCTGATCGCAGGTCCACTGTTACAGCATCATCATGATACCATG
ATAGTGAGTGCATTAGTGCTGTTTTTTTCTACTTCCCCTAAGTGCCTAAG
AGTGCTACGCGAGTGCTGGAGAGTGTTTTGTCGCAACCAGGTTAGACTGG
CTGCTACACGTAGGGGTCATCACGTGATACTGACTTGCTCTAGCGTTTGT
ACATGGTGACTTTCGCACCGTGAAATTGTCAATTTCGCAGTGTCACAAAC
CATTGGAGGCAGTCACTGTGCGCCATTGCAGCGTCCTTGTGGGACTTGAA
CAGTGCATTGCTGTTTTAGAGGTGGGTGGCAATGCAGCTCGACATCAACA
TATCACCTTGCAGCAAGCTGTAAAAATGTGTGCACTGCATGAAGAGGGAT
CATCCCTTGAGTACAGCATTGAGTACAGCAGTAATAACAATGTCATATCA
CGTCTGGCACCCTACAGTGGCGACTGACAGTGCACGCTCTTGCTTGTGGC
TGATTGCTTTGCAATCAAGCTGGCTAAACACCACATGGGCCATGCAAGCC
ACATAGAAGTATGTATTAATTGACCGTGCACCTAAATAAATCGTAAAGTG
AGCGTTGCTGCTGGCTCACCAATTTCTGCAGGGAGTGCGTCCGAACATAA
TTACCTGGAATGCACGACTGGACGCCCTTGGTGGTGCGGGGCTGATTGAC
CAAATGTTGGCAACCTACAAGAAGATGCAGGCAGCCCGCCAGCGTCCCAA
CATATACACCATCACCTGCATGCTATCGCGTGTTGGCTCTGCTGGGGAGC
GCCAGATCGCGGAGGACCTTGGGAGGATATGA
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Coding sequence (CDS) from alignment at Contig_3:1133007..1134238+

>mRNA_389 ID=mRNA_389|Name=jgi.p|Trimin1|157480|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=582bp|location=Sequence derived from alignment at Contig_3:1133007..1134238+ (Tribonema minus UTEX_B_3156 )
AAAGCCCTGGAGCTGCTGTTTCAGATGCAAGCGGAAGGAATTGCCTGGAC
CCCGCGTGCATGCAGTGCGGCGTTGCGAGCGTGCGGTGAAGCCGGGCTCA
TGGACCGCGCAGTGCAACTGACTGGCAAGATGCGCCAAAGCGGTGTCAAC
CCCAGTGATGACGATTACGTCGTGCTGATCCGCATGTGTGTACCGCGGCG
GGGTCGAGCATATAATCGCAGCAACAGAGGTGGCAGCAGCCGGGTACTGG
AGTTGCTGCAGCACATGGAAGACACAGATCACGCGCCCAAGCTTCCACAC
TTCAACGAAGCCATCATGGCATGTGGCCGGGCGGGCGACACCGCTATTGT
CTCCCAAATACTTCAGGAGATGCACCGCAAGGGAGTGCGTCCGAACATAA
TTACCTGGAATGCACGACTGGACGCCCTTGGTGGTGCGGGGCTGATTGAC
CAAATGTTGGCAACCTACAAGAAGATGCAGGCAGCCCGCCAGCGTCCCAA
CATATACACCATCACCTGCATGCTATCGCGTGTTGGCTCTGCTGGGGAGC
GCCAGATCGCGGAGGACCTTGGGAGGATATGA
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